BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146759.1 + phase: 0 /pseudo
(188 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RCA1_YEAST (P40341) Mitochondrial respiratory chain complexes as... 54 2e-07
AFG3_YEAST (P39925) Mitochondrial respiratory chain complexes as... 47 3e-05
AF31_MOUSE (Q920A7) AFG3-like protein 1 (EC 3.4.24.-) 45 8e-05
AF32_HUMAN (Q9Y4W6) AFG3-like protein 2 (EC 3.4.24.-) (Paraplegi... 44 3e-04
Y088_METJA (Q57553) Hypothetical protein MJ0088 34 0.17
LR15_RAT (Q8R5M3) Leucine-rich repeat-containing protein 15 prec... 31 1.5
LR15_MOUSE (Q80X72) Leucine-rich repeat-containing protein 15 pr... 31 1.5
CD97_MOUSE (Q9Z0M6) CD97 antigen precursor 31 1.5
NU6M_LOCMI (Q36425) NADH-ubiquinone oxidoreductase chain 6 (EC 1... 30 4.3
K052_HUMAN (P42285) Protein KIAA0052 (Fragment) 30 4.3
PRSA_CLOTE (Q899I2) Foldase protein prsA precursor (EC 5.2.1.8) 28 9.6
NPBL_CAEEL (Q95XZ5) Nipped-B-like protein pqn-85 (Prion-like-(Q/... 28 9.6
KGUA_RICCN (Q92GC9) Guanylate kinase (EC 2.7.4.8) (GMP kinase) 28 9.6
KDSA_RALSO (Q8Y0B7) 2-dehydro-3-deoxyphosphooctonate aldolase (E... 28 9.6
>RCA1_YEAST (P40341) Mitochondrial respiratory chain complexes
assembly protein RCA1 (EC 3.4.24.-) (TAT-binding homolog
12)
Length = 825
Score = 54.3 bits (129), Expect = 2e-07
Identities = 27/67 (40%), Positives = 41/67 (60%), Gaps = 4/67 (5%)
Query: 54 KNQEISFQEFKIKVLEPGLVDHIVVSNKELAKIYV----KNNESEVAKYKYYFKIGSVDS 109
+ EI++Q+F+ K+L G V ++V NK + K+ + KN + YYF IGS+DS
Sbjct: 202 EQSEITWQDFREKLLAKGYVAKLIVVNKSMVKVMLNDNGKNQADNYGRNFYYFTIGSIDS 261
Query: 110 FERKLKK 116
FE KL+K
Sbjct: 262 FEHKLQK 268
>AFG3_YEAST (P39925) Mitochondrial respiratory chain complexes
assembly protein AFG3 (EC 3.4.24.-) (TAT-binding homolog
10)
Length = 761
Score = 47.0 bits (110), Expect = 3e-05
Identities = 40/120 (33%), Positives = 52/120 (43%), Gaps = 13/120 (10%)
Query: 3 NDKKKTNSQSLAQWMKVAVVGSFQEAL--KKLGTLMTLIGGLILSFFYFRPFGKN----- 55
N K NS K GS E K+ M L G + F P N
Sbjct: 85 NGNKDNNSNKEDGKDKRNEFGSLSEYFRSKEFANTMFLTIGFTIIFTLLTPSSNNSGDDS 144
Query: 56 -QEISFQEFKIKVLEPGLVDHIVVSNKELAKIYVKNNESEVAKYKYYFKIGSVDSFERKL 114
+ ++FQ+FK K LE GLV I V NK L + + N + V+ F IGSVD FE ++
Sbjct: 145 NRVLTFQDFKTKYLEKGLVSKIYVVNKFLVEAELVNTKQVVS-----FTIGSVDIFEEQM 199
>AF31_MOUSE (Q920A7) AFG3-like protein 1 (EC 3.4.24.-)
Length = 663
Score = 45.4 bits (106), Expect = 8e-05
Identities = 37/96 (38%), Positives = 49/96 (50%), Gaps = 8/96 (8%)
Query: 23 GSFQEALKKLGTLMTLIGGLILSF--FYFRPFGKNQEISFQEFKIKVLEPGLVDHIVVSN 80
G F K +L L G+ F FYFR GK EI+++ F L GLVD + V N
Sbjct: 4 GEFPWDDKDFRSLAVLGAGVAAGFLYFYFRDPGK--EITWKHFVQYYLARGLVDRLEVVN 61
