BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146807.4 + phase: 0
(919 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POL3_DROME (P04323) Retrovirus-related Pol polyprotein from tran... 178 7e-44
POL2_DROME (P20825) Retrovirus-related Pol polyprotein from tran... 162 3e-39
POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from tran... 144 1e-33
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 143 2e-33
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 137 1e-31
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 135 7e-31
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 135 7e-31
POL_MLVRD (P11227) Pol polyprotein [Contains: Protease (EC 3.4.2... 134 8e-31
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 130 2e-29
POLY_DROME (P10401) Retrovirus-related Pol polyprotein from tran... 130 2e-29
POL_MLVFF (P26809) Pol polyprotein [Contains: Protease (EC 3.4.2... 101 1e-20
POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC 3.4.2... 100 2e-20
POL3_MOUSE (P11367) Retrovirus-related Pol polyprotein (Endonucl... 100 2e-20
POL_MLVRK (P31795) Pol polyprotein [Contains: Protease (EC 3.4.2... 100 3e-20
POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.2... 99 4e-20
POL_MLVF5 (P26810) Pol polyprotein [Contains: Protease (EC 3.4.2... 99 7e-20
POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.2... 99 7e-20
POL_MLVAK (P03357) Pol polyprotein [Contains: Reverse transcript... 96 3e-19
POL_MLVCB (P08361) Pol polyprotein [Contains: Reverse transcript... 94 1e-18
POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC 3.4.23... 94 2e-18
>POL3_DROME (P04323) Retrovirus-related Pol polyprotein from
transposon 17.6 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1058
Score = 178 bits (451), Expect = 7e-44
Identities = 102/302 (33%), Positives = 161/302 (52%), Gaps = 8/302 (2%)
Query: 1 MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYK 60
MPFGL NA AT+QR M + +++K VY+DD+IV ST ++H++ L +FE+L K
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393
Query: 61 LRLNPDKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYIS 120
L+L DKC F + LG +++ GI+ +P+K+ AI++ P P K+++ FLG Y
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453
Query: 121 RFISHMTATCGPIFKLLRKNQPI-VWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYF 179
+FI + P+ K L+KN I N E AF +K + E PIL P + +
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTT 513
Query: 180 AVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLV 239
D ++G VL Q H + Y+S+ + E Y+ +EK A+ WA K RHYL+
Sbjct: 514 DASDVALGAVLSQDG------HPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLL 567
Query: 240 NHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPL 299
+ S P+ +++ K+ RW++ LSE+D K K K + +AD L+ L
Sbjct: 568 GRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKG-KENCVADALSRIKL 626
Query: 300 DD 301
++
Sbjct: 627 EE 628
>POL2_DROME (P20825) Retrovirus-related Pol polyprotein from
transposon 297 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1059
Score = 162 bits (411), Expect = 3e-39
Identities = 97/296 (32%), Positives = 151/296 (50%), Gaps = 8/296 (2%)
Query: 1 MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYK 60
MPFGL NA AT+QR M + +++K VY+DD+I+ ST +H+ + +F +L
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392
Query: 61 LRLNPDKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYIS 120
L+L DKC F + LG IV+ GI+ +P KV+AI P P +K++R FLG Y
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452
Query: 121 RFISHMTATCGPIFKLLRKNQPI-VWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYF 179
+FI + P+ L+K I E EAF+ +K ++ PIL P + ++
Sbjct: 453 KFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTT 512
Query: 180 AVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLV 239
+ ++G VL Q H I ++S+ D E Y+ +EK A+ WA K RHYL+
Sbjct: 513 DASNLALGAVLSQNG------HPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLL 566
Query: 240 NHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLA 295
+ S P++++ K+ RW++ LSEY K + S+ AD L+
Sbjct: 567 GRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSV-ADALS 621
>POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from
transposon opus [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1003
Score = 144 bits (362), Expect = 1e-33
Identities = 94/312 (30%), Positives = 154/312 (49%), Gaps = 19/312 (6%)
Query: 1 MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYK 60
+PFGL NA A +QR + + + I K VY+DD+IV S D + H + L + L K
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309
Query: 61 LRLNPDKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYIS 120
L++N +K F + LG+IV+ GI+ DP KVRAI EMP P + K+++ FLG +Y
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369
Query: 121 RFISHMTATCGPIFKLLR-----------KNQPIVWNDECQEAFDSIKNYLLEPPILVPP 169
+FI P+ L R PI ++ ++F+ +K+ L IL P
Sbjct: 370 KFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFP 429
Query: 170 VEGRPLIMYFAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAW 229
+P + + ++G VL Q D+ ++ I Y+S+ E Y +EK A+ W
Sbjct: 430 CFTKPFHLTTDASNWAIGAVLSQDDQ--GRDRPIAYISRSLNKTEENYATIEKEMLAIIW 487
Query: 230 AAKRLRHYLVN-HTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEY--DIVFKTQKAIK 286
+ LR YL T + + P+ + K+ RW+ + EY ++++K K+
Sbjct: 488 SLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGKS-- 545
Query: 287 GSILADHLAYQP 298
+++AD L+ P
Sbjct: 546 -NVVADALSRIP 556
Score = 35.4 bits (80), Expect = 0.70
Identities = 53/244 (21%), Positives = 96/244 (38%), Gaps = 20/244 (8%)
