BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146817.2 + phase: 0
(145 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RPOC_RICPR (Q9ZE20) DNA-directed RNA polymerase beta' chain (EC ... 34 0.12
RPOC_RICCN (Q9RH40) DNA-directed RNA polymerase beta' chain (EC ... 33 0.16
AF4_MOUSE (O88573) AF-4 protein (Proto-oncogene AF4) 30 1.4
SYR_METMA (Q8PX74) Arginyl-tRNA synthetase (EC 6.1.1.19) (Argini... 30 1.8
NCR1_MOUSE (Q60974) Nuclear receptor corepressor 1 (N-CoR1) (N-C... 29 3.0
ISCA_YEAST (P32645) Meiosis specific protein ISC10 29 3.0
IKI1_YEAST (P38874) IKI1 protein 29 3.0
YJ9H_YEAST (P47171) Hypothetical 191.7 kDa protein in HOM6-PMT4 ... 29 4.0
NCR1_HUMAN (O75376) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) 29 4.0
IFP1_CAEEL (Q09501) Intermediate filament protein ifp-1 (Interme... 29 4.0
HMG4_MOUSE (O54879) High mobility group protein 4 (HMG-4) (High ... 29 4.0
HMG4_HUMAN (O15347) High mobility group protein 4 (HMG-4) (High ... 29 4.0
YB37_METTH (O27209) Hypothetical protein MTH1137 28 5.2
RMUC_ZYMMO (Q9REQ3) DNA recombination protein rmuC homolog 28 5.2
HMW2_MYCPN (P75471) Cytadherence high molecular weight protein 2... 28 5.2
HMG2_MOUSE (P30681) High mobility group protein 2 (HMG-2) 28 5.2
HMG2_HUMAN (P26583) High mobility group protein 2 (HMG-2) 28 5.2
YL17_CAEEL (Q11102) Hypothetical protein C02F12.7 in chromosome X 28 6.8
YDO7_SCHPO (O13727) Hypothetical protein C15A10.07 in chromosome I 28 6.8
RRPO_GGNNV (Q993M1) RNA-directed RNA polymerase (EC 2.7.7.48) (R... 28 6.8
>RPOC_RICPR (Q9ZE20) DNA-directed RNA polymerase beta' chain (EC
2.7.7.6) (RNAP beta' subunit) (Transcriptase beta'
chain) (RNA polymerase beta' subunit)
Length = 1372
Score = 33.9 bits (76), Expect = 0.12
Identities = 22/65 (33%), Positives = 32/65 (48%), Gaps = 3/65 (4%)
Query: 67 YMIIQPKEKGKSNSGKGEHITSRPLQAAHDEYEEEATLAKQGCPHIAKLGKGRRIKPLKH 126
Y+++ P G S KGE +T LQ A D+Y E+A A G I ++ K LK
Sbjct: 143 YVVVDP---GLSILQKGELLTEEELQKAKDKYGEDAFTASIGAEVIQQMLKELDFSKLKQ 199
Query: 127 SNFNE 131
++E
Sbjct: 200 ELYDE 204
>RPOC_RICCN (Q9RH40) DNA-directed RNA polymerase beta' chain (EC
2.7.7.6) (RNAP beta' subunit) (Transcriptase beta'
chain) (RNA polymerase beta' subunit)
Length = 1372
Score = 33.5 bits (75), Expect = 0.16
Identities = 22/65 (33%), Positives = 31/65 (46%), Gaps = 3/65 (4%)
Query: 67 YMIIQPKEKGKSNSGKGEHITSRPLQAAHDEYEEEATLAKQGCPHIAKLGKGRRIKPLKH 126
Y+++ P G S KGE +T LQ A D+Y E+A A G I ++ K LK
Sbjct: 143 YVVVDP---GLSILQKGELLTEEELQKAKDKYGEDAFTASIGAEVIQQMLKELDFSKLKQ 199
Query: 127 SNFNE 131
+ E
Sbjct: 200 ELYEE 204
>AF4_MOUSE (O88573) AF-4 protein (Proto-oncogene AF4)
Length = 1217
Score = 30.4 bits (67), Expect = 1.4
