BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146794.13 + phase: 0 /pseudo
(818 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 68 1e-10
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 66 3e-10
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 66 3e-10
POL3_DROME (P04323) Retrovirus-related Pol polyprotein from tran... 62 8e-09
POL2_DROME (P20825) Retrovirus-related Pol polyprotein from tran... 60 2e-08
POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;... 52 5e-06
POL_RTBVP (P27502) Polyprotein (P194 protein) [Contains: Coat pr... 51 1e-05
POLY_DROME (P10401) Retrovirus-related Pol polyprotein from tran... 50 2e-05
POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from tran... 49 5e-05
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 47 2e-04
POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic pro... 45 6e-04
POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic pro... 45 6e-04
POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic pro... 45 6e-04
POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic pro... 45 6e-04
POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic pro... 44 0.001
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 44 0.001
POL_SOCMV (P15629) Enzymatic polyprotein [Contains: Aspartic pro... 44 0.002
RRPO_OENBE (P31843) RNA-directed DNA polymerase homolog (Reverse... 44 0.002
POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic prot... 42 0.007
YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II 39 0.042
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 67.8 bits (164), Expect = 1e-10
Identities = 36/100 (36%), Positives = 60/100 (60%), Gaps = 3/100 (3%)
Query: 19 FRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEFW 78
F+ ++N I + VV ++DDILI+S+SE EH +H+K +LQ LK + +KCEF
Sbjct: 545 FQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFH 604
Query: 79 LSEVSFLGHIISDSGIVVTHQ---KLMQ*HNGRLRSQLQR 115
S+V F+G+ IS+ G + K++Q + R +L++
Sbjct: 605 QSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQ 644
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 66.2 bits (160), Expect = 3e-10
Identities = 35/100 (35%), Positives = 60/100 (60%), Gaps = 3/100 (3%)
Query: 19 FRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEFW 78
F+ ++N I + VV ++D+ILI+S+SE EH +H+K +LQ LK + +KCEF
Sbjct: 545 FQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFH 604
Query: 79 LSEVSFLGHIISDSGIVVTHQ---KLMQ*HNGRLRSQLQR 115
S+V F+G+ IS+ G + K++Q + R +L++
Sbjct: 605 QSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQ 644
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 66.2 bits (160), Expect = 3e-10
Identities = 35/100 (35%), Positives = 60/100 (60%), Gaps = 3/100 (3%)
Query: 19 FRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEFW 78
F+ ++N I + VV ++D+ILI+S+SE EH +H+K +LQ LK + +KCEF
Sbjct: 545 FQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFH 604
Query: 79 LSEVSFLGHIISDSGIVVTHQ---KLMQ*HNGRLRSQLQR 115
S+V F+G+ IS+ G + K++Q + R +L++
Sbjct: 605 QSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQ 644
>POL3_DROME (P04323) Retrovirus-related Pol polyprotein from
transposon 17.6 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1058
Score = 61.6 bits (148), Expect = 8e-09
Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 20 RCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEFWL 79
RC MN I L+ +V++DDI+++S S +EH + L ++ + L + + +L KCEF
Sbjct: 347 RC-MNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLK 405
Query: 80 SEVSFLGHIISDSGIVVTHQKL 101
E +FLGH+++ GI +K+
Sbjct: 406 QETTFLGHVLTPDGIKPNPEKI 427
>POL2_DROME (P20825) Retrovirus-related Pol polyprotein from
transposon 297 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1059
Score = 60.1 bits (144), Expect = 2e-08
Identities = 30/83 (36%), Positives = 47/83 (56%)