Query: 543 ILYKRNYDMVLLRCVDEHEAEQLMHDVHEGTFGTHATGHTMSRKLLRAGYYWMTMEHDCY 602
+LYK L+ D AE++ + + H G T R L YY+ M
Sbjct: 673 LLYKIRITQRLV--ADVSGAEEICEIIEKEHRRAHR-GPTEIRLQLLEKYYFPRMSSTIR 729
Query: 603 QHARKCHKCQIYADKIHVPPHALNVISSP---WPFSMWGIDMIGRIEPKASNGHRFILVA 659
C C++Y + H P+ N+ +P +P + ID+ + R L
Sbjct: 730 LQTSSCQCCKLYKYERH--PNKPNLQPTPIPNYPCEILHIDIFALEK-------RLYLSC 780
Query: 660 IDYFTKWVEAASYTNVTKQVVAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFK 719
ID F+K+ + + V + + + P +++DN L V
Sbjct: 781 IDKFSKFAK-LFHLQSKASVHLRETLVEALHYFTAPKVLVSDNERGLLCPTVLNYLRSLD 839
Query: 720 IEHHNSSPYRPQMNGVVEAANK---NIKRIVQKMVTTYRDWHEMLPYALHGYRTTVRSST 776
I+ + + + ++NG VE + I R ++ + T++ E++ A+ Y T+V S T
Sbjct: 840 IDLYYAPTQKSEVNGQVERFHSTFLEIYRCLKDELPTFKP-VELVHIAVDRYNTSVHSVT 898
Query: 777 GATP 780
P
Sbjct: 899 NRKP 902
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 143 bits (360), Expect = 2e-33
Identities = 89/295 (30%), Positives = 145/295 (48%), Gaps = 3/295 (1%)
Query: 1 MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYK 60
+PFGL A ++QR MT F + + +Y+DD+IV E+ ++ LT++F + R+Y
Sbjct: 442 LPFGLKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVFGKCREYN 501
Query: 61 LRLNPDKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYIS 120
L+L+P+KC+F + LG + KGI D K I+ P P R F+ NY
Sbjct: 502 LKLHPEKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYR 561
Query: 121 RFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYFA 180
RFI + I +L +KN P W DECQ+AF +K+ L+ P +L P + +
Sbjct: 562 RFIKNFADYSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTD 621
Query: 181 VFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVN 240
++ G VL Q + + Y S+ FT E+ + E+ A+ WA R Y+
Sbjct: 622 ASKQACGAVLTQNH--NGHQLPVAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYG 679
Query: 241 HTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLA 295
+ + P+ Y+F + K+ R ++ L EY+ + K K + +AD L+
Sbjct: 680 KHFTVKTDHRPLTYLFSMVNPSSKLTRIRLELEEYNFTVEYLKG-KDNHVADALS 733
Score = 116 bits (291), Expect = 2e-25
Identities = 97/381 (25%), Positives = 168/381 (43%), Gaps = 29/381 (7%)
Query: 547 RNYDMVLLRCV----DEHEAEQLMHDVHEGTFGTHATGHTMSRKLLRAGYYWMTMEHDCY 602
+N + LL V +E E E ++ +H+ TG T + ++ YYW M
Sbjct: 874 KNLKVALLNPVTQINNEKEKEAILSTLHDDPIQGGHTGITKTLAKVKRHYYWKNMSKYIK 933
Query: 603 QHARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDY 662
++ RKC KCQ H + F +D IG + PK+ NG+ + + I
Sbjct: 934 EYVRKCQKCQKAKTTKHTKTPMTITETPEHAFDRVVVDTIGPL-PKSENGNEYAVTLICD 992
Query: 663 FTKWVEAASYTNVTKQVVAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEH 722
TK++ A N + + VAK I + I +YG ITD GT N+++ LC+ KI++
Sbjct: 993 LTKYLVAIPIANKSAKTVAKAIFESFILKYGPMKTFITDMGTEYKNSIITDLCKYLKIKN 1052
Query: 723 HNSSPYRPQMNGVVEAANKNIKRIVQKMVTTYR-DWHEMLPYALHGYRTTVRSSTGATPF 781
S+ + Q GVVE +++ + ++ ++T + DW L Y ++ + TT P+
Sbjct: 1053 ITSTAHHHQTVGVVERSHRTLNEYIRSYISTDKTDWDVWLQYFVYCFNTTQSMVHNYCPY 1112
Query: 782 SHVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARG----QS 837
V+G + LP KL E + D + + A AR ++
Sbjct: 1113 ELVFGRTSNLPKHFN----------KLHSIEPIYNIDDYAKESKYRLEVAYARARKLLEA 1162
Query: 838 YQARMKTAFDKKVHPREFKTGELVLKRRISQQPDPRGKWTPNYEGPYVVKK-AFSGGALI 896
++ + K +D KV E + G+ VL R + K Y GPY ++ + +
Sbjct: 1163 HKEKNKENYDLKVKDIELEVGDKVLLRN-----EVGHKLDFKYTGPYKIESIGDNNNITL 1217
Query: 897 LTHMDGVELPNPVNADIVKKY 917
LT+ + ++ V+ D +KK+
Sbjct: 1218 LTNKNKKQI---VHKDRLKKF 1235
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 137 bits (345), Expect = 1e-31
Identities = 85/328 (25%), Positives = 163/328 (48%), Gaps = 21/328 (6%)
Query: 1 MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYK 60
MP+G+ A A +Q + T+ + V Y+DD+++ S E +HV+++ + ++L+
Sbjct: 534 MPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNAN 593
Query: 61 LRLNPDKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYIS 120
L +N KC F K +G+ +S+KG + + + + P+ K++R FLG +NY+
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653
Query: 121 RFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYFA 180
+FI + P+ LL+K+ W +A ++IK L+ PP+L + +++
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETD 713
Query: 181 VFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVN 240
D ++G VL Q+ + K + + Y S K + + Y++ +K A+ + K RHYL
Sbjct: 714 ASDVAVGAVLSQKHD-DDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLE- 771
Query: 241 HTTWLISRMDPIKYIFEKAAVTGKI-----------ARWQMLLSEYDIVFKTQKAIKGSI 289
S ++P K + + + G+I ARWQ+ L +++ + +
Sbjct: 772 ------STIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPG-SANH 824
Query: 290 LADHLAYQPLDDYQPIEFDFPDEEIMYV 317
+AD L+ + +D+ +PI D D I +V
Sbjct: 825 IADALS-RIVDETEPIPKDSEDNSINFV 851
Score = 97.1 bits (240), Expect = 2e-19
Identities = 115/505 (22%), Positives = 209/505 (40%), Gaps = 53/505 (10%)
Query: 392 IDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQ 451
++ I+ I D +I +I E E + +L ++ + + E+++ P N
Sbjct: 770 LESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDF-----NFEINYRPGSANH 824
Query: 452 MADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVDNKPWYHDIKQ 511
+ADAL+ + PI K + V I D + V + + +D K
Sbjct: 825 IADALSRIVD-------ETEPIPKDSEDNSINFVNQISITDDFKNQVVTE---YTNDTKL 874
Query: 512 FLLSREYPPGASNKDKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHE 571
L +N+DK+ + L DG ++ + D +LL D ++ HE
Sbjct: 875 LNL-------LNNEDKRVEENIQ---LKDGLLINSK--DQILLPN-DTQLTRTIIKKYHE 921
Query: 572 GTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVPPHALNVIS-S 630
H ++ +LR + W + ++ + CH CQI + H P L I S
Sbjct: 922 EGKLIHPGIELLTNIILRR-FTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPS 980