Query: 81 KELAKIY-VKNNESEVAKYKYYFKIGSVDSFERKLK 115
K+ ++ V SE +F IGSVD+FER L+
Sbjct: 62 KQFVRVIPVPGTTSE---RFVWFNIGSVDTFERNLE 94
>AF32_HUMAN (Q9Y4W6) AFG3-like protein 2 (EC 3.4.24.-)
(Paraplegin-like protein)
Length = 797
Score = 43.5 bits (101), Expect = 3e-04
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 47 FYFRPFGKNQEISFQEFKIKVLEPGLVDHIVVSNKELAKIYVKNNESEVAKYKYYFKIGS 106
FY +EI++++F L G+VD + V NK ++ ++ V +F IGS
Sbjct: 159 FYLLLKRSGREITWKDFVNNYLSKGVVDRLEVVNKRFVRVTFTPGKTPVDGQYVWFNIGS 218
Query: 107 VDSFERKLK 115
VD+FER L+
Sbjct: 219 VDTFERNLE 227
>Y088_METJA (Q57553) Hypothetical protein MJ0088
Length = 180
Score = 34.3 bits (77), Expect = 0.17
Identities = 25/90 (27%), Positives = 45/90 (49%), Gaps = 3/90 (3%)
Query: 44 LSFFYFRPFGKNQEISFQEFKIKVLEPGLVDHIVVSNKELAKIYVK-NNESEVAKYKYYF 102
LSF F P +E+ ++F K+ E ++D+ + E KI + E E + Y
Sbjct: 89 LSFLPFTPLPFYKELC-EKFMTKIPEKPIIDYKCIERIENNKIIFEFEGEEECLRCLMYL 147
Query: 103 KIGSVDSFERKLKKD*ALIIMILYVLLILL 132
K S+D + +K + +++ IL +LL +L
Sbjct: 148 KDSSIDESIKVIKSE-EMVVKILEILLYIL 176
>LR15_RAT (Q8R5M3) Leucine-rich repeat-containing protein 15
precursor (rLib)
Length = 578
Score = 31.2 bits (69), Expect = 1.5
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 49 FRPFGKNQEISFQEFKIKVLEPGLVDHIVVSNKELAKIYVKNN 91
F G QE++ QE +I L PGL +N+ L ++Y+ NN
Sbjct: 217 FDALGNLQELALQENQIGTLSPGLFH----NNRNLQRLYLSNN 255
>LR15_MOUSE (Q80X72) Leucine-rich repeat-containing protein 15
precursor
Length = 579
Score = 31.2 bits (69), Expect = 1.5
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 49 FRPFGKNQEISFQEFKIKVLEPGLVDHIVVSNKELAKIYVKNN 91
F G QE++ QE +I L PGL +N+ L ++Y+ NN
Sbjct: 217 FDALGNLQELALQENQIGTLSPGLFH----NNRNLQRLYLSNN 255
>CD97_MOUSE (Q9Z0M6) CD97 antigen precursor
Length = 818
Score = 31.2 bits (69), Expect = 1.5
Identities = 21/66 (31%), Positives = 32/66 (47%), Gaps = 1/66 (1%)
Query: 95 VAKYKYYFKIGSVDSFERKLKKD*ALIIMILYVLLILLKPTGFRCFSYYLHSCWLSEFSF 154
+ +K K ++ +KL+K L I + LL+L GF F + HS WLS + F
Sbjct: 697 ITVWKLTKKFSEINPNMKKLRKARVLTITAIAQLLVLGCTWGFGLFLFNPHSTWLS-YIF 755
Query: 155 IIRNVL 160
+ N L
Sbjct: 756 TLLNCL 761
>NU6M_LOCMI (Q36425) NADH-ubiquinone oxidoreductase chain 6 (EC
1.6.5.3)
Length = 173
Score = 29.6 bits (65), Expect = 4.3
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 18/109 (16%)
Query: 35 LMTLIGGLILSFFYFRPFGKNQEISFQEFKIKVLEPGLVDHIVV--------SNKELAKI 86
L+T +GG+++ F Y N + FKIK+ ++ ++++ +K ++
Sbjct: 55 LLTFLGGMMVLFIYITSIASN-----EMFKIKINSIIIIVYMMIILSTLMYKLDKTISTE 109
Query: 87 YVKNNESEVAKYKYYFKIGSVDSFERKLKKD*ALII---MILYVLLILL 132
+KN+E Y FK S KL + +II M++Y+ + LL
