BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146776.6 - phase: 0
(388 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POFA_SCHPO (Q9P7W4) F-box/WD-repeat protein pof10 (Skp1-binding ... 46 2e-04
FXLC_MOUSE (Q9EPX5) F-box/LRR-repeat protein 12 (F-box and leuci... 37 0.11
FXLC_HUMAN (Q9NXK8) F-box/LRR-repeat protein 12 (F-box and leuci... 36 0.15
FX44_MOUSE (Q8BK26) F-box only protein 44 (F-box only protein 6a) 35 0.25
FX44_HUMAN (Q9H4M3) F-box only protein 44 (F-box protein FBX30) ... 34 0.55
FBX6_MOUSE (Q9QZN4) F-box only protein 6 (F-box only protein 6b) 34 0.55
FBX6_HUMAN (Q9NRD1) F-box only protein 6 (F-box/G-domain protein 2) 34 0.55
PRSG_ECOLI (P42188) Fimbrial protein prsG precursor (Adhesin) 34 0.72
FX22_HUMAN (Q8NEZ5) F-box only protein 22 (F-box protein FBX22p44) 33 0.95
YAE8_YEAST (P39722) Hypothetical 75.2 kDa protein in ACS1-GCV3 i... 33 1.2
FX18_MOUSE (Q8K2I9) F-box only protein 18 (EC 3.6.1.-) (F-box DN... 33 1.2
FX18_HUMAN (Q8NFZ0) F-box only protein 18 (EC 3.6.1.-) (F-box DN... 33 1.2
FX17_HUMAN (Q96EF6) F-box only protein 17 (F-box only protein 26) 33 1.2
FBX2_MOUSE (Q80UW2) F-box only protein 2 33 1.2
FX17_MOUSE (Q9QZM8) F-box only protein 17 (F-box only protein 26) 33 1.6
Y087_BUCAI (P57189) Hypothetical protein BU087 32 2.1
POF3_SCHPO (O74991) F-box/TPR-repeat protein pof3 32 2.8
FBX6_RAT (Q923V4) F-box only protein 6 (F-box only protein 6b) (... 32 2.8
FX11_RAT (Q7TSL3) F-box only protein 11 31 4.7
FX11_HUMAN (Q86XK2) F-box only protein 11 (Vitiligo-associated p... 31 4.7
>POFA_SCHPO (Q9P7W4) F-box/WD-repeat protein pof10 (Skp1-binding
protein 2)
Length = 662
Score = 45.8 bits (107), Expect = 2e-04
Identities = 25/61 (40%), Positives = 33/61 (53%), Gaps = 6/61 (9%)
Query: 9 SKTRRRLRQHSQNVTVFTQSVSEITADMPEEIIVEILLRLPVRSLLQFRCVCKLWKTLIS 68
S RR R HS N T + ++P+EI++ I L RSLL +C CK WK L+S
Sbjct: 13 SNLRRMNRDHSSNNT------NRTVLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLS 66
Query: 69 D 69
D
Sbjct: 67 D 67
>FXLC_MOUSE (Q9EPX5) F-box/LRR-repeat protein 12 (F-box and
leucine-rich repeat protein 12) (F-box protein FBL12)
Length = 326
Score = 36.6 bits (83), Expect = 0.11
Identities = 16/46 (34%), Positives = 29/46 (62%), Gaps = 1/46 (2%)
Query: 35 DMPEEIIVEILLRLPVRSLLQFRCVCKLWKTLISDPQFAKKHVSIS 80
D+P+ +++EI LPVR ++ VC WK L+ D ++ +HV ++
Sbjct: 6 DLPDLVLLEIFSYLPVRDRIRISRVCHRWKRLVDD-RWLWRHVDLT 50
>FXLC_HUMAN (Q9NXK8) F-box/LRR-repeat protein 12 (F-box and
leucine-rich repeat protein 12) (F-box protein FBL12)
Length = 326