Query: 631 PWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYT-NVTKQVVAKFIRNNII 689
P+ +D I + S+G+ + V +D F+K T ++T + A+ +I
Sbjct: 981 ERPWESLSMDFITALPE--SSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVI 1038
Query: 690 CRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGVVEAANKNIKRIVQK 749
+G P +II DN + + ++ S PYRPQ +G E N+ ++++++
Sbjct: 1039 AYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRC 1098
Query: 750 MVTTY-RDWHEMLPYALHGYRTTVRSSTGATPFSHVYGMEAVLPLEVEIPSLRVIMEAKL 808
+ +T+ W + + Y + S+T TPF V+ L +E+PS +
Sbjct: 1099 VCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALS-PLELPSFSDKTDENS 1157
Query: 809 SEA-EWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHP-REFKTGELVL-KRR 865
E + Q+ + LN + +MK FD K+ EF+ G+LV+ KR
Sbjct: 1158 QETIQVFQTVKEHLN--------------TNNIKMKKYFDMKIQEIEEFQPGDLVMVKRT 1203
Query: 866 ISQQPDPRGKWTPNYEGP-YVVKKA 889
+ K P++ GP YV++K+
Sbjct: 1204 KTGFLHKSNKLAPSFAGPFYVLQKS 1228
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 135 bits (339), Expect = 7e-31
Identities = 84/328 (25%), Positives = 164/328 (49%), Gaps = 21/328 (6%)
Query: 1 MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYK 60
MP+G+ A A +Q + T+ ++ V Y+D++++ S E +HV+++ + ++L+
Sbjct: 534 MPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNAN 593
Query: 61 LRLNPDKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYIS 120
L +N KC F K +G+ +S+KG + + + + P+ K++R FLG +NY+
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653
Query: 121 RFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYFA 180
+FI + P+ LL+K+ W +A ++IK L+ PP+L + +++
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETD 713
Query: 181 VFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVN 240
D ++G VL Q+ + K + + Y S K + + Y++ +K A+ + K RHYL
Sbjct: 714 ASDVAVGAVLSQKHD-DDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLE- 771
Query: 241 HTTWLISRMDPIKYIFEKAAVTGKI-----------ARWQMLLSEYDIVFKTQKAIKGSI 289
S ++P K + + + G+I ARWQ+ L +++ + +
Sbjct: 772 ------STIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPG-SANH 824
Query: 290 LADHLAYQPLDDYQPIEFDFPDEEIMYV 317
+AD L+ + +D+ +PI D D I +V
Sbjct: 825 IADALS-RIVDETEPIPKDSEDNSINFV 851
Score = 97.1 bits (240), Expect = 2e-19
Identities = 115/505 (22%), Positives = 209/505 (40%), Gaps = 53/505 (10%)
Query: 392 IDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQ 451
++ I+ I D +I +I E E + +L ++ + + E+++ P N
Sbjct: 770 LESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDF-----NFEINYRPGSANH 824
Query: 452 MADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVDNKPWYHDIKQ 511
+ADAL+ + PI K + V I D + V + + +D K
Sbjct: 825 IADALSRIVD-------ETEPIPKDSEDNSINFVNQISITDDFKNQVVTE---YTNDTKL 874
Query: 512 FLLSREYPPGASNKDKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHE 571
L +N+DK+ + L DG ++ + D +LL D ++ HE
Sbjct: 875 LNL-------LNNEDKRVEENIQ---LKDGLLINSK--DQILLPN-DTQLTRTIIKKYHE 921
Query: 572 GTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVPPHALNVIS-S 630
H ++ +LR + W + ++ + CH CQI + H P L I S
Sbjct: 922 EGKLIHPGIELLTNIILRR-FTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPS 980
Query: 631 PWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYT-NVTKQVVAKFIRNNII 689
P+ +D I + S+G+ + V +D F+K T ++T + A+ +I
Sbjct: 981 ERPWESLSMDFITALPE--SSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVI 1038
Query: 690 CRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGVVEAANKNIKRIVQK 749
+G P +II DN + + ++ S PYRPQ +G E N+ ++++++
Sbjct: 1039 AYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRC 1098
Query: 750 MVTTY-RDWHEMLPYALHGYRTTVRSSTGATPFSHVYGMEAVLPLEVEIPSLRVIMEAKL 808
+ +T+ W + + Y + S+T TPF V+ L +E+PS +
Sbjct: 1099 VCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALS-PLELPSFSDKTDENS 1157
Query: 809 SEA-EWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHP-REFKTGELVL-KRR 865
E + Q+ + LN + +MK FD K+ EF+ G+LV+ KR
Sbjct: 1158 QETIQVFQTVKEHLN--------------TNNIKMKKYFDMKIQEIEEFQPGDLVMVKRT 1203
Query: 866 ISQQPDPRGKWTPNYEGP-YVVKKA 889
+ K P++ GP YV++K+
Sbjct: 1204 KTGFLHKSNKLAPSFAGPFYVLQKS 1228
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 135 bits (339), Expect = 7e-31
Identities = 84/328 (25%), Positives = 164/328 (49%), Gaps = 21/328 (6%)
Query: 1 MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYK 60
MP+G+ A A +Q + T+ ++ V Y+D++++ S E +HV+++ + ++L+
Sbjct: 534 MPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNAN 593
Query: 61 LRLNPDKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYIS 120
L +N KC F K +G+ +S+KG + + + + P+ K++R FLG +NY+
Sbjct: 594 LIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLR 653
Query: 121 RFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYFA 180
+FI + P+ LL+K+ W +A ++IK L+ PP+L + +++
Sbjct: 654 KFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETD 713
Query: 181 VFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVN 240
D ++G VL Q+ + K + + Y S K + + Y++ +K A+ + K RHYL
Sbjct: 714 ASDVAVGAVLSQKHD-DDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLE- 771
Query: 241 HTTWLISRMDPIKYIFEKAAVTGKI-----------ARWQMLLSEYDIVFKTQKAIKGSI 289
S ++P K + + + G+I ARWQ+ L +++ + +
Sbjct: 772 ------STIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPG-SANH 824
Query: 290 LADHLAYQPLDDYQPIEFDFPDEEIMYV 317
+AD L+ + +D+ +PI D D I +V
Sbjct: 825 IADALS-RIVDETEPIPKDSEDNSINFV 851
Score = 97.1 bits (240), Expect = 2e-19
Identities = 115/505 (22%), Positives = 209/505 (40%), Gaps = 53/505 (10%)
Query: 392 IDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQ 451
++ I+ I D +I +I E E + +L ++ + + E+++ P N
