BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146759.10 + phase: 1 /partial
(178 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RS3_ICTPU (Q90YS2) 40S ribosomal protein S3 260 1e-69
RS3_RAT (P62909) 40S ribosomal protein S3 259 2e-69
RS3_MOUSE (P62908) 40S ribosomal protein S3 259 2e-69
RS3B_XENLA (P47835) 40S ribosomal protein S3B (S1B) 259 2e-69
RS3A_XENLA (P02350) 40S ribosomal protein S3A (S1A) 259 2e-69
RS3_MANSE (P48153) 40S ribosomal protein S3 259 3e-69
RS3_HUMAN (P23396) 40S ribosomal protein S3 259 3e-69
RS3_AMBME (P79891) 40S ribosomal protein S3 258 7e-69
RS3_DROME (Q06559) 40S ribosomal protein S3 246 2e-65
RS3_SCHPO (O60128) 40S ribosomal protein S3 243 2e-64
RS3_CAEEL (P48152) 40S ribosomal protein S3 241 5e-64
RS3_YEAST (P05750) 40S ribosomal protein S3 (YS3) (RP13) 216 2e-56
RS3_ENCCU (Q8SQM3) 40S ribosomal protein S3 154 1e-37
RS3_PYRFU (Q8U004) 30S ribosomal protein S3P 104 1e-22
RS3_PYRAB (Q9V1U1) 30S ribosomal protein S3P 99 4e-21
RS3_PYRHO (O59424) 30S ribosomal protein S3P 99 7e-21
RS3_METJA (P54034) 30S ribosomal protein S3P 85 8e-17
RS3_HALMA (P20281) 30S ribosomal protein S3P (HmaS3) (HS1) 84 2e-16
RS3_METTH (O26116) 30S ribosomal protein S3P 82 5e-16
RS3_METAC (Q8TRU1) 30S ribosomal protein S3P 82 7e-16
>RS3_ICTPU (Q90YS2) 40S ribosomal protein S3
Length = 245
Score = 260 bits (664), Expect = 1e-69
Identities = 137/178 (76%), Positives = 144/178 (79%), Gaps = 3/178 (1%)
Query: 1 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 60
EKGRRIRELT+VVQKRF FP SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPRGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 61 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 120
GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PV Y+D+AVRHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
Query: 121 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYIRPAAVVANDIEVPVPVPV 178
VLGIKVKIML WDP GK GPK PLPD V+I PKEE I P V+ VPV
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEE---ILPTTPVSEQKGAKPEVPV 235
>RS3_RAT (P62909) 40S ribosomal protein S3
Length = 243
Score = 259 bits (662), Expect = 2e-69
Identities = 131/156 (83%), Positives = 138/156 (87%)
Query: 1 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 60
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 61 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 120
GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PV Y+D+AVRHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
Query: 121 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEE 156
VLGIKVKIML WDP GK GPK PLPD V+I PK+E
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216
>RS3_MOUSE (P62908) 40S ribosomal protein S3
Length = 243
Score = 259 bits (662), Expect = 2e-69
Identities = 131/156 (83%), Positives = 138/156 (87%)
Query: 1 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 60
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 61 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 120
GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PV Y+D+AVRHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
Query: 121 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEE 156
VLGIKVKIML WDP GK GPK PLPD V+I PK+E
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216
>RS3B_XENLA (P47835) 40S ribosomal protein S3B (S1B)
Length = 246
Score = 259 bits (662), Expect = 2e-69
Identities = 131/156 (83%), Positives = 138/156 (87%)
Query: 1 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 60
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 61 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 120
GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PV Y+D+AVRHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
Query: 121 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEE 156
VLGIKVKIML WDP GK GPK PLPD V+I PK+E
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216
>RS3A_XENLA (P02350) 40S ribosomal protein S3A (S1A)
Length = 246
Score = 259 bits (662), Expect = 2e-69
Identities = 131/156 (83%), Positives = 138/156 (87%)
