BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146805.1 - phase: 0 /pseudo
(1445 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POL3_DROME (P04323) Retrovirus-related Pol polyprotein from tran... 185 7e-46
POL2_DROME (P20825) Retrovirus-related Pol polyprotein from tran... 184 2e-45
POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from tran... 172 6e-42
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 172 8e-42
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 169 5e-41
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 169 5e-41
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 167 2e-40
POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic pro... 159 4e-38
POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic pro... 159 5e-38
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 157 2e-37
POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic pro... 155 6e-37
POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic pro... 155 6e-37
POLY_DROME (P10401) Retrovirus-related Pol polyprotein from tran... 155 1e-36
POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic pro... 154 2e-36
RRPO_OENBE (P31843) RNA-directed DNA polymerase homolog (Reverse... 148 9e-35
POL_SOCMV (P15629) Enzymatic polyprotein [Contains: Aspartic pro... 141 1e-32
POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;... 134 2e-30
POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic prot... 133 3e-30
POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic prot... 125 8e-28
YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II 116 5e-25
>POL3_DROME (P04323) Retrovirus-related Pol polyprotein from
transposon 17.6 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1058
Score = 185 bits (470), Expect = 7e-46
Identities = 86/212 (40%), Positives = 143/212 (66%), Gaps = 5/212 (2%)
Query: 527 ELKKQLEDLLEKKFVRPSVSPWGAPVLLV-KKKDGS----MRLCIDYRQLNKVTIKNRYP 581
E++ Q++D+L + +R S SP+ +P+ +V KK+D S R+ IDYR+LN++T+ +R+P
Sbjct: 222 EVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHP 281
Query: 582 LPRIDDLMDQLVGARVFSKIDLRSGYHQIKVKDEDMQKTALRTRYGHYEYKVMPFGVTNA 641
+P +D+++ +L F+ IDL G+HQI++ E + KTA T++GHYEY MPFG+ NA
Sbjct: 282 IPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNA 341
Query: 642 PRVFMEYMNRIFHAFLDRFVVVFIDDILIYSKTEEEHAEHLKIVLQVLKEKKLYAKLSKC 701
P F MN I L++ +V++DDI+++S + +EH + L +V + L + L +L KC
Sbjct: 342 PATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKC 401
Query: 702 EFWLKEVSFLGHVISGDGIAVDPSKVEAVSQW 733
EF +E +FLGHV++ DGI +P K+EA+ ++
Sbjct: 402 EFLKQETTFLGHVLTPDGIKPNPEKIEAIQKY 433
>POL2_DROME (P20825) Retrovirus-related Pol polyprotein from
transposon 297 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1059
Score = 184 bits (466), Expect = 2e-45
Identities = 87/224 (38%), Positives = 143/224 (63%), Gaps = 5/224 (2%)
Query: 512 PVSMAPYRMSASELSELKKQLEDLLEKKFVRPSVSPWGAPVLLVKKKDGSM-----RLCI 566
P+ Y ++ + E++ Q++++L + +R S SP+ +P +V KK + R+ I
Sbjct: 206 PIYSKQYPLAQTHEIEVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVI 265
Query: 567 DYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQIKVKDEDMQKTALRTRY 626
DYR+LN++TI +RYP+P +D+++ +L + F+ IDL G+HQI++ +E + KTA T+
Sbjct: 266 DYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKS 325
Query: 627 GHYEYKVMPFGVTNAPRVFMEYMNRIFHAFLDRFVVVFIDDILIYSKTEEEHAEHLKIVL 686