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 41 EDSNSLKVKEKDNMKHHCDEKREVYEYMIIQPKEKGKSNSGKGEHITSRPLQAAHDEYEE 100
ED N L+++EK+ +++E + P + KG+ ++SR +Q +YEE
Sbjct: 10 EDRNLLRIREKERRNQEAHQEKEAFPEK--APLFPEPYKTAKGDELSSR-IQTMLGDYEE 66
Query: 101 -EATLAKQGCPHIAKLGKGRRIKP 123
+ L+ + PH + R KP
Sbjct: 67 MKEFLSSKSHPHRLDGSEDRPGKP 90
>SYR_METMA (Q8PX74) Arginyl-tRNA synthetase (EC 6.1.1.19)
(Arginine--tRNA ligase) (ArgRS)
Length = 569
Score = 30.0 bits (66), Expect = 1.8
Identities = 22/70 (31%), Positives = 31/70 (43%), Gaps = 4/70 (5%)
Query: 42 DSNSLKVKEKDNMKHHCDEKREVYEYMIIQPKEKGKSNSGKGEHITSRPLQAAHDEYEEE 101
D N +KE D + EK E + I+ +K S + G T L AHD++ E
Sbjct: 201 DKNPGYIKEIDALM----EKVEAGDVRTIEHFDKAVSLAVAGIKETLLRLNVAHDKFVSE 256
Query: 102 ATLAKQGCPH 111
+T K G H
Sbjct: 257 STFLKSGAVH 266
>NCR1_MOUSE (Q60974) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR)
(Retinoid X receptor interacting protein 13) (RIP13)
Length = 2453
Score = 29.3 bits (64), Expect = 3.0
Identities = 24/87 (27%), Positives = 35/87 (39%), Gaps = 3/87 (3%)
Query: 33 RGVNNQIFEDSNSLKVKEKDNMKHHCDEKREVYEYMIIQPKEKGKSNSGKGEHITSRPLQ 92
RG N QI S KV+EK+ K EK+E + +EK K +
Sbjct: 499 RGRNQQIARPSQEEKVEEKEEDKAEKTEKKEEEKK---DDEEKDDKEDSKETTKEKDRTE 555
Query: 93 AAHDEYEEEATLAKQGCPHIAKLGKGR 119
A +E EE + +G G+G+
Sbjct: 556 ATAEEPEEREQVTPRGRKTANSQGRGK 582
>ISCA_YEAST (P32645) Meiosis specific protein ISC10
Length = 267
Score = 29.3 bits (64), Expect = 3.0
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 47 KVKEKDNMKHHCDEKREVYEYMIIQPKEKGKSNSGKGEHITSRPLQAAHDEYEEEATLAK 106
++ + +N H +K+ ++I KEK + S EHI R L H + ++ LAK
Sbjct: 6 RLHQDENQTHPFSQKKSS-SFLI---KEKAATKSKDLEHIRLRDLNFNHRKKLDDKKLAK 61
Query: 107 QGCPHIAKLGKGRRIKPLKHSNFNE 131
Q P A K I+ + N NE
Sbjct: 62 Q-IPVKANFKKPNEIEARANLNSNE 85
>IKI1_YEAST (P38874) IKI1 protein
Length = 309
Score = 29.3 bits (64), Expect = 3.0
Identities = 14/54 (25%), Positives = 28/54 (50%)
Query: 30 RVPRGVNNQIFEDSNSLKVKEKDNMKHHCDEKREVYEYMIIQPKEKGKSNSGKG 83
R+PRG+NN IF+ K K ++++ +EY ++ ++ + +S G
Sbjct: 192 RIPRGLNNDIFQLRLVNKRKSGRSLEYDFIVNSNTHEYELLSTTKQEEESSSNG 245
>YJ9H_YEAST (P47171) Hypothetical 191.7 kDa protein in HOM6-PMT4
intergenic region
Length = 1648
Score = 28.9 bits (63), Expect = 4.0
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 36 NNQIFEDSNSLKVKEKDNMKHHCDEKREVYEYMIIQPKEKGKSNSGKGEHITS-RPLQAA 94
N + + + +E+DN D+K IQ E+ + N EHI S +PLQ +
Sbjct: 301 NTPSLDRESERQEEEQDNESVRADDKSGNLAPSDIQTNEEARPNKRTDEHIDSTKPLQRS 360
Query: 95 HDEYEE 100
++E
Sbjct: 361 SKRFKE 366
>NCR1_HUMAN (O75376) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR)
Length = 2440
Score = 28.9 bits (63), Expect = 4.0