Sbjct: 770 LESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDF-----NFEINYRPGSANH 824
Query: 452 MADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGDVIDQAGENVVDNKPWYHDIKQ 511
+ADAL+ + PI K + V I D + V + + +D K
Sbjct: 825 IADALSRIVD-------ETEPIPKDSEDNSINFVNQISITDDFKNQVVTE---YTNDTKL 874
Query: 512 FLLSREYPPGASNKDKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHE 571
L +N+DK+ + L DG ++ + D +LL D ++ HE
Sbjct: 875 LNL-------LNNEDKRVEENIQ---LKDGLLINSK--DQILLPN-DTQLTRTIIKKYHE 921
Query: 572 GTFGTHATGHTMSRKLLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVPPHALNVIS-S 630
H ++ +LR + W + ++ + CH CQI + H P L I S
Sbjct: 922 EGKLIHPGIELLTNIILRR-FTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPS 980
Query: 631 PWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYT-NVTKQVVAKFIRNNII 689
P+ +D I + S+G+ + V +D F+K T ++T + A+ +I
Sbjct: 981 ERPWESLSMDFITALPE--SSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVI 1038
Query: 690 CRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGVVEAANKNIKRIVQK 749
+G P +II DN + + ++ S PYRPQ +G E N+ ++++++
Sbjct: 1039 AYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRC 1098
Query: 750 MVTTY-RDWHEMLPYALHGYRTTVRSSTGATPFSHVYGMEAVLPLEVEIPSLRVIMEAKL 808
+ +T+ W + + Y + S+T TPF V+ L +E+PS +
Sbjct: 1099 VCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALS-PLELPSFSDKTDENS 1157
Query: 809 SEA-EWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHP-REFKTGELVL-KRR 865
E + Q+ + LN + +MK FD K+ EF+ G+LV+ KR
Sbjct: 1158 QETIQVFQTVKEHLN--------------TNNIKMKKYFDMKIQEIEEFQPGDLVMVKRT 1203
Query: 866 ISQQPDPRGKWTPNYEGP-YVVKKA 889
+ K P++ GP YV++K+
Sbjct: 1204 KTGFLHKSNKLAPSFAGPFYVLQKS 1228
>POL_MLVRD (P11227) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1196
Score = 134 bits (338), Expect = 8e-31
Identities = 205/888 (23%), Positives = 342/888 (38%), Gaps = 117/888 (13%)
Query: 31 YVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPDKCTFGVRSGKLLGFIVSQKGIEVD 90
YVDD+++ +T E + + + L R + K + K LG+++ + +
Sbjct: 342 YVDDLLLAATSELDCQQGTRALLKTLGNLGYRASAKKAQICQKQVKYLGYLLREGQRWLT 401
Query: 91 PDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPIVWNDECQ 150
+ + P P+T +Q+R FLG + +I P++ L + W + Q
Sbjct: 402 EARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPRFAEMAAPLYPLTKTGTLFNWGPDQQ 461
Query: 151 EAFDSIKNYLLEPPILVPPVEGRPLIMYFAVFDESMGCVLGQ-QDETGKKEHAIYYLSKK 209
+A+ IK LL P L P +P ++ DE G G + G + YLSKK
Sbjct: 462 KAYHEIKQALLTAPALGLPDLTKPFELFV---DEKQGYAKGVLTQKLGPWRRPVAYLSKK 518
Query: 210 FTDCETRYTMLEKTCCALAWAAKRLRHY--------LVNHTTWLISRMDPIKYIFEKAAV 261
+ + A+A K L H + + P +++
Sbjct: 519 LDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSN---- 574
Query: 262 TGKIARWQMLLSEYDIV-FKTQKAIKGSIL-------ADHLAYQPLDDYQPIEFDFPDEE 313
++ +Q +L + D V F A+ + L A H + L + E D D+
Sbjct: 575 -ARMTHYQAMLLDTDRVQFGPVVALNPATLLPLPEEGAPHDCLEILAETHGTEPDLTDQP 633
Query: 314 IMYVKSKDCEEPLIGEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFE 373
I PD + W + + GA + + AR L
Sbjct: 634 I----------------PDADHTWYTDGSSFLQEGQRKAGAAVTTETE---VIWARALPA 674
Query: 374 CTNNMAEYEACIFGIEEAIDMRI-KHLDIYGDS--ALVINQIKGEWETHHAKLIPYRDYA 430
T+ A + + +A+ M K L++Y DS A I GE Y
Sbjct: 675 GTSAQ---RAELIALTQALKMAEGKRLNVYTDSRYAFATAHIHGEI------------YK 719
Query: 431 RRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQRLERPSHVFAIGD 490
RR L L R+ ++ LA L ++F + II ++ A G+
Sbjct: 720 RRGL-------LTSEGREIKNKSEILALLKALFLPKR---LSIIHCLGHQKGDSAEARGN 769
Query: 491 -VIDQAGENVVDNKPWYHDIKQFLL--SREYPPGA---SNKDKKTLRRLASRFLLDGDIL 544
+ DQA P D L+ S Y P + D K LR L + +
Sbjct: 770 RLADQAAREAAIKTP--PDTSTLLIEDSTPYTPAYFHYTETDLKKLRELGATYNQSKGYW 827
Query: 545 YKRNYDMVLLRCVDEHEAEQLMHDVHEGTFGTHATGHTMSRKLLRAG---YYWMTMEHDC 601
+ ++ + V E L+ +H T G+ + LL G YY + +
Sbjct: 828 VFQGKPVMPDQFVFE-----LLDSLHRLTH----LGYQKMKALLDRGESPYYMLNRDKTL 878
Query: 602 YQHARKCHKC-QIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAI 660
A C C Q+ A K + + P + W ID ++P G++++LV +
Sbjct: 879 QYVADSCTVCAQVNASKAKIGAGVR--VRGHRPGTHWEIDFT-EVKP-GLYGYKYLLVFV 934
Query: 661 DYFTKWVEAASYTNVTKQVVAKFIRNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKI 720
D F+ WVEA + T ++V K + I R+G+P + TDNG + V Q++ + I
Sbjct: 935 DTFSGWVEAFPTKHETAKIVTKKLLEEIFPRFGMPQVLGTDNGPAFVSQVSQSVAKLLGI 994
Query: 721 EHHNSSPYRPQMNGVVEAANKNIKRIVQK--MVTTYRDWHEMLPYALHGYRTTVRSSTGA 778
+ YRPQ +G VE N+ IK + K + T RDW +LP AL+ R T G
Sbjct: 995 DWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGTRDWVLLLPLALYRARNT-PGPHGL 1053
Query: 779 TPFSHVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSY 838
TP+ +YG L + P + +K + + Q+ L ++ + +A +Y
Sbjct: 1054 TPYEILYGAPPPL-VNFHDPEM-----SKFTNSPSLQAHLQALQAVQREVWKPLA--AAY 1105
Query: 839 QARMKTAFDKKVHPREFKTGELVLKRRISQQPDPRGKWTPNYEGPYVV 886
Q ++ D+ V P F+ G+ V RR + P ++GPY V
Sbjct: 1106 QDQL----DQPVIPHPFRVGDTVWVRRHQTK-----NLEPRWKGPYTV 1144
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 130 bits (327), Expect = 2e-29
Identities = 78/301 (25%), Positives = 148/301 (48%), Gaps = 8/301 (2%)
Query: 1 MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYK 60
+PFGL+ + A +Q M + D++ VYVDD+++ S D EQH++ + + R+RK
Sbjct: 1064 LPFGLVISPALFQGTMEEIIGDLLGVCAFVYVDDLLIASKDMEQHLQDVKEALTRIRKSG 1123
Query: 61 LRLNPDKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYIS 120
++L KC + + LG V+ G+E K +++ P K+++ FLG + Y
Sbjct: 1124 MKLRASKCHIAKKEVEYLGHKVTLDGVETQEVKTDKMKQFSRPTNVKELQSFLGLVGYYR 1183
Query: 121 RFISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILV-PPVEG-----RP 174
+FI + + L+ +W E + AF +K + + P+L P VE RP