GHYEY MPFG+ NAP F MN I L++ +V++DDI+I+S + EH +++V
Sbjct: 326 GHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVF 385
Query: 687 QVLKEKKLYAKLSKCEFWLKEVSFLGHVISGDGIAVDPSKVEAV 730
L + L +L KCEF KE +FLGH+++ DGI +P KV+A+
Sbjct: 386 TKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAI 429
>POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from
transposon opus [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1003
Score = 172 bits (436), Expect = 6e-42
Identities = 86/256 (33%), Positives = 149/256 (57%), Gaps = 6/256 (2%)
Query: 482 DFPEVYPDEIPDVPPEREVEFSINLVPGTKPVSMAPYRMSASELSELKKQLEDLLEKKFV 541
+FP ++ + + E V+ I P+ Y + E+++Q+++LL+ +
Sbjct: 94 EFPRIFEPPLSGMSVETAVKAEIR-TNTQDPIYAKSYPYPVNMRGEVERQIDELLQDGII 152
Query: 542 RPSVSPWGAPVLLVKKK-----DGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAR 596
RPS SP+ +P+ +V KK + R+ +D+++LN VTI + YP+P I+ + L A+
Sbjct: 153 RPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPDINATLASLGNAK 212
Query: 597 VFSKIDLRSGYHQIKVKDEDMQKTALRTRYGHYEYKVMPFGVTNAPRVFMEYMNRIFHAF 656
F+ +DL SG+HQI +K+ D+ KTA T G YE+ +PFG+ NAP +F ++ I
Sbjct: 213 YFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILREH 272
Query: 657 LDRFVVVFIDDILIYSKTEEEHAEHLKIVLQVLKEKKLYAKLSKCEFWLKEVSFLGHVIS 716
+ + V+IDDI+++S+ + H ++L++VL L + L L K F +V FLG++++
Sbjct: 273 IGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQVEFLGYIVT 332
Query: 717 GDGIAVDPSKVEAVSQ 732
DGI DP KV A+S+
Sbjct: 333 ADGIKADPKKVRAISE 348
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 172 bits (435), Expect = 8e-42
Identities = 93/274 (33%), Positives = 149/274 (53%)
Query: 496 PEREVEFSINLVPGTKPVSMAPYRMSASELSELKKQLEDLLEKKFVRPSVSPWGAPVLLV 555
P + +EF + L + + Y + ++ + ++ L+ +R S + PV+ V
Sbjct: 396 PIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFV 455
Query: 556 KKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQIKVKDE 615
KK+G++R+ +DY+ LNK N YPLP I+ L+ ++ G+ +F+K+DL+S YH I+V+
Sbjct: 456 PKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKG 515
Query: 616 DMQKTALRTRYGHYEYKVMPFGVTNAPRVFMEYMNRIFHAFLDRFVVVFIDDILIYSKTE 675
D K A R G +EY VMP+G++ AP F ++N I + VV ++DDILI+SK+E
Sbjct: 516 DEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSE 575
Query: 676 EEHAEHLKIVLQVLKEKKLYAKLSKCEFWLKEVSFLGHVISGDGIAVDPSKVEAVSQWGD 735
EH +H+K VLQ LK L +KCEF +V F+G+ IS G ++ V QW
Sbjct: 576 SEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQ 635
Query: 736 S*VRYRD*KLLGFSRLL*KVY*RVFQVSSSANTV 769
R + LG L K + Q++ N +
Sbjct: 636 PKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNL 669
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 169 bits (428), Expect = 5e-41
Identities = 92/274 (33%), Positives = 149/274 (53%)
Query: 496 PEREVEFSINLVPGTKPVSMAPYRMSASELSELKKQLEDLLEKKFVRPSVSPWGAPVLLV 555
P + +EF + L + + Y + ++ + ++ L+ +R S + PV+ V
Sbjct: 396 PIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFV 455
Query: 556 KKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQIKVKDE 615
KK+G++R+ +DY+ LNK N YPLP I+ L+ ++ G+ +F+K+DL+S YH I+V+
Sbjct: 456 PKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKG 515
Query: 616 DMQKTALRTRYGHYEYKVMPFGVTNAPRVFMEYMNRIFHAFLDRFVVVFIDDILIYSKTE 675
D K A R G +EY VMP+G++ AP F ++N I + VV ++D+ILI+SK+E
Sbjct: 516 DEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSE 575
Query: 676 EEHAEHLKIVLQVLKEKKLYAKLSKCEFWLKEVSFLGHVISGDGIAVDPSKVEAVSQWGD 735