Query: 12 LRIFSDAFRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAK 71
LR F+ MN I L+ +V++DDI+I+S S EH ++++ L + + +
Sbjct: 337 LRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQ 396
Query: 72 LSKCEFWLSEVSFLGHIISDSGI 94
L KCEF E +FLGHI++ GI
Sbjct: 397 LDKCEFLKKEANFLGHIVTPDGI 419
>POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;
Protease (EC 3.4.23.-); Reverse transcriptase (EC
2.7.7.49); Ribonuclease H (EC 3.1.26.4)]
Length = 1886
Score = 52.4 bits (124), Expect = 5e-06
Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 19 FRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEFW 78
F+ M+ +F + F+ V+IDDIL++S + E+H++HL MLQ+ KE + +K +
Sbjct: 1546 FQRKMDNVFKG-TEKFIAVYIDDILVFSETAEQHSQHLYTMLQLCKENGLILSPTKMKIG 1604
Query: 79 LSEVSFLG 86
E+ FLG
Sbjct: 1605 TPEIDFLG 1612
>POL_RTBVP (P27502) Polyprotein (P194 protein) [Contains: Coat
protein; Protease (EC 3.4.23.-); Reverse transcriptase
(EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)]
Length = 1675
Score = 50.8 bits (120), Expect = 1e-05
Identities = 30/77 (38%), Positives = 43/77 (54%), Gaps = 2/77 (2%)
Query: 18 AFRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEF 77
AF+ +M + F F +++IDDILI S +E+EH EHLKI +KE K +
Sbjct: 1321 AFQRFMQESFGDLK--FALLYIDDILIASNNEKEHIEHLKIFFNRVKEVGCVLSKKKSKM 1378
Query: 78 WLSEVSFLGHIISDSGI 94
+L EV +LG I + I
Sbjct: 1379 FLKEVEYLGVEIKEGKI 1395
>POLY_DROME (P10401) Retrovirus-related Pol polyprotein from
transposon gypsy [Contains: Reverse transcriptase (EC
2.7.7.49); Endonuclease]
Length = 1035
Score = 50.4 bits (119), Expect = 2e-05
Identities = 23/82 (28%), Positives = 42/82 (51%)
Query: 12 LRIFSDAFRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAK 71
LR S F+ ++ + + V++DD++I+S +E +H H+ +L+ L + M
Sbjct: 313 LRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVS 372
Query: 72 LSKCEFWLSEVSFLGHIISDSG 93
K F+ V +LG I+S G
Sbjct: 373 QEKTRFFKESVEYLGFIVSKDG 394
>POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from
transposon opus [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1003
Score = 48.9 bits (115), Expect = 5e-05
Identities = 23/83 (27%), Positives = 47/83 (55%)
Query: 19 FRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEFW 78
F+ ++ I ++ V+IDDI+++S + H ++L+++L L + + L K F
Sbjct: 261 FQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFL 320
Query: 79 LSEVSFLGHIISDSGIVVTHQKL 101
++V FLG+I++ GI +K+
Sbjct: 321 DTQVEFLGYIVTADGIKADPKKV 343
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 47.0 bits (110), Expect = 2e-04
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 19 FRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEFW 78
F+ M +I L V++DD+LI S+ E+H + +K L +++ M + SKC
Sbjct: 1075 FQGTMEEIIGDLLGVCAFVYVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRASKCHIA 1134
Query: 79 LSEVSFLGHIISDSGI 94
EV +LGH ++ G+
Sbjct: 1135 KKEVEYLGHKVTLDGV 1150
>POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 45.4 bits (106), Expect = 6e-04
Identities = 20/68 (29%), Positives = 41/68 (59%), Gaps = 1/68 (1%)
Query: 19 FRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEFW 78
F+ +M++ F + F V++DDIL++S +EE+H H+ ++LQ + + K + +
Sbjct: 383 FQRHMDEAFRVFRK-FCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLF 441
Query: 79 LSEVSFLG 86
+++FLG
Sbjct: 442 KKKINFLG 449
>POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 45.4 bits (106), Expect = 6e-04
Identities = 20/68 (29%), Positives = 41/68 (59%), Gaps = 1/68 (1%)
Query: 19 FRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEFW 78
F+ +M++ F + F V++DDIL++S +EE+H H+ ++LQ + + K + +
Sbjct: 383 FQRHMDEAFRVFRK-FCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLF 441
Query: 79 LSEVSFLG 86
+++FLG
Sbjct: 442 KKKINFLG 449
>POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 674
Score = 45.4 bits (106), Expect = 6e-04
