BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146789.1 + phase: 0 
         (431 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

RNFG_BUCAI (P57217) Electron transport complex protein rnfG homolog    33  1.4
RPOC_ANASP (P22704) DNA-directed RNA polymerase gamma chain (EC ...    31  7.0
ARK1_RAT (P26817) Beta-adrenergic receptor kinase 1 (EC 2.7.1.12...    31  7.0
Y831_METJA (Q58241) Hypothetical protein MJ0831                        30  9.2
PHA2_YEAST (P32452) Prephenate dehydratase (EC 4.2.1.51) (PDT)         30  9.2
COX2_ORYSA (P04373) Cytochrome c oxidase polypeptide II (EC 1.9....    30  9.2

>RNFG_BUCAI (P57217) Electron transport complex protein rnfG homolog
          Length = 164

 Score = 33.1 bits (74), Expect = 1.4
 Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 13/111 (11%)

Query: 119 RSNKRIELIYLTTMADGYAGMRNYSWGAMTLAYLYGELADACRPGHR---ALGGSVTLLT 175
           ++ K +  I  TT  DGY+G  N     +  AY  GE+ +A    H+    +G  + L  
Sbjct: 34  KNKKPVAAIVETTAPDGYSGAIN----MLVAAYFNGEIINARVLSHKETPGIGDKIDLSI 89

Query: 176 TWFLKHFPGFF--SVDLNTDYLEKYPVAARWKLEKGHGEGITYRSLLDRIQ 224
           + ++  F G +  S++     L KY      K+E+  G  IT +S+ + I+
Sbjct: 90  SNWITRFTGMYVASIEDKDFKLRKY----GGKIEQFTGATITPQSVTNSIK 136


>RPOC_ANASP (P22704) DNA-directed RNA polymerase gamma chain (EC
           2.7.7.6) (RNAP gamma subunit) (Transcriptase gamma
           chain) (RNA polymerase gamma subunit)
          Length = 625

 Score = 30.8 bits (68), Expect = 7.0
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 13/75 (17%)

Query: 177 WFLKHFPGFFSVDLNTD--------YLEKYPVAARWKLEKGHGEGITYRSLLDRIQLDDV 228
           W+LK  P + S+ L+          Y   Y V     L  G+ E +TY+ LL   Q  ++
Sbjct: 116 WYLKGIPSYISILLDMPLRDVEQIVYFNSYVV-----LSPGNAETLTYKQLLSEDQWLEI 170

Query: 229 CWRPYEEHREIQDFE 243
             + Y E  ++Q  E
Sbjct: 171 EDQIYSEDSQLQGVE 185


>ARK1_RAT (P26817) Beta-adrenergic receptor kinase 1 (EC 2.7.1.126)
           (Beta-ARK-1) (G-protein coupled receptor kinase 2)
          Length = 689

 Score = 30.8 bits (68), Expect = 7.0
 Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 11/103 (10%)

Query: 3   MGEMTVTLDDVACLMHLP-IEGRMLAHGKK---MPKHEGAALLMTYL-GVAQHEAEKICN 57
           M ++   L DV+ LM +   +    A   K   +P+    +++  YL    +   EKI +
Sbjct: 1   MADLEAVLADVSYLMAMEKSKATPAARASKKILLPEPSIRSVMQKYLEDRGEVTFEKIFS 60

Query: 58  QEYGGYISYPRLRDFYTSYLGRANVLVGTEDPEEVEELERVRT 100
           Q+ G    Y   RDFY ++L  A  LV  E  EE+E+ E++ T
Sbjct: 61  QKLG----YLLFRDFYLNHLEEAKPLV--EFYEEIEKYEKLET 97


>Y831_METJA (Q58241) Hypothetical protein MJ0831
          Length = 432

 Score = 30.4 bits (67), Expect = 9.2
 Identities = 10/28 (35%), Positives = 18/28 (63%)

Query: 256 VRRVYRHLPERVLRQYGYVQTIPRHPTD 283
           + +V + + E++L  YGY++ I  H TD
Sbjct: 8   IEKVTKAIKEKILNHYGYIRVITHHDTD 35


>PHA2_YEAST (P32452) Prephenate dehydratase (EC 4.2.1.51) (PDT)
          Length = 368

 Score = 30.4 bits (67), Expect = 9.2
 Identities = 40/158 (25%), Positives = 64/158 (40%), Gaps = 21/158 (13%)

Query: 252 IMCGVRRVYRHLPERVLRQYGYVQTIPRHPTDVRDLPPPSIVQMFIDFRTHTLKADARGV 311
           +  G +  Y H  +  L+Q+       +  +DV  LP  SI Q F      T   D   V
Sbjct: 43  LFLGPKGTYSH--QAALQQF-------QSTSDVEYLPAASIPQCFNQLENDT-SIDYSVV 92

Query: 312 QAGEDTR-RVADGYVLWYTRVSHPQILPPIPGDLPRPANEEQIIAEQWQRYEARSSPDTY 370
                T  +V   Y L   R+    +  P P D  R   + ++IAEQ+        P T+
Sbjct: 93  PLENSTNGQVVFSYDLLRDRMIKKALSLPAPADTNRITPDIEVIAEQY-------VPITH 145

Query: 371 DMVSG-AVAYADAQLG--QEEVMSMTPQQWYEAMTHMR 405
            ++S   +    A LG  +E ++   PQ W +   ++R
Sbjct: 146 CLISPIQLPNGIASLGNFEEVIIHSHPQVWGQVECYLR 183


>COX2_ORYSA (P04373) Cytochrome c oxidase polypeptide II (EC
           1.9.3.1)
          Length = 260

 Score = 30.4 bits (67), Expect = 9.2
 Identities = 26/110 (23%), Positives = 43/110 (38%), Gaps = 17/110 (15%)

Query: 318 RRVADGYVLWYTRVSHPQILP------------PIPGDLPRPANEEQIIAEQWQR---YE 362
           +R+  G  +   R   P ++P             + G L  PA   + I  QW R   Y 
Sbjct: 75  QRIVHGTTIEIIRTIFPSVIPLFIAIPSFALLYSMDGVLVDPAITIKAIGHQWYRSYEYS 134

Query: 363 ARSSPDTYDMV--SGAVAYADAQLGQEEVMSMTPQQWYEAMTHMREQIAP 410
             +S D   +   S  +   D +LGQ  ++ +  +    A TH+R  + P
Sbjct: 135 DYNSSDEQSLTFDSYTIPEDDPELGQSRLLEVDNRVVVPAKTHLRMIVTP 184


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.323    0.139    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,380,686
Number of Sequences: 164201
Number of extensions: 2465910
Number of successful extensions: 4952
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4951
Number of HSP's gapped (non-prelim): 7
length of query: 431
length of database: 59,974,054
effective HSP length: 113
effective length of query: 318
effective length of database: 41,419,341
effective search space: 13171350438
effective search space used: 13171350438
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)