EH +H+K VLQ LK L +KCEF +V F+G+ IS G ++ V QW
Sbjct: 576 SEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQ 635
Query: 736 S*VRYRD*KLLGFSRLL*KVY*RVFQVSSSANTV 769
R + LG L K + Q++ N +
Sbjct: 636 PKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNL 669
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 169 bits (428), Expect = 5e-41
Identities = 92/274 (33%), Positives = 149/274 (53%)
Query: 496 PEREVEFSINLVPGTKPVSMAPYRMSASELSELKKQLEDLLEKKFVRPSVSPWGAPVLLV 555
P + +EF + L + + Y + ++ + ++ L+ +R S + PV+ V
Sbjct: 396 PIKGLEFEVELTQENYRLPIRNYPLPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFV 455
Query: 556 KKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQIKVKDE 615
KK+G++R+ +DY+ LNK N YPLP I+ L+ ++ G+ +F+K+DL+S YH I+V+
Sbjct: 456 PKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKG 515
Query: 616 DMQKTALRTRYGHYEYKVMPFGVTNAPRVFMEYMNRIFHAFLDRFVVVFIDDILIYSKTE 675
D K A R G +EY VMP+G++ AP F ++N I + VV ++D+ILI+SK+E
Sbjct: 516 DEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKSE 575
Query: 676 EEHAEHLKIVLQVLKEKKLYAKLSKCEFWLKEVSFLGHVISGDGIAVDPSKVEAVSQWGD 735
EH +H+K VLQ LK L +KCEF +V F+G+ IS G ++ V QW
Sbjct: 576 SEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQ 635
Query: 736 S*VRYRD*KLLGFSRLL*KVY*RVFQVSSSANTV 769
R + LG L K + Q++ N +
Sbjct: 636 PKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNL 669
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 167 bits (423), Expect = 2e-40
Identities = 84/255 (32%), Positives = 144/255 (55%)
Query: 479 VVCDFPEVYPDEIPDVPPEREVEFSINLVPGTKPVSMAPYRMSASELSELKKQLEDLLEK 538
V+ F +V+ ++ E I L G +P+ P + + E++K ++ +L +
Sbjct: 909 VIEQFQDVFAISDDELGRNSGTECVIELKEGAEPIRQKPRPIPLALKPEIRKMIQKMLNQ 968
Query: 539 KFVRPSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVF 598
K +R S SPW +PV+LVKKKDGS+R+CIDYR++NKV N +PLP I+ + L G +++
Sbjct: 969 KVIRESKSPWSSPVVLVKKKDGSIRMCIDYRKVNKVVKNNAHPLPNIEATLQSLAGKKLY 1028
Query: 599 SKIDLRSGYHQIKVKDEDMQKTALRTRYGHYEYKVMPFGVTNAPRVFMEYMNRIFHAFLD 658
+ D+ +G+ QI + ++ + TA +E+ V+PFG+ +P +F M I L
Sbjct: 1029 TVFDMIAGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALFQGTMEEIIGDLLG 1088
Query: 659 RFVVVFIDDILIYSKTEEEHAEHLKIVLQVLKEKKLYAKLSKCEFWLKEVSFLGHVISGD 718
V++DD+LI SK E+H + +K L +++ + + SKC KEV +LGH ++ D
Sbjct: 1089 VCAFVYVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRASKCHIAKKEVEYLGHKVTLD 1148
Query: 719 GIAVDPSKVEAVSQW 733
G+ K + + Q+
Sbjct: 1149 GVETQEVKTDKMKQF 1163
>POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 159 bits (403), Expect = 4e-38
Identities = 108/382 (28%), Positives = 190/382 (49%), Gaps = 38/382 (9%)
Query: 367 MVVETPAKGSVTTSLVCLRCPLSMFGRDFEMDLVCLPLSGMDVILGMNWLEYKHVHINCF 426
++V+ S+T S VC L + G F++ V SG+D I+G N+ + I F
Sbjct: 70 IMVKIADGSSITISKVCKDIDLIIAGEIFKIPTVYQQESGIDFIIGNNFCQLYEPFIQ-F 128
Query: 427 SKSVYFSSAEE------------ECGAE-FLST--KQLKQMERDGILMFSLMASLSIENQ 471
+ V F+ + G E FL + K+ K + + + + + +E
Sbjct: 129 TDRVIFTKNKSYPVHITKLTRAVRVGIEGFLESMKKRSKTQQPEPVNISTNKIENPLEEI 188
Query: 472 AVID---------------KLQVVCDFPEVYPDEIPDVPPERE--VEFSINLVPGTKPVS 514
A++ ++Q + + E E P P + + ++ SI L +K +
Sbjct: 189 AILSEGRRLSEEKLFITQQRMQKIEELLEKVCSENPLDPNKTKQWMKASIKLSDPSKAIK 248
Query: 515 MAPYRMSASELSELKKQLEDLLEKKFVRPSVSPWGAPVLLV----KKKDGSMRLCIDYRQ 570
+ P + S + E KQ+++LL+ K ++PS SP AP LV +K+ G R+ ++Y+