Sbjct: 1184 KFILNFAQIASSLTSLISAKVAWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAALKGDRP 1243
Query: 175 LIMYFAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRL 234
++Y + +G VL Q+ G ++H I + SK + ETRY + + A+ +A +R
Sbjct: 1244 FMIYTDASRKGIGAVLAQEGPDG-QQHPIAFASKALSPAETRYHITDLEALAMMFALRRF 1302
Query: 235 RHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHL 294
+ + + + P+ + + + + ++ RW + + E+D+ A K + +AD L
Sbjct: 1303 KTIIYGTAITVFTDHKPLISLLKGSPLADRLWRWSIEILEFDVKI-VYLAGKANAVADAL 1361
Query: 295 A 295
+
Sbjct: 1362 S 1362
Score = 106 bits (264), Expect = 3e-22
Identities = 141/605 (23%), Positives = 244/605 (40%), Gaps = 59/605 (9%)
Query: 311 DEEIMYVKSKD--CEEPLIGEGPDPNS--KWGLVFDGAVNAYGKGIGAVIVSP----QGH 362
++EI + + K C+ P++ + PD + K F +A KGIGAV+ Q H
Sbjct: 1211 EQEIAFQELKKLVCQTPVLAQ-PDVEAALKGDRPFMIYTDASRKGIGAVLAQEGPDGQQH 1269
Query: 363 HIPFTARILF--ECTNNMAEYEAC--IFGIEEAIDMRIKHLDIYGDSALVINQIKGEWET 418
I F ++ L E ++ + EA +F + R K + IYG + V K
Sbjct: 1270 PIAFASKALSPAETRYHITDLEALAMMFALR-----RFKTI-IYGTAITVFTDHKPLISL 1323
Query: 419 HHAKLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIKVQR 478
+ R + + V++ ++ N +ADAL+ P +++
Sbjct: 1324 LKGSPLADRLWRWSIEILEFDVKIVYLAGKANAVADALSR----------GGCPPNELEE 1373
Query: 479 LERPSHVFAIGDVIDQAGENVVDNKPWYHDIK-------QFLLSREYPPGASNKDKKTLR 531
E+ + +I + I +++D+ W +K + + + E G K +
Sbjct: 1374 -EQTKELTSIVNAIQTELPDILDSSCWLERLKGEDEGWKEVIAALE---GGKTKGTFKIV 1429
Query: 532 RLASRFLLD-----GDILYKRNYDMVLLRCVDEHEAEQLMHDVHEGTFGTHATGHTMSRK 586
+ S L+ G +L + V E L+ ++HEG H M R
Sbjct: 1430 GIESEISLEYYKIVGGVLKNTEIEEQSRSVVPEKIRTPLLKELHEGMLAGHFGIKKMWRM 1489
Query: 587 LLRAGYYWMTMEHDCYQHARKCHKCQIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIE 646
+ R +YW M R C KC D + +L +P + D++
Sbjct: 1490 VHRK-FYWPQMRVCVENCVRTCAKCLCANDHSKLTS-SLTPYRMTFPLEIVACDLMD--V 1545
Query: 647 PKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAK-FIRNNIICRYGVPSKIITDNGTN 705
+ G+R+IL ID FTK+ A + + V K F+ I +P K++TD G
Sbjct: 1546 GLSVQGNRYILTIIDLFTKYGTAVPIPDKKAETVLKAFVERWAIGEGRIPLKLLTDQGKE 1605
Query: 706 LNNNVVQALCEEFKIEHHNSSPYRPQMNGVVEAANKNIKRIVQKMVTTYRDWHEMLPYAL 765
N + KIEH + Y + NG VE NK I I++K +W + + YA+
Sbjct: 1606 FVNGLFAQFTHMLKIEHITTKGYNSRANGAVERFNKTIMHIMKKKTAVPMEWDDQVVYAV 1665
Query: 766 HGYRTTVRSSTGATPFSHVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIE 825
+ Y V +TG TP ++G + + PLE+ I A + E + ++ + L + +
Sbjct: 1666 YAYNNCVHENTGETPMFLMHGRDVMGPLEMSGEDAVGINYADMDEYKHLLTQ-ELLKVQK 1724
Query: 826 EKRMDAMARGQSYQARMKTAFDKKVH----PREFKTGELVLKRRISQQPDPRGKWTPNYE 881
+ AM +SY++ + K H P E+ ++ +Q P KW+
Sbjct: 1725 IAKEHAMREQESYKSLFDQKYASKKHRFPQPGSRVLLEIPSEKLGAQCPKLVNKWS---- 1780
Query: 882 GPYVV 886
GPY V
Sbjct: 1781 GPYRV 1785
>POLY_DROME (P10401) Retrovirus-related Pol polyprotein from
transposon gypsy [Contains: Reverse transcriptase (EC
2.7.7.49); Endonuclease]
Length = 1035
Score = 130 bits (327), Expect = 2e-29
Identities = 94/317 (29%), Positives = 153/317 (47%), Gaps = 22/317 (6%)
Query: 1 MPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYK 60
+PFGL NA + +QR + + + I K VYVDD+I+ S +E HV ++ + + L
Sbjct: 309 LPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDAN 368
Query: 61 LRLNPDKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYIS 120
+R++ +K F S + LGFIVS+ G + DP+KV+AI+E P P +VR FLG +Y
Sbjct: 369 MRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYR 428
Query: 121 RFISHMTATCGPIFKLLR-----------KNQPIVWNDECQEAFDSIKNYLL-EPPILVP 168
FI A PI +L+ K P+ +N+ + AF ++N L E IL
Sbjct: 429 VFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKY 488
Query: 169 PVEGRPLIMYFAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALA 228
P +P + +G VL Q+ I +S+ E Y E+ A+
Sbjct: 489 PDFKKPFDLTTDASASGIGAVLSQEG------RPITMISRTLKQPEQNYATNERELLAIV 542
Query: 229 WAAKRLRHYLV-NHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDI-VFKTQKAIK 286
WA +L+++L + + + P+ + KI RW+ + +++ VF K K
Sbjct: 543 WALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKVF--YKPGK 600
Query: 287 GSILADHLAYQPLDDYQ 303
+ +AD L+ Q L+ Q
Sbjct: 601 ENFVADALSRQNLNALQ 617
>POL_MLVFF (P26809) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 101 bits (251), Expect = 1e-20
Identities = 87/298 (29%), Positives = 134/298 (44%), Gaps = 25/298 (8%)
Query: 592 YYWMTMEHDCYQHARKCHKC-QIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKAS 650
YY + + C C Q+ A K V + P + W ID ++P
Sbjct: 874 YYMLNRDRTLKDITETCQACAQVNASKSAVKQGTR--VRGHRPGTHWEIDFT-EVKP-GL 929
Query: 651 NGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIRNNIICRYGVPSKIITDNGTNLNNNV 710
G++++LV ID F+ WVEA T +VV K + I R+G+P + TDNG + V
Sbjct: 930 YGYKYLLVFIDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKV 989
Query: 711 VQALCEEFKIEHHNSSPYRPQMNGVVEAANKNIKRIVQK--MVTTYRDWHEMLPYALHGY 768
Q + + ++ YRPQ +G VE N+ IK + K + T RDW +LP AL+
Sbjct: 990 SQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRA 1049
Query: 769 RTTVRSSTGATPFSHVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKR 828
R T G TP+ +YG P V P + AK++ Q+ L L++ +
Sbjct: 1050 RNT-PGPHGLTPYEILYGAP---PPLVNFPDPDM---AKVTHNPSLQAHLQALYLVQHEV 1102
Query: 829 MDAMARGQSYQARMKTAFDKKVHPREFKTGELVLKRRISQQPDPRGKWTPNYEGPYVV 886
+A +YQ ++ D+ V P F+ G+ V RR + P ++GPY V
Sbjct: 1103 WRPLA--AAYQEQL----DRPVVPHPFRVGDTVWVRRHQTK-----NLEPRWKGPYTV 1149
Score = 65.1 bits (157), Expect = 8e-10
Identities = 48/205 (23%), Positives = 85/205 (41%), Gaps = 16/205 (7%)
Query: 18 TLFHDMIHKEVE------------VYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNP 65
TLF + +H+++ YVDD+++ +T E + + + L R +