Score = 36.2 bits (82), Expect = 0.15
Identities = 15/46 (32%), Positives = 29/46 (62%), Gaps = 1/46 (2%)
Query: 35 DMPEEIIVEILLRLPVRSLLQFRCVCKLWKTLISDPQFAKKHVSIS 80
++P+ +++EI LPVR ++ VC WK L+ D ++ +HV ++
Sbjct: 6 ELPDSVLLEIFSYLPVRDRIRISRVCHRWKRLVDD-RWLWRHVDLT 50
>FX44_MOUSE (Q8BK26) F-box only protein 44 (F-box only protein 6a)
Length = 255
Score = 35.4 bits (80), Expect = 0.25
Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 35 DMPEEIIVEILLRLPVRS-LLQFRCVCKLWKTLI 67
++PE I++E+ + +P R LL+ R VC LW+ LI
Sbjct: 8 ELPENILLELFIHIPARQLLLRCRPVCSLWRDLI 41
>FX44_HUMAN (Q9H4M3) F-box only protein 44 (F-box protein FBX30)
(F-box/G-domain protein 3)
Length = 255
Score = 34.3 bits (77), Expect = 0.55
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 35 DMPEEIIVEILLRLPVRS-LLQFRCVCKLWKTLI 67
++PE I++E+ +P R LL R VC LW+ LI
Sbjct: 8 ELPENILLELFTHVPARQLLLNCRLVCSLWRDLI 41
>FBX6_MOUSE (Q9QZN4) F-box only protein 6 (F-box only protein 6b)
Length = 295
Score = 34.3 bits (77), Expect = 0.55
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 35 DMPEEIIVEILLRLPVRSLLQ-FRCVCKLWKTLI 67
++PE I++E+ + +P LL+ R VC+LW+ LI
Sbjct: 6 ELPENILLELFIHIPAPQLLRNCRLVCRLWRDLI 39
>FBX6_HUMAN (Q9NRD1) F-box only protein 6 (F-box/G-domain protein
2)
Length = 293
Score = 34.3 bits (77), Expect = 0.55
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 35 DMPEEIIVEILLRLPVRS-LLQFRCVCKLWKTLI 67
++PE I++E+ +P R LL R VC LW+ LI
Sbjct: 15 ELPENILLELFTHVPARQLLLNCRLVCSLWRDLI 48
>PRSG_ECOLI (P42188) Fimbrial protein prsG precursor (Adhesin)
Length = 335
Score = 33.9 bits (76), Expect = 0.72
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 8/64 (12%)
Query: 149 WNPSIKLKSKPSPTIIAFDSFDSKRFLYRGFGYDQVNDRYKVLAVVQNCYNLDETKTLIY 208
+N ++L+S+ S ++ A D+ +L +GF +D+ N Q C+N+ E ++L +
Sbjct: 97 YNIYLELQSRGSFSLDAEDN--DNYYLTKGFAWDEANTSG------QTCFNIGEKRSLAW 148
Query: 209 TFGG 212
+FGG
Sbjct: 149 SFGG 152
>FX22_HUMAN (Q8NEZ5) F-box only protein 22 (F-box protein
FBX22p44)
Length = 403
Score = 33.5 bits (75), Expect = 0.95
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 39 EIIVEILLRLPVRSLLQFRCVCKLWKTLI 67
E++ +L LP ++LL+ CVC+LW+ +
Sbjct: 28 EVVERVLTFLPAKALLRVACVCRLWRECV 56
>YAE8_YEAST (P39722) Hypothetical 75.2 kDa protein in ACS1-GCV3
intergenic region
Length = 662
Score = 33.1 bits (74), Expect = 1.2
Identities = 20/68 (29%), Positives = 34/68 (49%), Gaps = 6/68 (8%)
Query: 241 GNLNWIVSKKVIVFFDIEKETYGEMSLPQD------YGDKNTVLYVSSNRIYVSFDHSNK 294
G + IVS F ++ +S+P+D Y KNTVL +S+ ++ DH K