Sbjct: 249 VKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKA 308
Query: 571 LNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQIKVKDEDMQKTALRTRYGHYE 630
+NK TI + Y LP D+L+ + G ++FS D +SG+ Q+ + E TA GHYE
Sbjct: 309 MNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYE 368
Query: 631 YKVMPFGVTNAPRVFMEYMNRIFHAFLDRFVVVFIDDILIYSKTEEEHAEHLKIVLQVLK 690
+ V+PFG+ AP +F +M+ F F +F V++DDIL++S EE+H H+ ++LQ
Sbjct: 369 WNVVPFGLKQAPSIFQRHMDEAFRVF-RKFCCVYVDDILVFSNNEEDHLLHVAMILQKCN 427
Query: 691 EKKLYAKLSKCEFWLKEVSFLG 712
+ + K + + K+++FLG
Sbjct: 428 QHGIILSKKKAQLFKKKINFLG 449
>POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 159 bits (402), Expect = 5e-38
Identities = 107/382 (28%), Positives = 189/382 (49%), Gaps = 38/382 (9%)
Query: 367 MVVETPAKGSVTTSLVCLRCPLSMFGRDFEMDLVCLPLSGMDVILGMNWLEYKHVHINCF 426
++V+ S+T S VC L + G F + V SG+D I+G N+ + I F
Sbjct: 70 IMVKIADGSSITISKVCKDIDLIIAGEIFRIPTVYQQESGIDFIIGNNFCQLYEPFIQ-F 128
Query: 427 SKSVYFSSAEE------------ECGAE-FLST--KQLKQMERDGILMFSLMASLSIENQ 471
+ V F+ + G E FL + K+ K + + + + + +E
Sbjct: 129 TDRVIFTKNKSYPVHIAKLTRAVRVGTEGFLESMKKRSKTQQPEPVNISTNKIENPLEEI 188
Query: 472 AVID---------------KLQVVCDFPEVYPDEIPDVPPERE--VEFSINLVPGTKPVS 514
A++ ++Q + + E E P P + + ++ SI L +K +
Sbjct: 189 AILSEGRRLSEEKLFITQQRMQKIEELLEKVCSENPLDPNKTKQWMKASIKLSDPSKAIK 248
Query: 515 MAPYRMSASELSELKKQLEDLLEKKFVRPSVSPWGAPVLLV----KKKDGSMRLCIDYRQ 570
+ P + S + E KQ+++LL+ K ++PS SP AP LV +K+ G R+ ++Y+
Sbjct: 249 VKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKA 308
Query: 571 LNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQIKVKDEDMQKTALRTRYGHYE 630
+NK T+ + Y LP D+L+ + G ++FS D +SG+ Q+ + E TA GHYE
Sbjct: 309 MNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYE 368
Query: 631 YKVMPFGVTNAPRVFMEYMNRIFHAFLDRFVVVFIDDILIYSKTEEEHAEHLKIVLQVLK 690
+ V+PFG+ AP +F +M+ F F +F V++DDIL++S EE+H H+ ++LQ
Sbjct: 369 WNVVPFGLKQAPSIFQRHMDEAFRVF-RKFCCVYVDDILVFSNNEEDHLLHVAMILQKCN 427
Query: 691 EKKLYAKLSKCEFWLKEVSFLG 712
+ + K + + K+++FLG
Sbjct: 428 QHGIILSKKKAQLFKKKINFLG 449
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 157 bits (398), Expect = 2e-37
Identities = 92/292 (31%), Positives = 154/292 (52%), Gaps = 22/292 (7%)
Query: 462 LMASLSIENQAVIDKLQVVCDFPEVYPDEIPDVPPEREVEFSINLVPGT----------- 510
+ A+ N+ V+ +L+ +FPE++ ++ ++ E F++ P T
Sbjct: 252 VQANSEHRNKTVLSQLKK--NFPELFKSQLENICSEYIDIFALESEPITVNNLYKQQLRL 309
Query: 511 ---KPVSMAPYRMSASELSELKKQLEDLLEKKFVRPSVSPWGAPVLLVKKKDG------S 561
+PV YR S++ E++ Q++ L++ K V PSVS + +P+LLV KK
Sbjct: 310 KDDEPVYTKNYRSPHSQVEEIQAQVQKLIKDKIVEPSVSQYNSPLLLVPKKSSPNSDKKK 369
Query: 562 MRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQIKVKDEDMQKTA 621
RL IDYRQ+NK + +++PLPRIDD++DQL A+ FS +DL SG+HQI++ + T+
Sbjct: 370 WRLVIDYRQINKKLLADKFPLPRIDDILDQLGRAKYFSCLDLMSGFHQIELDEGSRDITS 429
Query: 622 LRTRYGHYEYKVMPFGVTNAPRVFMEYMNRIFHAFLDRFVVVFIDDILIYSKTEEEHAEH 681
T G Y + +PFG+ AP F M F +++DD+++ +E+ ++
Sbjct: 430 FSTSNGSYRFTRLPFGLKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKN 489
Query: 682 LKIVLQVLKEKKLYAKLSKCEFWLKEVSFLGHVISGDGIAVDPSKVEAVSQW 733
L V +E L KC F++ EV+FLGH + GI D K + + +
Sbjct: 490 LTEVFGKCREYNLKLHPEKCSFFMHEVTFLGHKCTDKGILPDDKKYDVIQNY 541
>POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 155 bits (393), Expect = 6e-37
Identities = 107/382 (28%), Positives = 191/382 (49%), Gaps = 38/382 (9%)
