BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146807.10 - phase: 0 
         (234 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TM34_MOUSE (Q99PP6) Tripartite motif-containing protein 34             31  2.9
SIS2_CANTR (Q12600) SIS2 protein (Halotolerance protein HAL3)          31  2.9
C5P2_MACFA (Q9BE52) CDK5 regulatory subunit associated protein 2...    31  2.9
C5P2_HUMAN (Q96SN8) CDK5 regulatory subunit associated protein 2...    30  3.8
TRMA_PANTR (Q7YR32) Tripartite motif-containing protein 10 (RING...    30  6.4
RRPO_ROTS1 (P22678) RNA-directed RNA polymerase subunit VP1 (EC ...    29  8.4
RIR1_BUCAI (P57276) Ribonucleoside-diphosphate reductase alpha c...    29  8.4

>TM34_MOUSE (Q99PP6) Tripartite motif-containing protein 34
          Length = 485

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 19/53 (35%), Positives = 29/53 (53%), Gaps = 1/53 (1%)

Query: 155 VCRKSVKHLGVRSGIAHEAYTQWNLMLKKELVKVRRELEEKDELLMRDSKRAR 207
           VC +S +H G  + +  EA  +    L+K L ++R+E +EK E L  D K  R
Sbjct: 117 VCERSQEHRGHHTFLWEEAVRECQENLQKALTRLRKE-QEKVETLEADIKEDR 168


>SIS2_CANTR (Q12600) SIS2 protein (Halotolerance protein HAL3)
          Length = 531

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 125 PINLATSPEFFYYSNAPTGQREAFIG---AWSKVCRKSVKHLGVRSGIAHEAYTQWNLML 181
           PI LA + +   YS++ T ++   I     W +V +   K  G    I     T WN ++
Sbjct: 392 PILLAPAMDSHSYSSSTTKRQLRLIADDMPWIEVLKPLEKVFGSYGDIGMGGMTDWNEIV 451

Query: 182 KKELVKVRRELEEKDELLMRDSK 204
            + ++K+    E++DE    DSK
Sbjct: 452 NRIVMKLGGYPEDEDEDEADDSK 474


>C5P2_MACFA (Q9BE52) CDK5 regulatory subunit associated protein 2
           (CDK5 activator-binding protein C48) (QflA-15432)
          Length = 862

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 178 NLMLKKELVKVRRELEEKDELLMRDSKRARGRCNFYARYCGSDSESESED 227
           N+ LK E+  ++REL+E++ LL+R SK         A   GS+ +   ED
Sbjct: 103 NIELKVEVESLKRELQERERLLIRASKAVES----LAEAGGSEIQRVKED 148


>C5P2_HUMAN (Q96SN8) CDK5 regulatory subunit associated protein 2
           (CDK5 activator-binding protein C48)
          Length = 1893

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 4/50 (8%)

Query: 178 NLMLKKELVKVRRELEEKDELLMRDSKRARGRCNFYARYCGSDSESESED 227
           N+ LK E+  ++REL+E+++LL++ SK         A   GS+ +   ED
Sbjct: 103 NIELKVEVESLKRELQEREQLLIKASKAVES----LAEAGGSEIQRVKED 148


>TRMA_PANTR (Q7YR32) Tripartite motif-containing protein 10 (RING
           finger protein 9) (B30-RING finger protein)
          Length = 481

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 155 VCRKSVKHLGVRSGIAHEAYTQWNLMLKKELVKVRRELEEKDELLMRDSKR 205
           VCR++ +H         +A   +   + K L ++R+E EE  E+  R++KR
Sbjct: 120 VCREAGEHATHTMRFLEDAAAPYREQIHKCLKRLRKEREETQEIQSRENKR 170


>RRPO_ROTS1 (P22678) RNA-directed RNA polymerase subunit VP1 (EC
           2.7.7.48) (Inner layer protein VP1) (Core protein VP1)
          Length = 1088

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 12/35 (34%), Positives = 24/35 (68%)

Query: 172 EAYTQWNLMLKKELVKVRRELEEKDELLMRDSKRA 206
           E Y ++ ++++ E+VK+  E  + D+ L+RDS+ A
Sbjct: 358 EMYREYTMLIRDEVVKMLEEPVKHDDHLLRDSELA 392


>RIR1_BUCAI (P57276) Ribonucleoside-diphosphate reductase alpha
           chain (EC 1.17.4.1) (Ribonucleotide reductase)
          Length = 761

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 35/128 (27%), Positives = 51/128 (39%), Gaps = 29/128 (22%)

Query: 79  TPTAQVKE-IITGCGDFLN---------VPLLGTRGGINYNPELAMRQFGFPMK-AKPIN 127
           TPT Q    ++  CGD LN         V  +  R GI  N    +R  G P++  +  +
Sbjct: 217 TPTRQFSSCVLIECGDSLNSINATTSSIVKYVSQRAGIGVNAG-QIRALGSPIRNGEAFH 275

Query: 128 LATSPEFFYYSNAPTGQREAFIGAWSKVCRKSVKHLGVRSGIAHEAYTQWNLMLKKELV- 186
               P + ++ +A                 KS    GVR G A   Y  W+L ++  LV 
Sbjct: 276 TGCIPFYKHFQSAV----------------KSCSQGGVRGGAATIFYPIWHLEVESLLVL 319

Query: 187 KVRRELEE 194
           K  R +EE
Sbjct: 320 KNNRGIEE 327


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.321    0.136    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,136,170
Number of Sequences: 164201
Number of extensions: 1310479
Number of successful extensions: 2957
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2952
Number of HSP's gapped (non-prelim): 8
length of query: 234
length of database: 59,974,054
effective HSP length: 107
effective length of query: 127
effective length of database: 42,404,547
effective search space: 5385377469
effective search space used: 5385377469
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)