Sbjct: 17 GKSSLIVSLTKAEFIPTIQDVLPPISIPRDFSSSPTYSPKNTVLIDTSDSDLIALDHELK 76
Query: 295 THWVVWMM 302
+ V+W++
Sbjct: 77 SADVIWLV 84
>FX18_MOUSE (Q8K2I9) F-box only protein 18 (EC 3.6.1.-) (F-box DNA
helicase 1)
Length = 1042
Score = 33.1 bits (74), Expect = 1.2
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 27 QSVSEITADMPEEIIVEILLRLPVRSLL-QFRCVCKLWKTLISDPQF 72
Q V +P E++ I LPV L VC LW+ +I+DP F
Sbjct: 204 QEVPSHICRLPSEVLRHIFAFLPVEDLYWNLSLVCHLWREIINDPLF 250
>FX18_HUMAN (Q8NFZ0) F-box only protein 18 (EC 3.6.1.-) (F-box DNA
helicase 1)
Length = 1043
Score = 33.1 bits (74), Expect = 1.2
Identities = 15/38 (39%), Positives = 21/38 (54%), Gaps = 1/38 (2%)
Query: 36 MPEEIIVEILLRLPVRSLL-QFRCVCKLWKTLISDPQF 72
+P E++ + LPV L VC LW+ +ISDP F
Sbjct: 215 LPSEVLRHVFAFLPVEDLYWNLSLVCHLWREIISDPLF 252
>FX17_HUMAN (Q96EF6) F-box only protein 17 (F-box only protein 26)
Length = 278
Score = 33.1 bits (74), Expect = 1.2
Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 36 MPEEIIVEILLRLPVRSLL-QFRCVCKLWKTLISDP 70
+P E++V++L +P RSL+ + R VC+ W+ ++ P
Sbjct: 21 LPPELLVQVLSHVPPRSLVTRCRPVCRAWRDIVDGP 56
>FBX2_MOUSE (Q80UW2) F-box only protein 2
Length = 297
Score = 33.1 bits (74), Expect = 1.2
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 31 EITADMPEEIIVEILLRLPVRSLLQ-FRCVCKLWKTLI 67
E A++PE +++ +L LP L+Q R VC WK L+
Sbjct: 49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELV 86
>FX17_MOUSE (Q9QZM8) F-box only protein 17 (F-box only protein 26)
Length = 286
Score = 32.7 bits (73), Expect = 1.6
Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 36 MPEEIIVEILLRLPVRSLL-QFRCVCKLWKTLISDP 70
+P E++V++L +P R+L+ + R VC+ W+ L+ P
Sbjct: 21 LPPELLVQVLSHVPPRALVTRCRPVCRAWRDLVDGP 56
>Y087_BUCAI (P57189) Hypothetical protein BU087
Length = 970
Score = 32.3 bits (72), Expect = 2.1
Identities = 52/210 (24%), Positives = 85/210 (39%), Gaps = 43/210 (20%)
Query: 96 CNLVSYPLKPLLDNPSAHRVEPADFEMIHTTSMTIIGS------CNGLLCLSDFYQFTLW 149
C + S + P L N S + A+F + H +I NGL+ F F+ +
Sbjct: 291 CVMNSKTVIPSLYNKSINFQLKANFNVDHQLIFKLISKDLYNMKINGLV----FLNFSDY 346
Query: 150 NPSIKLKSKPSPTIIAFDSFDSKRFLYRGFGYDQVNDRYKVLAVVQNCYNLDETKTLIYT 209
IKL+S+ +I K ++++ +D V Y + N Y
Sbjct: 347 PFFIKLQSRNLSCVI------KKNYIFKLKSFDGVLKGY-----INN-----------YF 384
Query: 210 FGGKDWTTIQKFPCDPSRCDL-GRLGVGKFVSGNLNWIVSKKVIVFFDIEKETYGEMSLP 268
F K+ T+Q P P D+ GR G+LN I KK+ F +K+ Y ++ P
Sbjct: 385 FSLKNIFTLQDLP--PIFIDIQGR--------GDLNNIFLKKINFFPIKQKKFYKKVIHP 434
Query: 269 QDYGDKNTVLYVSSNRIYVSFDHSNKTHWV 298
+DY N + +I ++ TH+V