Query: 367 MVVETPAKGSVTTSLVCLRCPLSMFGRDFEMDLVCLPLSGMDVILGMNWLEYKH------ 420
++V+ S+T S VC L + F++ V SG+D I+G N+ +
Sbjct: 70 IMVKIADGSSITISKVCKDIDLIIAREIFKIPTVYQQESGIDFIIGNNFCQLYEPFIQFT 129
Query: 421 ------------VHINCFSKSV------YFSSAEEECGAEF-----LSTKQLKQMERDGI 457
VHI +++V + S ++ + +ST +++ ++ I
Sbjct: 130 DRVIFTKNKSYPVHIAKLTRAVRVGTEGFLESMKKRSKTQQPEPVNISTNKIENPLKE-I 188
Query: 458 LMFSLMASLSIENQAVID-KLQVVCDFPEVYPDEIPDVPPERE--VEFSINLVPGTKPVS 514
+ S LS E + ++Q + + E E P P + + ++ SI L +K +
Sbjct: 189 AILSEGRRLSEEKLFITQQRMQKIEELLEKVCSENPLDPNKTKQWMKASIKLSDPSKAIK 248
Query: 515 MAPYRMSASELSELKKQLEDLLEKKFVRPSVSPWGAPVLLV----KKKDGSMRLCIDYRQ 570
+ P + S + E KQ+++LL+ K ++PS SP AP LV +K+ G R+ ++Y+
Sbjct: 249 VKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKA 308
Query: 571 LNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQIKVKDEDMQKTALRTRYGHYE 630
+NK TI + Y LP D+L+ + G ++FS D +SG+ Q+ + E TA GHYE
Sbjct: 309 MNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYE 368
Query: 631 YKVMPFGVTNAPRVFMEYMNRIFHAFLDRFVVVFIDDILIYSKTEEEHAEHLKIVLQVLK 690
+ V+PFG+ AP +F +M+ F F +F V++DDIL++S EE+H H+ ++LQ
Sbjct: 369 WNVVPFGLKQAPSIFQRHMDEAFRVF-RKFCCVYVDDILVFSNNEEDHLLHVAMILQKCN 427
Query: 691 EKKLYAKLSKCEFWLKEVSFLG 712
+ + K + + K+++FLG
Sbjct: 428 QHGIILSKKKAQLFKKKINFLG 449
>POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 674
Score = 155 bits (393), Expect = 6e-37
Identities = 104/375 (27%), Positives = 188/375 (49%), Gaps = 31/375 (8%)
Query: 367 MVVETPAKGSVTTSLVCLRCPLSMFGRDFEMDLVCLPLSGMDVILGMNWLEYKHVHINCF 426
++V+ S+T + VC L + G F + V SG+D I+G N+ + I F
Sbjct: 72 IMVKIADGSSITINKVCRDIDLIIAGEIFHIPTVYQQESGIDFIIGNNFCQLYEPFIQ-F 130
Query: 427 SKSVYFSSAEE------------ECGAE-FLST--KQLKQMERDGILMFSLMASLSIENQ 471
+ V F+ G E FL + K+ K + + + + + ++ E +
Sbjct: 131 TDRVIFTKDRTYPVHIAKLTRAVRVGTEGFLESMKKRSKTQQPEPVNISTNKIAILSEGR 190
Query: 472 AVID--------KLQVVCDFPEVYPDEIPDVPPERE--VEFSINLVPGTKPVSMAPYRMS 521
+ + ++Q + + E E P P + + ++ SI L +K + + P + S
Sbjct: 191 RLSEEKLFITQQRMQKIEELLEKVCSENPLDPNKTKQWMKASIKLSDPSKAIKVKPMKYS 250
Query: 522 ASELSELKKQLEDLLEKKFVRPSVSPWGAPVLLV----KKKDGSMRLCIDYRQLNKVTIK 577
+ E KQ+++LL+ K ++PS SP AP LV +K+ G R+ ++Y+ +NK T+
Sbjct: 251 PMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVG 310
Query: 578 NRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQIKVKDEDMQKTALRTRYGHYEYKVMPFG 637
+ Y P D+L+ + G ++FS D +SG+ Q+ + E TA GHYE+ V+PFG
Sbjct: 311 DAYNPPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFG 370
Query: 638 VTNAPRVFMEYMNRIFHAFLDRFVVVFIDDILIYSKTEEEHAEHLKIVLQVLKEKKLYAK 697
+ AP +F +M+ F F +F V++DDIL++S EE+H H+ ++LQ + +
Sbjct: 371 LKQAPSIFQRHMDEAFRVF-RKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILS 429
Query: 698 LSKCEFWLKEVSFLG 712
K + + K+++FLG
Sbjct: 430 KKKAQLFKKKINFLG 444
>POLY_DROME (P10401) Retrovirus-related Pol polyprotein from
transposon gypsy [Contains: Reverse transcriptase (EC
2.7.7.49); Endonuclease]
Length = 1035
Score = 155 bits (391), Expect = 1e-36
Identities = 82/250 (32%), Positives = 141/250 (55%), Gaps = 13/250 (5%)
Query: 517 PYRMSASELSELKKQLEDLLEKKFVRPSVSPWGAPVLLVKKK------DGSMRLCIDYRQ 570
P M S+ + +++ LL+ +RPS SP+ +P +V KK + + RL ID+R+
Sbjct: 188 PTLMGVSDF--VNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFGNPNKRLVIDFRK 245
Query: 571 LNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQIKVKDEDMQKTALRTRYGHYE 630