Identities = 31/104 (29%), Positives = 41/104 (38%), Gaps = 15/104 (14%)
Query: 33 RGVNNQIFEDSNSLKVKEKDNMKHHCDEKREVYEYMIIQPKEKGKSNSGKGEHITSRPLQ 92
RG N QI S KV+EK+ K EK+E E+ K K E S+
Sbjct: 499 RGRNQQIARPSQEEKVEEKEEDKAEKTEKKE----------EEKKDEEEKDEKEDSKENT 548
Query: 93 AAHDEYE---EEATLAKQGCPHIAKL--GKGRRIKPLKHSNFNE 131
D+ + EE +Q P K +GRR + S NE
Sbjct: 549 KEKDKIDGTAEETEEREQATPRGRKTANSQGRRKGRITRSMTNE 592
>IFP1_CAEEL (Q09501) Intermediate filament protein ifp-1
(Intermediate filament protein E1) (IF-E1) (Cel IF E1)
Length = 776
Score = 28.9 bits (63), Expect = 4.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 36 NNQIFEDSNSLKVKEKDNMKHHC 58
NN++FED+ K+KE + M+ C
Sbjct: 314 NNKLFEDTLEFKIKEIEKMREQC 336
>HMG4_MOUSE (O54879) High mobility group protein 4 (HMG-4) (High
mobility group protein 2a) (HMG-2a)
Length = 199
Score = 28.9 bits (63), Expect = 4.0
Identities = 20/67 (29%), Positives = 29/67 (42%)
Query: 35 VNNQIFEDSNSLKVKEKDNMKHHCDEKREVYEYMIIQPKEKGKSNSGKGEHITSRPLQAA 94
V ++ E N+L EK + +E YE + K KGK + KG +R
Sbjct: 122 VAKKLGEMWNNLSDNEKQPYVTKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEE 181
Query: 95 HDEYEEE 101
+E EEE
Sbjct: 182 EEEEEEE 188
>HMG4_HUMAN (O15347) High mobility group protein 4 (HMG-4) (High
mobility group protein 2a) (HMG-2a)
Length = 199
Score = 28.9 bits (63), Expect = 4.0
Identities = 20/67 (29%), Positives = 29/67 (42%)
Query: 35 VNNQIFEDSNSLKVKEKDNMKHHCDEKREVYEYMIIQPKEKGKSNSGKGEHITSRPLQAA 94
V ++ E N+L EK + +E YE + K KGK + KG +R
Sbjct: 122 VAKKLGEMWNNLNDSEKQPYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKVEE 181
Query: 95 HDEYEEE 101
DE +EE
Sbjct: 182 EDEEQEE 188
>YB37_METTH (O27209) Hypothetical protein MTH1137
Length = 505
Score = 28.5 bits (62), Expect = 5.2
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 1 MRPSKLHQIAALTSKVDKNIKKNGKFGPIRVPRGV 35
MRP +L + T++V ++ G++GP+R PR +
Sbjct: 103 MRPVELMREVRETTEVPLDLDHFGRYGPMRFPRSI 137
>RMUC_ZYMMO (Q9REQ3) DNA recombination protein rmuC homolog
Length = 448
Score = 28.5 bits (62), Expect = 5.2
Identities = 16/65 (24%), Positives = 33/65 (50%)
Query: 40 FEDSNSLKVKEKDNMKHHCDEKREVYEYMIIQPKEKGKSNSGKGEHITSRPLQAAHDEYE 99
+ + SL + E+ K +E+ + Y I Q K + S K + + ++ L+ AH ++
Sbjct: 62 WREKASLLMAEQAANKRGEEEREKAYRQQIEQLKATEDALSQKFDSLAAKTLEKAHGQFL 121
Query: 100 EEATL 104
E+A +
Sbjct: 122 EQAQM 126
>HMW2_MYCPN (P75471) Cytadherence high molecular weight protein 2
(Cytadherence accessory protein 2)
Length = 1818
Score = 28.5 bits (62), Expect = 5.2
Identities = 21/83 (25%), Positives = 35/83 (41%), Gaps = 12/83 (14%)
Query: 33 RGVNNQIFEDSNSLKVK----EKDNMKH--------HCDEKREVYEYMIIQPKEKGKSNS 80
R V Q + LK + EK++ KH + ++ Y Y P++K + +S
Sbjct: 1580 RAVEQQYQAEITRLKTRNADLEKNDNKHLFPPLFKINGNDMNYPYPYPWFYPQQKQEDSS 1639