Sbjct: 322 TLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGDLGYRASA 381
Query: 66 DKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISH 125
K + K LG+++ + + + + P P+T +Q+R FLG + +I
Sbjct: 382 KKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPG 441
Query: 126 MTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYFAVFDES 185
P++ L + W + Q+A+ IK LL P L P +P ++ DE
Sbjct: 442 FAEMAAPLYPLTKTGTLFEWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELF---VDEK 498
Query: 186 MGCVLG-QQDETGKKEHAIYYLSKK 209
G G + G + YLSKK
Sbjct: 499 QGYAKGVLTQKLGPWRRPVAYLSKK 523
>POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 100 bits (249), Expect = 2e-20
Identities = 86/298 (28%), Positives = 134/298 (44%), Gaps = 25/298 (8%)
Query: 592 YYWMTMEHDCYQHARKCHKC-QIYADKIHVPPHALNVISSPWPFSMWGIDMIGRIEPKAS 650
YY + + C C Q+ A K V + P + W ID ++P
Sbjct: 874 YYMLNRDRTLKDITETCKACAQVNASKSAVKQGTR--VRGHRPGTHWEIDFT-EVKP-GL 929
Query: 651 NGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIRNNIICRYGVPSKIITDNGTNLNNNV 710
G++++LV +D F+ WVEA T +VV K + I R+G+P + TDNG + V
Sbjct: 930 YGYKYLLVFVDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKV 989
Query: 711 VQALCEEFKIEHHNSSPYRPQMNGVVEAANKNIKRIVQK--MVTTYRDWHEMLPYALHGY 768
Q + + ++ YRPQ +G VE N+ IK + K + T RDW +LP AL+
Sbjct: 990 SQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRA 1049
Query: 769 RTTVRSSTGATPFSHVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKR 828
R T G TP+ +YG P V P + AK++ Q+ L L++ +
Sbjct: 1050 RNT-PGPHGLTPYEILYGAP---PPLVNFPDPDM---AKVTHNPSLQAHLQALYLVQHEV 1102
Query: 829 MDAMARGQSYQARMKTAFDKKVHPREFKTGELVLKRRISQQPDPRGKWTPNYEGPYVV 886
+A +YQ ++ D+ V P F+ G+ V RR + P ++GPY V
Sbjct: 1103 WRPLA--AAYQEQL----DRPVVPHPFRVGDTVWVRRHQTK-----NLEPRWKGPYTV 1149
Score = 65.1 bits (157), Expect = 8e-10
Identities = 48/205 (23%), Positives = 85/205 (41%), Gaps = 16/205 (7%)
Query: 18 TLFHDMIHKEVE------------VYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNP 65
TLF + +H+++ YVDD+++ +T E + + + L R +
Sbjct: 322 TLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGDLGYRASA 381
Query: 66 DKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISH 125
K + K LG+++ + + + + P P+T +Q+R FLG + +I
Sbjct: 382 KKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPG 441
Query: 126 MTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYFAVFDES 185
P++ L + W + Q+A+ IK LL P L P +P ++ DE
Sbjct: 442 FAEMAAPLYPLTKTGTLFKWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELF---VDEK 498
Query: 186 MGCVLG-QQDETGKKEHAIYYLSKK 209
G G + G + YLSKK
Sbjct: 499 QGYAKGVLTQKLGPWRRPVAYLSKK 523
>POL3_MOUSE (P11367) Retrovirus-related Pol polyprotein
(Endonuclease) (Fragment)
Length = 390
Score = 100 bits (248), Expect = 2e-20
Identities = 88/316 (27%), Positives = 145/316 (45%), Gaps = 27/316 (8%)
Query: 576 THATGHTMSRKLLR--AGYYWMTMEHDCYQHARKCHKC-QIYADKIHVPPHALNVISSPW 632
TH + M L R + YY + + ++ A C C Q+ A K + A +
Sbjct: 60 THLSYQKMRALLDRKESPYYMLNKDKILHEVAESCQACVQVNASKTKI--RAGTRVRGHR 117
Query: 633 PFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIRNNIICRY 692
+ W ID ++P G++++LV +D F+ WVEA + T ++V K + I R+
Sbjct: 118 LGTHWEIDFT-EVKP-GLYGYKYLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRF 175
Query: 693 GVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGVVEAANKNIKRIVQK--M 750
G+P + TDNG + V Q++ + I+ YRPQ +G VE N+ IK + K +
Sbjct: 176 GMPQVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTL 235
Query: 751 VTTYRDWHEMLPYALHGYRTTVRSSTGATPFSHVYGMEAVLPLEVEIPSLRVIMEAKLSE 810
T RDW +LP AL+ R T G TP+ +YG L + P + +K +
Sbjct: 236 ATGTRDWVLLLPLALYRARNT-PGPHGLTPYEILYGAPPPL-VNFHDPEM-----SKFTN 288
Query: 811 AEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKTGELVLKRRISQQP 870
+ Q+ L ++ + +A +YQ ++ D+ V P F+ G+ V RR +
Sbjct: 289 SPSLQAHLQALQAVQREVWKPLA--AAYQDQL----DQPVIPHPFRVGDTVWVRRHQTK- 341
Query: 871 DPRGKWTPNYEGPYVV 886
P ++GPY V
Sbjct: 342 ----NLEPRWKGPYTV 353
>POL_MLVRK (P31795) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] (Fragment)
Length = 581
Score = 99.8 bits (247), Expect = 3e-20
Identities = 87/313 (27%), Positives = 142/313 (44%), Gaps = 28/313 (8%)
Query: 580 GHTMSRKLLRAG---YYWMTMEHDCYQHARKCHKC-QIYADKIHVPPHALNVISSPWPFS 635
G+ + LL G YY + + A C C Q+ A K + + P +
Sbjct: 239 GYQKMKALLDRGESPYYMLNRDKTLQYVADSCTVCAQVNASKAKIGAGVR--VRGHRPGT 296
Query: 636 MWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIRNNIICRYGVP 695
W ID ++P G++++LV +D F+ WVEA + T ++V K + I R+G+P
Sbjct: 297 HWEIDFT-EVKP-GLYGYKYLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRFGMP 354
Query: 696 SKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGVVEAANKNIKRIVQK--MVTT 753
+ TDNG + V Q++ + I+ YRPQ +G VE N+ IK + K + T
Sbjct: 355 QVLGTDNGPAFVSQVSQSVAKLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATG 414
Query: 754 YRDWHEMLPYALHGYRTTVRSSTGATPFSHVYGMEAVLPLEVEIPSLRVIMEAKLSEAEW 813
RDW +LP AL+ R T G TP+ +YG L + P + +K + +
Sbjct: 415 TRDWVLLLPLALYRARNT-PGPHGLTPYEILYGAPPPL-VNFHDPEM-----SKFTNSPS 467
Query: 814 CQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKTGELVLKRRISQQPDPR 873
Q+ L ++ + +A +YQ ++ D+ V P F+ G+ V RR +
Sbjct: 468 LQAHLQALQAVQREVWKPLA--AAYQDQL----DQPVIPHPFRVGDTVWVRRHQTK---- 517
Query: 874 GKWTPNYEGPYVV 886
P ++GPY V
Sbjct: 518 -NLEPRWKGPYTV 529
>POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1199
Score = 99.4 bits (246), Expect = 4e-20
Identities = 90/316 (28%), Positives = 141/316 (44%), Gaps = 27/316 (8%)
Query: 576 THATGHTMSRKLLRAG--YYWMTMEHDCYQHARKCHKC-QIYADKIHVPPHALNVISSPW 632
TH + M L R+ YY + + C C Q+ A K V +