LN+ TI +RYP+P I ++ L A+ F+ +DL+SGYHQI + + D +KT+ G YE
Sbjct: 246 LNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYE 305
Query: 631 YKVMPFGVTNAPRVFMEYMNRIFHAFLDRFVVVFIDDILIYSKTEEEHAEHLKIVLQVLK 690
+ +PFG+ NA +F ++ + + + V++DD++I+S+ E +H H+ VL+ L
Sbjct: 306 FCRLPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLI 365
Query: 691 EKKLYAKLSKCEFWLKEVSFLGHVISGDGIAVDPSKVEAVSQWGDS*VRYRD*KLLGFSR 750
+ + K F+ + V +LG ++S DG DP KV+A+ ++ + Y+ LG +
Sbjct: 366 DANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLAS 425
Query: 751 LL*KVY*RVF 760
Y RVF
Sbjct: 426 -----YYRVF 430
>POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 680
Score = 154 bits (389), Expect = 2e-36
Identities = 105/382 (27%), Positives = 188/382 (48%), Gaps = 38/382 (9%)
Query: 367 MVVETPAKGSVTTSLVCLRCPLSMFGRDFEMDLVCLPLSGMDVILGMNWLEYKHVHINCF 426
++V+ S+T S VC L + G F++ V SG+D I+G N+ + I F
Sbjct: 71 IMVKIADGSSITISKVCKDIDLIIVGVIFKIPTVYQQESGIDFIIGNNFCQLYEPFIQ-F 129
Query: 427 SKSVYFSSAEE------------ECGAE-FLST--KQLKQMERDGILMFSLMASLSIENQ 471
+ V F+ + G E FL + K+ K + + + + + +E
Sbjct: 130 TDRVIFTKNKSYPVHIAKLTRAVRVGTEGFLESMKKRSKTQQPEPVNISTNKIENPLEEI 189
Query: 472 AVID---------------KLQVVCDFPEVYPDEIPDVPPERE--VEFSINLVPGTKPVS 514
A++ ++Q + E E P P + + ++ SI L +K +
Sbjct: 190 AILSEGRRLSEEKLFITQQRMQKTEELLEKVCSENPLDPNKTKQWMKASIKLSDPSKAIK 249
Query: 515 MAPYRMSASELSELKKQLEDLLEKKFVRPSVSPWGAPVLLVKKKD----GSMRLCIDYRQ 570
+ P + S + E KQ+++LL+ K ++PS SP AP LV + G+ R+ ++Y+
Sbjct: 250 VKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAENGRGNKRMVVNYKA 309
Query: 571 LNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQIKVKDEDMQKTALRTRYGHYE 630
+NK T+ + Y LP D+L+ + G ++FS D +SG+ Q+ + E TA GHYE
Sbjct: 310 MNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYE 369
Query: 631 YKVMPFGVTNAPRVFMEYMNRIFHAFLDRFVVVFIDDILIYSKTEEEHAEHLKIVLQVLK 690
+ V+PFG+ AP +F +M+ F F +F V++DDI+++S EE+H H+ ++LQ
Sbjct: 370 WNVVPFGLKQAPSIFQRHMDEAFRVF-RKFCCVYVDDIVVFSNNEEDHLLHVAMILQKCN 428
Query: 691 EKKLYAKLSKCEFWLKEVSFLG 712
+ + K + + K+++FLG
Sbjct: 429 QHGIILSKKKAQLFKKKINFLG 450
>RRPO_OENBE (P31843) RNA-directed DNA polymerase homolog (Reverse
transcriptase homolog)
Length = 142
Score = 148 bits (374), Expect = 9e-35
Identities = 68/128 (53%), Positives = 94/128 (73%), Gaps = 3/128 (2%)
Query: 561 SMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQIKVKDEDMQKT 620
S+R+CIDYR L KVTIKN+YP+PR+DDL D+L A F+K+DLRSGY Q+++ D KT
Sbjct: 5 SLRMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKT 64
Query: 621 ALRTRYGHYEYKVMPFGVTNAPRVFMEYMNRIFHAFLDRFVVVFIDDIL---IYSKTEEE 677
TRYG +E++VMPFG+TNA F MN + + +LD FVVV++DD++ IYS + E
Sbjct: 65 TCVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHE 124
Query: 678 HAEHLKIV 685
H +HL++V
Sbjct: 125 HIKHLRVV 132
>POL_SOCMV (P15629) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 692
Score = 141 bits (355), Expect = 1e-32
Identities = 101/364 (27%), Positives = 191/364 (51%), Gaps = 27/364 (7%)
Query: 388 LSMFGRDFEMDLVCLPLSGMDVILGMNWLEYKHVHINCFSK-SVYFSSAEEECGAEFLST 446
L + ++F + ++ L SG+D+I+G N+L+ I + + + ++ +ST
Sbjct: 80 LKIENKEFLIPIIYLHDSGLDLIIGNNFLKLYQPFIQRLETIELRWKNLNNPKESQMIST 139
Query: 447 KQLKQMERDGILMFSL-MASLSIEN----QAVIDKLQVVCDFPEVYPDEIPDVPPEREVE 501
K L + E +L S + +E + + ++L+ VC + + + +
Sbjct: 140 KILTKNE---VLKLSFEKIHICLEKYLFFKTIEEQLEEVCS-----EHPLDETKNKNGLL 191