Query: 1 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 60
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 61 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 120
GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PV Y+D+AVRHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
Query: 121 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEE 156
VLGIKVKIML WDP GK GPK PLPD V+I PK+E
Sbjct: 181 VLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKDE 216
>RS3_MANSE (P48153) 40S ribosomal protein S3
Length = 243
Score = 259 bits (661), Expect = 3e-69
Identities = 128/178 (71%), Positives = 144/178 (79%)
Query: 1 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 60
EKGRRIRELTSVVQKRF PE SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACY
Sbjct: 62 EKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 121
Query: 61 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 120
GVLRF+MESGA+GCEV+VSGKLR QRAKSMKF DG MI SG P DY+++A RHVLLRQG
Sbjct: 122 GVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQG 181
Query: 121 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYIRPAAVVANDIEVPVPVPV 178
VLGIKVKIML WD +GK GPK P PD + + PK+E + P + + + P+P PV
Sbjct: 182 VLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPAPLEPTSDIRSLAPAPLPQPV 239
>RS3_HUMAN (P23396) 40S ribosomal protein S3
Length = 243
Score = 259 bits (661), Expect = 3e-69
Identities = 131/156 (83%), Positives = 138/156 (87%)
Query: 1 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 60
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 61 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 120
GVLRF+MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG PV Y+D+AVRHVLLRQG
Sbjct: 121 GVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
Query: 121 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEE 156
VLGIKVKIML WDP GK GPK PLPD V+I PK+E
Sbjct: 181 VLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDE 216
>RS3_AMBME (P79891) 40S ribosomal protein S3
Length = 253
Score = 258 bits (658), Expect = 7e-69
Identities = 130/156 (83%), Positives = 138/156 (88%)
Query: 1 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 60
EKGRRIRELT+VVQKRF FPE SVELYAEKV RGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 61 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 120
GVLRF+MESG+KGCEV+VSGKLR QRAKSMKF DG MI SG PV Y+D+AVRHVLLRQG
Sbjct: 121 GVLRFIMESGSKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQG 180
Query: 121 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEE 156
VLGIKVKIML WDP GK GPK PLPD V+I PK+E
Sbjct: 181 VLGIKVKIMLAWDPSGKIGPKKPLPDHVSIVEPKDE 216
>RS3_DROME (Q06559) 40S ribosomal protein S3
Length = 246
Score = 246 bits (628), Expect = 2e-65
Identities = 125/177 (70%), Positives = 141/177 (79%), Gaps = 6/177 (3%)
Query: 1 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 60
EKGRRIRELT++VQKRF F +ELYAEKV RGLCAIAQAESLRYKL GGLAVRRACY
Sbjct: 63 EKGRRIRELTAMVQKRFNFETGRIELYAEKVAARGLCAIAQAESLRYKLTGGLAVRRACY 122
Query: 61 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 120
GVLR++MESGAKGCEV+VSGKLR QRAKSMKF DG MI SG P DY+++A RHVLLRQG
Sbjct: 123 GVLRYIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVETATRHVLLRQG 182
Query: 121 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYIRPAAVVANDIEVPVPVP 177
VLGIKVK+ML +DPK K GPK PLPD V++ PKEE+ Y P + E +P P
Sbjct: 183 VLGIKVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETP------ETEYKIPPP 233
>RS3_SCHPO (O60128) 40S ribosomal protein S3
Length = 249
Score = 243 bits (619), Expect = 2e-64
Identities = 124/171 (72%), Positives = 140/171 (81%), Gaps = 3/171 (1%)
Query: 1 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 60
EKGRRIRELT++VQKRFKF EN+VELYAEKV NRGLCA+AQ ESLRYKLL GLAVRRA Y
Sbjct: 63 EKGRRIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAY 122
Query: 61 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 120
GVLR+VME+GAKGCEV++SGKLRA RAKSMKF DG+MI SGQP D+IDSA RHVLLRQG
Sbjct: 123 GVLRYVMEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQG 182
Query: 121 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYIRPAAVVANDIE 171