Sbjct: 851 THLSFSKMKALLERSHSPYYMLNRDRTLKNITETCKACAQVNASKSAVKQGTR--VRGHR 908
Query: 633 PFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIRNNIICRY 692
P + W ID I+P G++++LV ID F+ W+EA T +VV K + I R+
Sbjct: 909 PGTHWEIDFT-EIKP-GLYGYKYLLVFIDTFSGWIEAFPTKKETAKVVTKKLLEEIFPRF 966
Query: 693 GVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGVVEAANKNIKRIVQK--M 750
G+P + TDNG + V Q + + I+ YRPQ +G VE N+ IK + K +
Sbjct: 967 GMPQVLGTDNGPAFVSKVSQTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTL 1026
Query: 751 VTTYRDWHEMLPYALHGYRTTVRSSTGATPFSHVYGMEAVLPLEVEIPSLRVIMEAKLSE 810
T RDW +LP AL+ R T G TP+ +YG P V P + +++
Sbjct: 1027 ATGSRDWVLLLPLALYRARNT-PGPHGLTPYEILYGAP---PPLVNFPDPDM---TRVTN 1079
Query: 811 AEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKTGELVLKRRISQQP 870
+ Q+ L L++ + +A +YQ ++ D+ V P ++ G+ V RR +
Sbjct: 1080 SPSLQAHLQALYLVQHEVWRPLA--AAYQEQL----DRPVVPHPYRVGDTVWVRRHQTK- 1132
Query: 871 DPRGKWTPNYEGPYVV 886
P ++GPY V
Sbjct: 1133 ----NLEPRWKGPYTV 1144
Score = 65.1 bits (157), Expect = 8e-10
Identities = 48/205 (23%), Positives = 85/205 (41%), Gaps = 16/205 (7%)
Query: 18 TLFHDMIHKEVE------------VYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNP 65
TLF + +H+++ YVDD+++ +T E + + + L R +
Sbjct: 317 TLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRASA 376
Query: 66 DKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISH 125
K + K LG+++ + + + + P P+T +Q+R FLG + +I
Sbjct: 377 KKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPG 436
Query: 126 MTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYFAVFDES 185
P++ L + W + Q+A+ IK LL P L P +P ++ DE
Sbjct: 437 FAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELF---VDEK 493
Query: 186 MGCVLG-QQDETGKKEHAIYYLSKK 209
G G + G + YLSKK
Sbjct: 494 QGYAKGVLTQKLGPWRRPVAYLSKK 518
>POL_MLVF5 (P26810) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 98.6 bits (244), Expect = 7e-20
Identities = 78/256 (30%), Positives = 122/256 (47%), Gaps = 22/256 (8%)
Query: 633 PFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIRNNIICRY 692
P + W ID ++P G++++LV +D F+ WVEA T +VV K + I R+
Sbjct: 914 PGTHWEIDFT-EVKP-GLYGYKYLLVFVDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRF 971
Query: 693 GVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGVVEAANKNIKRIVQK--M 750
G+P + TDNG + V Q + + ++ YRPQ +G VE N+ IK + K +
Sbjct: 972 GMPQVLGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTL 1031
Query: 751 VTTYRDWHEMLPYALHGYRTTVRSSTGATPFSHVYGMEAVLPLEVEIPSLRVIMEAKLSE 810
T RDW +LP AL+ R T G TP+ +YG P V P + AK++
Sbjct: 1032 ATGSRDWVLLLPLALYRARNT-PGPHGLTPYEILYGAP---PPLVNFPDPDM---AKVTH 1084
Query: 811 AEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKTGELVLKRRISQQP 870
Q+ L L++ + +A +YQ ++ D+ V P F+ G+ V RR +
Sbjct: 1085 NPSLQAHLQALYLVQHEVWRPLA--AAYQEQL----DRPVVPHPFRVGDTVWVRRHQTK- 1137
Query: 871 DPRGKWTPNYEGPYVV 886
P ++GPY V
Sbjct: 1138 ----NLEPRWKGPYTV 1149
Score = 63.5 bits (153), Expect = 2e-09
Identities = 48/205 (23%), Positives = 84/205 (40%), Gaps = 16/205 (7%)
Query: 18 TLFHDMIHKEVE------------VYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNP 65
TLF + +H+++ YVDD+++ +T E + + + L R +
Sbjct: 322 TLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATSELDCQQGTRALLQTLGDLGYRASA 381
Query: 66 DKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISH 125
K + K LG+++ + + + + P P+T +Q+R FLG +I
Sbjct: 382 KKAQICQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGLCRLWIPG 441
Query: 126 MTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYFAVFDES 185
P++ L + W + Q+A+ IK LL P L P +P ++ DE
Sbjct: 442 FAEMAAPLYPLTKTGTLFKWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELF---VDEK 498
Query: 186 MGCVLG-QQDETGKKEHAIYYLSKK 209
G G + G + YLSKK
Sbjct: 499 QGYAKGVLTQKLGPWRRPVAYLSKK 523
>POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1196
Score = 98.6 bits (244), Expect = 7e-20
Identities = 86/313 (27%), Positives = 143/313 (45%), Gaps = 28/313 (8%)
Query: 580 GHTMSRKLLRAG---YYWMTMEHDCYQHARKCHKC-QIYADKIHVPPHALNVISSPWPFS 635
G+ + LL G YY + + A C C Q+ A K + + P S
Sbjct: 854 GYQKMKALLDRGESPYYMLNRDKTLQYVADSCTVCAQVNASKAKIGAGVR--VRGHRPGS 911
Query: 636 MWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIRNNIICRYGVP 695
W ID ++P G++++LV +D F+ WVEA T +VV+K + I R+G+P
Sbjct: 912 HWEIDFT-EVKP-GLYGYKYLLVFVDTFSGWVEAFPTKRETARVVSKKLLEEIFPRFGMP 969
Query: 696 SKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGVVEAANKNIKRIVQKMVTT-- 753
+ +DNG + V Q++ + I+ YRPQ +G VE N+ IK + K+
Sbjct: 970 QVLGSDNGPAFTSQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLAAG 1029
Query: 754 YRDWHEMLPYALHGYRTTVRSSTGATPFSHVYGMEAVLPLEVEIPSLRVIMEAKLSEAEW 813
RDW +LP AL+ R T G TP+ +YG L + P + ++L+ +
Sbjct: 1030 TRDWVLLLPLALYRARNT-PGPHGLTPYEILYGAPPPL-VNFHDPDM-----SELTNSPS 1082
Query: 814 CQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKTGELVLKRRISQQPDPR 873
Q+ L ++ + +A ++Y+ ++ D+ V P F+ G+ V RR +
Sbjct: 1083 LQAHLQALQTVQREIWKPLA--EAYRDQL----DQPVIPHPFRIGDSVWVRRHQTK---- 1132
Query: 874 GKWTPNYEGPYVV 886
P ++GPY V
Sbjct: 1133 -NLEPRWKGPYTV 1144
Score = 62.8 bits (151), Expect = 4e-09
Identities = 48/205 (23%), Positives = 84/205 (40%), Gaps = 16/205 (7%)
Query: 18 TLFHDMIHKEVE------------VYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNP 65
TLF + +H+++ YVDD+++ +T E + + L R +
Sbjct: 317 TLFDEALHRDLADFRIQHPDLILLQYVDDILLAATSELDCQQGTRALLLTLGNLGYRASA 376
Query: 66 DKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISH 125
K + K LG+++ + + + + P P+T +Q+R FLG + +I
Sbjct: 377 KKAQLCQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRLWIPG 436