Query: 502 FSINLVPGTKPVSMA---PYRMSASELSELKKQLEDLLEKKFVRPSVSPWGAPVLLVKK- 557
I L + +++ PY + ++ E K++ EDLL+K +R S SP AP V+
Sbjct: 192 IEIRLKDPLQEINVTNRIPYTIR--DVQEFKEECEDLLKKGLIRESQSPHSAPAFYVENH 249
Query: 558 ---KDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQIKVKD 614
K G R+ I+Y+++N+ TI + Y LPR D +++++ G+ FS +D +SGY+Q+++ +
Sbjct: 250 NEIKRGKRRMVINYKKMNEATIGDSYKLPRKDFILEKIKGSLWFSSLDAKSGYYQLRLHE 309
Query: 615 EDMQKTALR-TRYGHYEYKVMPFGVTNAPRVFMEYMNRIFHAFLDRFVVVFIDDILIYSK 673
TA HYE+ V+ FG+ AP ++ +M++ L+ + +IDDILI++K
Sbjct: 310 NTKPLTAFSCPPQKHYEWNVLSFGLKQAPSIYQRFMDQSLKG-LEHICLAYIDDILIFTK 368
Query: 674 -TEEEHAEHLKIVLQVLKEKKLYAKLSKCEFWLKEVSFLGHVISGDG-IAVDPSKVEAVS 731
++E+H ++IVLQ +KEK + K + +E+ +LG I G+G I + P E +
Sbjct: 369 GSKEQHVNDVRIVLQRIKEKGIIISKKKSKLIQQEIEYLGLKIQGNGEIDLSPHTQEKIL 428
Query: 732 QWGD 735
Q+ D
Sbjct: 429 QFPD 432
>POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;
Protease (EC 3.4.23.-); Reverse transcriptase (EC
2.7.7.49); Ribonuclease H (EC 3.1.26.4)]
Length = 1886
Score = 134 bits (337), Expect = 2e-30
Identities = 73/249 (29%), Positives = 138/249 (55%), Gaps = 13/249 (5%)
Query: 499 EVEFSINLV-PGTKPVSMAPYRMSASELSELKKQLEDLLEKKFVRPSVSPWGAPVLLV-- 555
+++ +N++ P K + ++ + + +Q+ LL+ K +RPS S + +V
Sbjct: 1388 KIKCKLNIINPDIKIMGRPIKHVTPGDEEAMTRQINLLLQMKVIRPSESKHRSTAFIVRS 1447
Query: 556 ---------KKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSG 606
K+K G R+ +Y+ LN+ T ++Y LP I+ ++ ++ ++++SK DL+SG
Sbjct: 1448 GTEIDPITGKEKKGKERMVFNYKLLNENTESDQYSLPGINTIISKVGRSKIYSKFDLKSG 1507
Query: 607 YHQIKVKDEDMQKTALRTRYGHYEYKVMPFGVTNAPRVFMEYMNRIFHAFLDRFVVVFID 666
+ Q+ +++E + TA YE+ VMPFG+ NAP +F M+ +F ++F+ V+ID
Sbjct: 1508 FWQVAMEEESVPWTAFLAGNKLYEWLVMPFGLKNAPAIFQRKMDNVFKG-TEKFIAVYID 1566
Query: 667 DILIYSKTEEEHAEHLKIVLQVLKEKKLYAKLSKCEFWLKEVSFLGHVISGDGIAVDPSK 726
DIL++S+T E+H++HL +LQ+ KE L +K + E+ FLG + I + P
Sbjct: 1567 DILVFSETAEQHSQHLYTMLQLCKENGLILSPTKMKIGTPEIDFLGASLGCTKIKLQPHI 1626
Query: 727 VEAVSQWGD 735
+ + + D
Sbjct: 1627 ISKICDFSD 1635
>POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 666
Score = 133 bits (335), Expect = 3e-30
Identities = 92/399 (23%), Positives = 188/399 (47%), Gaps = 22/399 (5%)
Query: 333 YSFSCYYYTSATHCFIAFDCVSALGLDLSDMS*EMVVETPAKGSVTTSLVCLRCPLSMFG 392
++ CY T A+ C + + + S ++ V+ + + + VC + G
Sbjct: 47 FNIHCYVDTGASLCIASRYIIPEELWENSPK--DIQVKIANQELIKITKVCKNLKVKFAG 104
Query: 393 RDFEMDLVCLPLSGMDVILGMNWLEYKHVHINCFSKSVYF-----------SSAEEECGA 441
+ FE+ V +G+D ++G N+ + I + + + A
Sbjct: 105 KSFEIPTVYQQETGIDFLIGNNFCRLYNPFIQWEDRIAFHLKNEMVLIKKVTKAFSVSNP 164
Query: 442 EFLST--KQLKQMERDGILMFSLMASLSIENQAVIDKLQVVCDFPEVYPDEIPDVPPERE 499
FL K K + G + + + + +K Q + + E P P + +
Sbjct: 165 SFLENMKKDSKTEQIPGTNISKNIINPEERYFLITEKYQKIEQLLDKVCSENPIDPIKSK 224
Query: 500 --VEFSINLVPGTKPVSMAPYRMSASELSELKKQLEDLLEKKFVRPSVSPWGAPVLLVK- 556
++ SI L+ K + + P S + KQ+++LL+ + PS S +P LV+
Sbjct: 225 QWMKASIKLIDPLKVIRVKPMSYSPQDREGFAKQIKELLDLGLIIPSKSQHMSPAFLVEN 284
Query: 557 ---KKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGARVFSKIDLRSGYHQIKVK 613
++ G R+ ++Y+ +N+ TI + + LP + +L+ L G +FS D +SG+ Q+ +
Sbjct: 285 EAERRRGKKRMVVNYKAINQATIGDSHNLPNMQELLTLLRGKSIFSSFDCKSGFWQVVLD 344
Query: 614 DEDMQKTALRTRYGHYEYKVMPFGVTNAPRVFMEYMNRIFHAFLDRFVVVFIDDILIYSK 673
+E + TA GH+++KV+PFG+ AP +F +M + D+F +V++DDI+++S
Sbjct: 345 EESQKLTAFTCPQGHFQWKVVPFGLKQAPSIFQRHMQTALNG-ADKFCMVYVDDIIVFSN 403