VLG+KVKIML P+ K K LPDIV + PKEEE +P V+ +E
Sbjct: 183 VLGVKVKIML---PEPKTRQKKSLPDIVVVLDPKEEEPITKPYTVINQPVE 230
>RS3_CAEEL (P48152) 40S ribosomal protein S3
Length = 247
Score = 241 bits (616), Expect = 5e-64
Identities = 126/181 (69%), Positives = 143/181 (78%), Gaps = 3/181 (1%)
Query: 1 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 60
E+GRRI+ELTSVVQKRF F E SVELYAEKV+NRGLCA+AQ ESLRYKL+GGLAVRRACY
Sbjct: 63 ERGRRIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACY 122
Query: 61 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 120
GVLRF+MESGA+G EVIVSGKLR QRAK+MKF DG MI SG PV DYI AVRHV LRQG
Sbjct: 123 GVLRFIMESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLRQG 182
Query: 121 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEE---EEYIRPAAVVANDIEVPVPVP 177
V+GIKVKIML +DP+G+ GP+ LPD V I P+EE +E D++VP P
Sbjct: 183 VIGIKVKIMLPYDPRGQNGPRNALPDHVQIVEPQEEVLPKEPHSQHKEEKKDVQVPAAQP 242
Query: 178 V 178
V
Sbjct: 243 V 243
>RS3_YEAST (P05750) 40S ribosomal protein S3 (YS3) (RP13)
Length = 239
Score = 216 bits (550), Expect = 2e-56
Identities = 110/163 (67%), Positives = 133/163 (81%), Gaps = 2/163 (1%)
Query: 1 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 60
E GRRI ELT +VQKRFK+ ++ LYAE+V +RGL A+AQAES+++KLL GLA+RRA Y
Sbjct: 60 ENGRRINELTLLVQKRFKYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAY 119
Query: 61 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 120
GV+R+VMESGAKGCEV+VSGKLRA RAK+MKF DG++I SGQPV D+ID+A RHVL+RQG
Sbjct: 120 GVVRYVMESGAKGCEVVVSGKLRAARAKAMKFADGFLIHSGQPVNDFIDTATRHVLMRQG 179
Query: 121 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYIRPA 163
VLGIKVKIM D K + GPK LPD VTI PKEEE + P+
Sbjct: 180 VLGIKVKIMRD-PAKSRTGPKA-LPDAVTIIEPKEEEPILAPS 220
>RS3_ENCCU (Q8SQM3) 40S ribosomal protein S3
Length = 228
Score = 154 bits (388), Expect = 1e-37
Identities = 76/155 (49%), Positives = 107/155 (69%)
Query: 1 EKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 60
EK R+R+ + +R + P+ SVE+ EKV+ +GLCA+ QA +R K+LGG+ RRA
Sbjct: 72 EKKFRLRQFQHLAAQRLEVPDESVEIVVEKVHEKGLCALIQANFIREKILGGVQYRRAVN 131
Query: 61 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 120
L+ + A+GC++IVSGKL+ QRAKS+KF+DG +I SG VKDYI++ V +QG
Sbjct: 132 MALKTARHAKAQGCQIIVSGKLKGQRAKSVKFQDGVLIHSGDAVKDYINTGYATVETKQG 191
Query: 121 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKE 155
V+GI+V+IML +DP+G GP PLPD +TI P E
Sbjct: 192 VIGIQVRIMLPYDPEGVLGPNYPLPDRITILEPSE 226
>RS3_PYRFU (Q8U004) 30S ribosomal protein S3P
Length = 210
Score = 104 bits (259), Expect = 1e-22
Identities = 66/169 (39%), Positives = 93/169 (54%), Gaps = 17/169 (10%)
Query: 3 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 62
GRRIRELT +++K+F +E+ E++ N L A QA L L G+ RRA Y
Sbjct: 59 GRRIRELTRILEKQFGLENPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAA 116
Query: 63 LRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVL 122
LR +M +GA+G E+ +SGKL +RAKS++F GY+ G P + + LL+ GV+
Sbjct: 117 LRAIMNNGARGVEIRLSGKLTGERAKSIRFYQGYLAKVGNPAETLVSKGYAQALLKLGVI 176
Query: 123 GIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYIRPAAVVANDIE 171
G+KV IM P G + P +I I P EEE VV+N+ E
Sbjct: 177 GVKVAIM----PPGARLP----DEIEIIEKPVEEE-------VVSNEAE 210
>RS3_PYRAB (Q9V1U1) 30S ribosomal protein S3P
Length = 210
Score = 99.4 bits (246), Expect = 4e-21
Identities = 58/156 (37%), Positives = 86/156 (54%), Gaps = 12/156 (7%)
Query: 3 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 62
GRRIRELT +++++F +++ +++ N L A QA + L G+ RRA Y
Sbjct: 59 GRRIRELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAA 116
Query: 63 LRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVL 122
+R +M +GA+G E+ +SGKL +RAKS++F GY+ G P + + LL+ GV+
Sbjct: 117 MRAIMSNGARGVEIRISGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVI 176
Query: 123 GIKVKIMLDWDPKGKQGPKTPLPD-IVTIHTPKEEE 157
G+KV IM P LPD I I P EEE
Sbjct: 177 GVKVAIM---------PPDARLPDEIEIIEKPVEEE 203
>RS3_PYRHO (O59424) 30S ribosomal protein S3P
Length = 210
Score = 98.6 bits (244), Expect = 7e-21
Identities = 57/156 (36%), Positives = 86/156 (54%), Gaps = 12/156 (7%)