Identities = 20/68 (29%), Positives = 41/68 (59%), Gaps = 1/68 (1%)
Query: 19 FRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEFW 78
F+ +M++ F + F V++DDIL++S +EE+H H+ ++LQ + + K + +
Sbjct: 378 FQRHMDEAFRVFRK-FCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLF 436
Query: 79 LSEVSFLG 86
+++FLG
Sbjct: 437 KKKINFLG 444
>POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 45.4 bits (106), Expect = 6e-04
Identities = 20/68 (29%), Positives = 41/68 (59%), Gaps = 1/68 (1%)
Query: 19 FRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEFW 78
F+ +M++ F + F V++DDIL++S +EE+H H+ ++LQ + + K + +
Sbjct: 383 FQRHMDEAFRVFRK-FCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLF 441
Query: 79 LSEVSFLG 86
+++FLG
Sbjct: 442 KKKINFLG 449
>POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 680
Score = 44.3 bits (103), Expect = 0.001
Identities = 19/68 (27%), Positives = 41/68 (59%), Gaps = 1/68 (1%)
Query: 19 FRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEFW 78
F+ +M++ F + F V++DDI+++S +EE+H H+ ++LQ + + K + +
Sbjct: 384 FQRHMDEAFRVFRK-FCCVYVDDIVVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLF 442
Query: 79 LSEVSFLG 86
+++FLG
Sbjct: 443 KKKINFLG 450
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 44.3 bits (103), Expect = 0.001
Identities = 24/89 (26%), Positives = 46/89 (50%)
Query: 12 LRIFSDAFRCYMNKIFHAYLDWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAK 71
L+I ++F+ M F +++DD+++ SE+ ++L + +E +
Sbjct: 446 LKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVFGKCREYNLKLH 505
Query: 72 LSKCEFWLSEVSFLGHIISDSGIVVTHQK 100
KC F++ EV+FLGH +D GI+ +K
Sbjct: 506 PEKCSFFMHEVTFLGHKCTDKGILPDDKK 534
>POL_SOCMV (P15629) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 692
Score = 43.9 bits (102), Expect = 0.002
Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 31 LDWFVVVFIDDILIYSR-SEEEHAEHLKIMLQVLKEKKMYAKLSKCEFWLSEVSFLGHII 89
L+ + +IDDILI+++ S+E+H ++I+LQ +KEK + K + E+ +LG I
Sbjct: 352 LEHICLAYIDDILIFTKGSKEQHVNDVRIVLQRIKEKGIIISKKKSKLIQQEIEYLGLKI 411
Query: 90 SDSGIV----VTHQKLMQ 103
+G + T +K++Q
Sbjct: 412 QGNGEIDLSPHTQEKILQ 429
>RRPO_OENBE (P31843) RNA-directed DNA polymerase homolog (Reverse
transcriptase homolog)
Length = 142
Score = 43.5 bits (101), Expect = 0.002
Identities = 19/40 (47%), Positives = 29/40 (72%), Gaps = 3/40 (7%)
Query: 23 MNKIFHAYLDWFVVVFIDDIL---IYSRSEEEHAEHLKIM 59
MN + + YLD FVVV++DD++ IYS S EH +HL+++
Sbjct: 93 MNNVLYEYLDHFVVVYLDDLVVYTIYSNSLHEHIKHLRVV 132
>POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 666
Score = 42.0 bits (97), Expect = 0.007
Identities = 16/55 (29%), Positives = 35/55 (63%)
Query: 32 DWFVVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEFWLSEVSFLG 86
D F +V++DDI+++S SE +H H+ +L+++++ + K + +++FLG
Sbjct: 388 DKFCMVYVDDIIVFSNSELDHYNHVYAVLKIVEKYGIILSKKKANLFKEKINFLG 442
>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II
Length = 1268
Score = 39.3 bits (90), Expect = 0.042
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 35 VVVFIDDILIYSRSEEEHAEHLKIMLQVLKEKKMYAKLSKCEFWLSEVSFLGHI 88
V V+ DDI+I + S EEH + L+ + + KE KC F +V+FLG +
Sbjct: 590 VAVYWDDIIISASSIEEHEKILRELFERFKEYGFRVSAEKCAFAQKQVTFLGFV 643
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.372 0.167 0.652
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,986,777
Number of Sequences: 164201
Number of extensions: 2306653
Number of successful extensions: 10053
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 10006
Number of HSP's gapped (non-prelim): 48
length of query: 818
length of database: 59,974,054
effective HSP length: 119
effective length of query: 699
effective length of database: 40,434,135
effective search space: 28263460365
effective search space used: 28263460365
T: 11
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.9 bits)
S2: 70 (31.6 bits)
Medicago: description of AC146794.13