Sbjct: 110 MIKNSEIMNLNYSINFKEMSTSLV--KLYNNPTVIITIMMMIYLFITLL 156
>K052_HUMAN (P42285) Protein KIAA0052 (Fragment)
Length = 1046
Score = 29.6 bits (65), Expect = 4.3
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 57 EISFQEFKIKVLEPGLVDHIVVSNKELAKIYVKNNESEVAKYK 99
E SF +F+ PG+V+ + S ++ KI + N ES V YK
Sbjct: 590 EKSFYQFQHYRAIPGVVEKVKNSEEQYNKIVIPNEESVVIYYK 632
>PRSA_CLOTE (Q899I2) Foldase protein prsA precursor (EC 5.2.1.8)
Length = 339
Score = 28.5 bits (62), Expect = 9.6
Identities = 24/69 (34%), Positives = 32/69 (45%), Gaps = 6/69 (8%)
Query: 54 KNQEISFQ--EFKIKVLEPGLVDHIVVSNKELAKIYVKNNESEVAKYKYYFK----IGSV 107
KN EI Q +FK +VLE + + IV E K+ E EV K F G+
Sbjct: 78 KNAEIKDQLIQFKSQVLEQMIQEEIVFEKSEELKVDNAKVEKEVEKNLKNFMDQGFQGNK 137
Query: 108 DSFERKLKK 116
D ++ LKK
Sbjct: 138 DKYKEDLKK 146
>NPBL_CAEEL (Q95XZ5) Nipped-B-like protein pqn-85
(Prion-like-(Q/n-rich)-domain-bearing protein 85) (SCC2
homolog)
Length = 2203
Score = 28.5 bits (62), Expect = 9.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 61 QEFKIKVLEPGLVDHIVVSNKELAKIYVKN 90
Q K+KVLE L+D++V++N +Y N
Sbjct: 1179 QNDKLKVLETSLIDYLVITNSSDIIVYACN 1208
>KGUA_RICCN (Q92GC9) Guanylate kinase (EC 2.7.4.8) (GMP kinase)
Length = 229
Score = 28.5 bits (62), Expect = 9.6
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 65 IKVLEPGLVDHIVVSNKELAKIYVKNNESEVAKYKYYFKIGSVDSFERKLKKD*ALII 122
I+VLE L + N+E K+ ++ ++E++ Y + + D F+R LKK A+I+
Sbjct: 166 IEVLEQRLRNR-ATDNEEAIKLRMQLAQNEISHANEYDYVVTNDDFDRTLKKIHAIIV 222
>KDSA_RALSO (Q8Y0B7) 2-dehydro-3-deoxyphosphooctonate aldolase (EC
2.5.1.55) (Phospho-2-dehydro-3-deoxyoctonate aldolase)
(3-deoxy-D-manno-octulosonic acid 8-phosphate
synthetase) (KDO-8-phosphate synthetase) (KDO 8-P
synthase) (KDOPS)
Length = 284
Score = 28.5 bits (62), Expect = 9.6
Identities = 18/52 (34%), Positives = 24/52 (45%)
Query: 21 VVGSFQEALKKLGTLMTLIGGLILSFFYFRPFGKNQEISFQEFKIKVLEPGL 72
V+ S Q A+ GTL + G L + F Y F K S F+ +E GL
Sbjct: 22 VIESEQMAIDTAGTLKEITGALGIPFIYKSSFDKANRSSDASFRGLGMEEGL 73
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.337 0.148 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,684,752
Number of Sequences: 164201
Number of extensions: 736750
Number of successful extensions: 2739
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2728
Number of HSP's gapped (non-prelim): 14
length of query: 188
length of database: 59,974,054
effective HSP length: 104
effective length of query: 84
effective length of database: 42,897,150
effective search space: 3603360600
effective search space used: 3603360600
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 62 (28.5 bits)
Medicago: description of AC146759.1