Sbjct: 435 EDYIKYNQYILKLIGQINITGKSDRHTHYV 464
>POF3_SCHPO (O74991) F-box/TPR-repeat protein pof3
Length = 577
Score = 32.0 bits (71), Expect = 2.8
Identities = 32/159 (20%), Positives = 70/159 (43%), Gaps = 5/159 (3%)
Query: 13 RRLRQHSQNVTVFTQSVSEITADMPEEIIVEILLRLPVRSLLQFRCVCKLWKTLISDPQF 72
+++ Q + T+ V ++ +P E+++ IL +L +S++Q VCK W+ I
Sbjct: 116 KKVSQRLNERILRTRPVLDLFRILPREVLLCILQQLNFKSIVQCMQVCKHWRDCIKKEPS 175
Query: 73 AKKHVSISTAYPQLVSV----FVSIAKCNLVSYP-LKPLLDNPSAHRVEPADFEMIHTTS 127
+ S A P+ V+ +++A+ ++ S ++ ++ + P + S
Sbjct: 176 LFCCLDFSCASPRSVNSRDRNVMAVARYSVYSKDNIQEVIGLEKLGILTPTKALLRSVKS 235
Query: 128 MTIIGSCNGLLCLSDFYQFTLWNPSIKLKSKPSPTIIAF 166
+ + + + L S +T+W P +L T I F
Sbjct: 236 LKVYKTISPLHTQSTDKLYTIWTPFSELHYFYCATPITF 274
>FBX6_RAT (Q923V4) F-box only protein 6 (F-box only protein 6b)
(F-box/G-domain protein 2)
Length = 284
Score = 32.0 bits (71), Expect = 2.8
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 35 DMPEEIIVEILLRLPVRSLLQ-FRCVCKLWKTLI 67
++PE I++E+ +P LL+ R VC LW+ LI
Sbjct: 6 ELPENILLELFTHVPAPQLLRNCRLVCSLWRDLI 39
>FX11_RAT (Q7TSL3) F-box only protein 11
Length = 843
Score = 31.2 bits (69), Expect = 4.7
Identities = 17/64 (26%), Positives = 34/64 (52%), Gaps = 1/64 (1%)
Query: 12 RRRLRQHSQNVTVFTQSVSEITADMPEEIIVEILLRLPVRSLLQFRCVCKLWKTLISDPQ 71
R R+ SQ+++ + + +P+E++++I L + L + CVCK + L +DP
Sbjct: 52 RARVSGKSQDLSA-APAEQYLQEKLPDEVVLKIFSYLLEQDLCRAACVCKRFSELANDPI 110
Query: 72 FAKK 75
K+
Sbjct: 111 LWKR 114
>FX11_HUMAN (Q86XK2) F-box only protein 11 (Vitiligo-associated
protein VIT-1)
Length = 843
Score = 31.2 bits (69), Expect = 4.7
Identities = 17/64 (26%), Positives = 34/64 (52%), Gaps = 1/64 (1%)
Query: 12 RRRLRQHSQNVTVFTQSVSEITADMPEEIIVEILLRLPVRSLLQFRCVCKLWKTLISDPQ 71
R R+ SQ+++ + + +P+E++++I L + L + CVCK + L +DP
Sbjct: 52 RARVSGKSQDLSA-APAEQYLQEKLPDEVVLKIFSYLLEQDLCRAACVCKRFSELANDPI 110
Query: 72 FAKK 75
K+
Sbjct: 111 LWKR 114
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.323 0.138 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,318,479
Number of Sequences: 164201
Number of extensions: 2008811
Number of successful extensions: 3866
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 3853
Number of HSP's gapped (non-prelim): 30
length of query: 388
length of database: 59,974,054
effective HSP length: 112
effective length of query: 276
effective length of database: 41,583,542
effective search space: 11477057592
effective search space used: 11477057592
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)
Medicago: description of AC146776.6