BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146791.7 + phase: 0 /pseudo
         (694 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ROM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hn...    32  5.6

>ROM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP
           M)
          Length = 728

 Score = 32.0 bits (71), Expect = 5.6
 Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 5/65 (7%)

Query: 434 GSLMRRC*GSGVGGYLLIEEGCGIGCWLVDMVLGMGGWRMGAGVVLFGGRRLVGLEEGRV 493
           G ++ +  G G GG +   E  G G   +D + G G  RMGAG  L  G   VG E  R+
Sbjct: 381 GEIIAKQGGGGAGGSVPGIERMGPG---IDRISGAGMERMGAG--LGHGMDRVGSEIERM 435

Query: 494 GAVLD 498
           G V+D
Sbjct: 436 GLVMD 440


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.370    0.171    0.670 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,599,347
Number of Sequences: 164201
Number of extensions: 2490004
Number of successful extensions: 13690
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13690
Number of HSP's gapped (non-prelim): 1
length of query: 694
length of database: 59,974,054
effective HSP length: 117
effective length of query: 577
effective length of database: 40,762,537
effective search space: 23519983849
effective search space used: 23519983849
T: 11
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 69 (31.2 bits)