Query: 126 MTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYFAVFDES 185
P++ L + W + Q+A+ IK LL P L P +P ++ DE
Sbjct: 437 FAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELF---VDEK 493
Query: 186 MGCVLG-QQDETGKKEHAIYYLSKK 209
G G + G + YLSKK
Sbjct: 494 QGYAKGVLTQKLGPWRRPVAYLSKK 518
>POL_MLVAK (P03357) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 843
Score = 96.3 bits (238), Expect = 3e-19
Identities = 86/313 (27%), Positives = 145/313 (45%), Gaps = 29/313 (9%)
Query: 580 GHTMSRKLLRAG---YYWMTMEHDCYQHARKCHKC-QIYADKIHVPPHALNVISSPWPFS 635
G+ + LL G YY + + A C C Q+ A K + + P S
Sbjct: 502 GYQKMKALLDRGESPYYMLNRDKTLQYVADSCTVCAQVNASKAKIGAGVR--VRGHRPGS 559
Query: 636 MWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIRNNIICRYGVP 695
W ID ++P G++++LV +D F+ WVEA T +VV+K + I R+G+P
Sbjct: 560 HWEIDFT-EVKP-GLYGYKYLLVFVDTFSGWVEAFPTKRETARVVSKKLLEEIFPRFGMP 617
Query: 696 SKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGVVEAANKNIKRIVQKMVTT-- 753
+ +DNG + V Q++ + I+ + + YRPQ +G VE N+ IK + K+
Sbjct: 618 QVLGSDNGPAFTSQVSQSVADLLGIDKLHCA-YRPQSSGQVERMNRTIKETLTKLTLAAG 676
Query: 754 YRDWHEMLPYALHGYRTTVRSSTGATPFSHVYGMEAVLPLEVEIPSLRVIMEAKLSEAEW 813
RDW +LP AL+ R T G TP+ +YG L + P + ++L+ +
Sbjct: 677 TRDWVLLLPLALYRARNT-PGPHGLTPYEILYGAPPPL-VNFHDPDM-----SELTNSPS 729
Query: 814 CQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKTGELVLKRRISQQPDPR 873
Q+ L ++ + +A ++Y+ ++ D+ V P F+ G+ V RR +
Sbjct: 730 LQAHLQALQTVQREIWKPLA--EAYRDQL----DQPVIPHPFRIGDSVWVRRHQTK---- 779
Query: 874 GKWTPNYEGPYVV 886
P ++GPY V
Sbjct: 780 -NLEPRWKGPYTV 791
Score = 53.1 bits (126), Expect = 3e-06
Identities = 37/149 (24%), Positives = 62/149 (40%), Gaps = 4/149 (2%)
Query: 62 RLNPDKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISR 121
R + K + K LG+++ + + + + P P+T +Q+R FLG +
Sbjct: 21 RASAKKAQLCQKQVKYLGYLLKEGQRWLTEARKETVMGQPTPKTPRQLREFLGTAGFCRL 80
Query: 122 FISHMTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYFAV 181
+I P++ L + W + Q+A+ IK LL P L P +P ++
Sbjct: 81 WIPGFAEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELF--- 137
Query: 182 FDESMGCVLG-QQDETGKKEHAIYYLSKK 209
DE G G + G + YLSKK
Sbjct: 138 VDEKQGYAKGVLTQKLGPWRRPVAYLSKK 166
>POL_MLVCB (P08361) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 282
Score = 94.4 bits (233), Expect = 1e-18
Identities = 70/237 (29%), Positives = 114/237 (47%), Gaps = 20/237 (8%)
Query: 652 GHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIRNNIICRYGVPSKIITDNGTNLNNNVV 711
G++++LV +D F+ W+EA T +VV K + I R+G+P + TDNG + V
Sbjct: 12 GYKYLLVFVDTFSGWIEAFPTKKETAKVVTKKLLEEIFPRFGMPQVLGTDNGPAFVSKVS 71
Query: 712 QALCEEFKIEHHNSSPYRPQMNGVVEAANKNIKRIVQK--MVTTYRDWHEMLPYALHGYR 769
Q + + I+ YRPQ +G VE N+ IK + K + T RDW +LP AL+ R
Sbjct: 72 QTVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSRDWVLLLPLALYRAR 131
Query: 770 TTVRSSTGATPFSHVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRM 829
T G TP+ +YG P V P + +++ + Q+ L L++ +
Sbjct: 132 NT-PGPHGLTPYEILYGAP---PPLVNFPDPDM---TRVTNSPSLQAHLQALYLVQHEVW 184
Query: 830 DAMARGQSYQARMKTAFDKKVHPREFKTGELVLKRRISQQPDPRGKWTPNYEGPYVV 886
+A +YQ ++ D+ V P ++ G+ V RR + P ++GPY V
Sbjct: 185 RPLA--AAYQEQL----DRPVVPHPYRVGDTVWVRRHQTK-----NLEPRWKGPYTV 230
>POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1165
Score = 93.6 bits (231), Expect = 2e-18
Identities = 62/228 (27%), Positives = 103/228 (44%), Gaps = 16/228 (7%)
Query: 18 TLFHDMIHKEVEV------------YVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNP 65
TLF + +H+++ YVDD++V + E + K+ + L K R++
Sbjct: 314 TLFDEALHRDLAPFRALNPQVVLLQYVDDLLVAAPTYEDCKKGTQKLLQELSKLGYRVSA 373
Query: 66 DKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISH 125
K R LG+++ + + P + + ++P P T +QVR FLG + +I
Sbjct: 374 KKAQLCQREVTYLGYLLKEGKRWLTPARKATVMKIPVPTTPRQVREFLGTAGFCRLWIPG 433
Query: 126 MTATCGPIFKLLRKNQPIVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYFAVFDES 185
+ P++ L +++ P +W +E Q+AFD IK LL P L P +P +Y DE
Sbjct: 434 FASLAAPLYPLTKESIPFIWTEEHQQAFDHIKKALLSAPALALPDLTKPFTLY---IDER 490
Query: 186 MGCVLGQQDET-GKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAK 232
G G +T G + YLSKK + + K A+A K
Sbjct: 491 AGVARGVLTQTLGPWRRPVAYLSKKLDPVASGWPTCLKAVAAVALLLK 538
Score = 82.0 bits (201), Expect = 7e-15
Identities = 55/156 (35%), Positives = 77/156 (49%), Gaps = 5/156 (3%)
Query: 633 PFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIRNNIICRY 692
P W +D I+P G++++LV ID F+ WVEA T +V K I I+ R+
Sbjct: 876 PGVYWEVDFT-EIKP-GRYGNKYLLVFIDTFSGWVEAFPTKTETALIVCKKILEEILPRF 933
Query: 693 GVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGVVEAANKNIKRIVQKMV- 751
G+P + +DNG V Q L + I YRPQ +G VE N+ IK + K+
Sbjct: 934 GIPKVLGSDNGPAFVAQVSQGLATQLGINWKLHCAYRPQSSGQVERMNRTIKETLTKLAL 993
Query: 752 -TTYRDWHEMLPYALHGYRTTVRSSTGATPFSHVYG 786
T +DW +LP AL R T G TP+ +YG
Sbjct: 994 ETGGKDWVTLLPLALLRARNT-PGRFGLTPYEILYG 1028
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.322 0.138 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,827,248
Number of Sequences: 164201
Number of extensions: 5029979
Number of successful extensions: 10940
Number of sequences better than 10.0: 135
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 10700
Number of HSP's gapped (non-prelim): 191
length of query: 919
length of database: 59,974,054
effective HSP length: 119
effective length of query: 800
effective length of database: 40,434,135
effective search space: 32347308000
effective search space used: 32347308000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 71 (32.0 bits)
Medicago: description of AC146807.4