Query: 3 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 62
GRRIRELT +++++F +++ +++ N L A QA + L G+ RRA Y
Sbjct: 59 GRRIRELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYSA 116
Query: 63 LRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVL 122
+R +M +GA+G E+ +SGKL +RAKS++F GY+ G P + + LL+ GV+
Sbjct: 117 MRAIMNNGARGVEIRLSGKLTGERAKSVRFYQGYLAKVGNPAETLVSKGYAQALLKLGVI 176
Query: 123 GIKVKIMLDWDPKGKQGPKTPLPD-IVTIHTPKEEE 157
G+KV IM P LPD I + P EEE
Sbjct: 177 GVKVAIM---------PPDARLPDEIEIVEKPAEEE 203
>RS3_METJA (P54034) 30S ribosomal protein S3P
Length = 208
Score = 85.1 bits (209), Expect = 8e-17
Identities = 57/157 (36%), Positives = 82/157 (51%), Gaps = 14/157 (8%)
Query: 2 KGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYG 61
+G RIRELT + K F + +++ + V N L A A+ + L GL RR +
Sbjct: 57 RGSRIRELTETLAKEFGVEKPQIDV--KPVENPDLDAQVVAQKVAQSLERGLHFRRVGHT 114
Query: 62 VLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGV 121
+R VM +GAKG VI+SGKL +RA++ KF GYM G+P ++ +D + GV
Sbjct: 115 AVRRVMNAGAKGVIVIISGKLTGERARTEKFMAGYMKHCGEPAEELVDKGRAIAKTKPGV 174
Query: 122 LGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEE 158
+G+ VKIM P LPD + I KE+ E
Sbjct: 175 IGVTVKIM---------RPDVLLPDEIII---KEDAE 199
>RS3_HALMA (P20281) 30S ribosomal protein S3P (HmaS3) (HS1)
Length = 304
Score = 83.6 bits (205), Expect = 2e-16
Identities = 48/158 (30%), Positives = 88/158 (55%), Gaps = 11/158 (6%)
Query: 3 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 62
G+ IR++T+ ++ RF + V++ ++V+ L A A+ L L G R+A +
Sbjct: 59 GKNIRKITTELEDRFNLDDPQVDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTT 116
Query: 63 LRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVL 122
+ +MESGA G E+++SGK+ R++ KF GY+ +G+P ++ +DS V +++ G +
Sbjct: 117 IDRIMESGALGAEIVLSGKVTGARSRVEKFNRGYVKHNGEPAEEIVDSGVGVAVMKLGTI 176
Query: 123 GIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYI 160
G++VKI+ P LPD I+ + E+Y+
Sbjct: 177 GVRVKII---------PPNAELPDDFEIYEDVDVEDYV 205
>RS3_METTH (O26116) 30S ribosomal protein S3P
Length = 258
Score = 82.4 bits (202), Expect = 5e-16
Identities = 55/172 (31%), Positives = 85/172 (48%), Gaps = 14/172 (8%)
Query: 3 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 62
G+ +R +T ++ +F VE+ ++V+ L A + L G+ RR Y
Sbjct: 58 GKTVRAITQKLKNKFDLENPQVEV--KEVDVPELNPKIMAHKIAAMLQRGMHFRRVAYTT 115
Query: 63 LRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVL 122
+R +M +GA+G EV +SGK+R R+ + KF DGY+ G+P ++ V L+ GVL
Sbjct: 116 MRRIMAAGAQGVEVTISGKIRGARSATAKFTDGYIKKCGEPSVKHVREGFATVQLKPGVL 175
Query: 123 GIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEE---EYIRPAAVVANDIE 171
G+ V+IM P LPD V I P+ E E A+ V D+E
Sbjct: 176 GVYVRIM---------PPDVVLPDKVEIEDPRVTETPAEEASEASEVVEDLE 218
>RS3_METAC (Q8TRU1) 30S ribosomal protein S3P
Length = 318
Score = 82.0 bits (201), Expect = 7e-16
Identities = 53/156 (33%), Positives = 78/156 (49%), Gaps = 11/156 (7%)
Query: 3 GRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 62
G+ IR+LT V ++ ++ A++V L A A L + G R+A +
Sbjct: 59 GKVIRKLTRDVANKYSLENPQID--AQEVKRPELNAQMMASRLAASIERGWYFRKAGHNT 116
Query: 63 LRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVL 122
LR VM +GA GCEV++SGKL R++ KF DGY+ SG PV++ +D + + G L
Sbjct: 117 LRAVMNAGALGCEVVISGKLTGARSRVEKFVDGYIKHSGNPVEEVVDEGFAVAVKKLGTL 176
Query: 123 GIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEE 158
G KV+I+ P LPD + E EE
Sbjct: 177 GCKVRII---------QPGVVLPDSYKVRESVEVEE 203
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.319 0.138 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,765,472
Number of Sequences: 164201
Number of extensions: 868046
Number of successful extensions: 2238
Number of sequences better than 10.0: 161
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 2141
Number of HSP's gapped (non-prelim): 162
length of query: 178
length of database: 59,974,054
effective HSP length: 103
effective length of query: 75
effective length of database: 43,061,351
effective search space: 3229601325
effective search space used: 3229601325
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Medicago: description of AC146759.10