Query: 674 TEEEHAEHLKIVLQVLKEKKLYAKLSKCEFWLKEVSFLG 712
+E +H H+ VL+++++ + K + ++++FLG
Sbjct: 404 SELDHYNHVYAVLKIVEKYGIILSKKKANLFKEKINFLG 442
>POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 659
Score = 125 bits (314), Expect = 8e-28
Identities = 92/361 (25%), Positives = 177/361 (48%), Gaps = 31/361 (8%)
Query: 382 VCLRCPLSMFGRDFEMDLVCLPLSGMDVILGMNW-------LEYK---HVHINCFSKSVY 431
VC + P+ + G F + + SG+D++LG N+ ++Y + H+N S +
Sbjct: 74 VCSKLPIRLGGERFLIPTLFQQESGIDLLLGNNFCQLYSPFIQYTDRIYFHLNKQSVIIG 133
Query: 432 FSSAEEECGAE-FL-STKQLKQMERDGILMFSLMASLSIEN----------QAVIDKLQV 479
+ + G + FL S K+ ++ R + + L +E + I K
Sbjct: 134 KITKAYQYGVKGFLESMKKKSKVNRPEPINITSNQHLFLEEGGNHVDEMLYEIQISKFSA 193
Query: 480 VCDFPEVYPDEIPDVPPEREVEF---SINLVPGTKPVSMAPYRMSASELSELKKQLEDLL 536
+ + E E P + PE+ ++ +I L+ V + P S S+ E +Q+++LL
Sbjct: 194 IEEMLERVSSENP-IDPEKSKQWMTATIELIDPKTVVKVKPMSYSPSDREEFDRQIKELL 252
Query: 537 EKKFVRPSVSPWGAPVLLVK----KKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQL 592
E K ++PS S +P LV+ ++ G R+ ++Y+ +NK T + + LP D+L+ +
Sbjct: 253 ELKVIKPSKSTHMSPAFLVENEAERRRGKKRMVVNYKAMNKATKGDAHNLPNKDELLTLV 312
Query: 593 VGARVFSKIDLRSGYHQIKVKDEDMQKTALRTRYGHYEYKVMPFGVTNAPRVFMEYMNRI 652
G +++S D +SG Q+ + E TA GHY++ V+PFG+ AP +F +
Sbjct: 313 RGKKIYSSFDCKSGLWQVLLDKESQLLTAFTCPQGHYQWNVVPFGLKQAPSIFPKTYANS 372
Query: 653 FHAFLDRFVVVFIDDILIYSKT-EEEHAEHLKIVLQVLKEKKLYAKLSKCEFWLKEVSFL 711
++ V++DDIL++S T +EH H+ +L+ ++ + K + + ++++FL
Sbjct: 373 HSNQYSKYCCVYVDDILVFSNTGRKEHYIHVLNILRRCEKLGIILSKKKAQLFKEKINFL 432
Query: 712 G 712
G
Sbjct: 433 G 433
>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II
Length = 1268
Score = 116 bits (290), Expect = 5e-25
Identities = 81/254 (31%), Positives = 129/254 (49%), Gaps = 13/254 (5%)
Query: 482 DFPEVYPDEIPDVPPER-EVEFSINLVPGTKPVSMAPYRMSASELSELKKQLEDLLEKKF 540
DFPEV+ D + E+ E N VP K PY L ++ +L L E
Sbjct: 413 DFPEVFKDGLGLCTKEKAEFRTEENAVPVFKRARPVPY----GSLEAVETELNRLQEMGV 468
Query: 541 VRP-SVSPWGAPVLLVKKKD-GSMRLCIDYR--QLNKVTIKNRYPLPRIDDLMDQLVGAR 596
+ P + + W AP++++KKK G +R+C D++ LN +PLP +D+ +L G
Sbjct: 469 IVPITYAKWAAPIVVIKKKGTGKIRVCADFKCSGLNAALKDEFHPLPTSEDIFSRLKGT- 527
Query: 597 VFSKIDLRSGYHQIKVKDEDMQKTALRTRYGHYEYKVMPFGVTNAPRVFMEYMNRIFHAF 656
V+S+IDL+ Y Q+++ +E + + T G ++Y M FG+ AP F + M+++
Sbjct: 528 VYSQIDLKDAYLQVELDEEAQKLAVINTHRGIFKYLRMTFGLKPAPASFQKIMDKMVSGL 587
Query: 657 LDRFVVVFIDDILIYSKTEEEHAEHLKIVLQVLKEKKLYAKLSKCEFWLKEVSFLGHVIS 716
V V+ DDI+I + + EEH + L+ + + KE KC F K+V+FLG V
Sbjct: 588 TG--VAVYWDDIIISASSIEEHEKILRELFERFKEYGFRVSAEKCAFAQKQVTFLGFV-D 644
Query: 717 GDGIAVDPSKVEAV 730
G D K EA+
Sbjct: 645 EHGRRPDSKKTEAI 658
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.360 0.161 0.597
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,141,551
Number of Sequences: 164201
Number of extensions: 5151105
Number of successful extensions: 22396
Number of sequences better than 10.0: 125
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 22115
Number of HSP's gapped (non-prelim): 174
length of query: 1445
length of database: 59,974,054
effective HSP length: 123
effective length of query: 1322
effective length of database: 39,777,331
effective search space: 52585631582
effective search space used: 52585631582
T: 11
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 72 (32.3 bits)
Medicago: description of AC146805.1