Query: 81 GKGEHITSRPLQAAHDEYEEEAT 103
+ H+ + LQ YE E T
Sbjct: 1640 NQIRHLFEQQLQFMQQRYENELT 1662
>HMG2_MOUSE (P30681) High mobility group protein 2 (HMG-2)
Length = 209
Score = 28.5 bits (62), Expect = 5.2
Identities = 19/56 (33%), Positives = 26/56 (45%), Gaps = 3/56 (5%)
Query: 49 KEKDNMKHHCDEKREVYEYMIIQPKEKGKSNSGK---GEHITSRPLQAAHDEYEEE 101
K+K + + +E YE I + KGKS +GK G S+ DE EEE
Sbjct: 138 KDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEE 193
>HMG2_HUMAN (P26583) High mobility group protein 2 (HMG-2)
Length = 208
Score = 28.5 bits (62), Expect = 5.2
Identities = 19/56 (33%), Positives = 26/56 (45%), Gaps = 3/56 (5%)
Query: 49 KEKDNMKHHCDEKREVYEYMIIQPKEKGKSNSGK---GEHITSRPLQAAHDEYEEE 101
K+K + + +E YE I + KGKS +GK G S+ DE EEE
Sbjct: 138 KDKQPYEQKAAKLKEKYEKDIAAYRAKGKSEAGKKGPGRPTGSKKKNEPEDEEEEE 193
>YL17_CAEEL (Q11102) Hypothetical protein C02F12.7 in chromosome X
Length = 1130
Score = 28.1 bits (61), Expect = 6.8
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 11/69 (15%)
Query: 49 KEKDNMKHHCDEKREVYEYMIIQPKEKGKSNSGKGEHITSRPLQAAHDEYEEEATLAKQG 108
KEK+ K H YE ++++ +++ +S EH + +E EE+ T K+
Sbjct: 465 KEKETTKEH-------YEGLLLKERQQAESR----EHAMKKEFSCKLNELEEQYTSLKEE 513
Query: 109 CPHIAKLGK 117
A+L K
Sbjct: 514 LEESARLDK 522
>YDO7_SCHPO (O13727) Hypothetical protein C15A10.07 in chromosome I
Length = 190
Score = 28.1 bits (61), Expect = 6.8
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 21 KKNGKFGPIRVPRGVNNQIFEDSNSLKVKEKDNMK 55
KKN P VP G+ +I E++ SL +KE + +K
Sbjct: 83 KKNVLILPANVPEGIELRILEENVSLPLKEFEPIK 117
>RRPO_GGNNV (Q993M1) RNA-directed RNA polymerase (EC 2.7.7.48)
(RdRp) (RNA replicase) (Protein A)
Length = 982
Score = 28.1 bits (61), Expect = 6.8
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 69 IIQPKEKGKSNSGKGEHITSRPLQAAHDEYEEEATLAKQGCPHIAKLGKGRRIKPLKHSN 128
I P+ K KS EHIT + + A D +A G P+ + ++ KPL+ +
Sbjct: 442 IAGPQAKAKSR----EHITPKMRKVARDFVHHLVPIAGTGRPYPLTYVEEQQTKPLQRAR 497
Query: 129 FNERNCRDKF 138
+ D+F
Sbjct: 498 NDANRYHDEF 507
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.315 0.133 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,105,141
Number of Sequences: 164201
Number of extensions: 762462
Number of successful extensions: 1366
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1349
Number of HSP's gapped (non-prelim): 39
length of query: 145
length of database: 59,974,054
effective HSP length: 100
effective length of query: 45
effective length of database: 43,553,954
effective search space: 1959927930
effective search space used: 1959927930
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Medicago: description of AC146817.2