BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146758.6 + phase: 0 /pseudo
(515 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YTX2_XENLA (P14381) Transposon TX1 hypothetical 149 kDa protein ... 134 4e-31
LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog 114 8e-25
POL2_MOUSE (P11369) Retrovirus-related Pol polyprotein [Contains... 106 1e-22
LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog 94 1e-18
PO22_POPJA (Q03274) Retrovirus-related Pol polyprotein from type... 66 2e-10
POLR_DROME (P16423) Retrovirus-related Pol polyprotein from type... 60 2e-08
PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type... 59 3e-08
YMH5_CAEEL (P34472) Hypothetical protein F58A4.5 in chromosome III 57 1e-07
PO11_SCICO (Q03277) Retrovirus-related Pol polyprotein from type... 52 4e-06
PO21_SCICO (Q03279) Retrovirus-related Pol polyprotein from type... 50 1e-05
Y2R2_DROME (P16425) Hypothetical 115 kDa protein in type I retro... 44 8e-04
RTJK_DROME (P21328) RNA-directed DNA polymerase from mobile elem... 41 0.008
PO23_POPJA (Q05118) Retrovirus-related Pol polyprotein from type... 37 0.12
RTJK_DROFU (P21329) RNA-directed DNA polymerase from mobile elem... 35 0.47
AI2M_YEAST (P03876) Putative COX1/OXI3 intron 2 protein 35 0.61
DYHC_NEUCR (P45443) Dynein heavy chain, cytosolic (DYHC) 33 1.8
LIVJ_ECOLI (P02917) Leu/Ile/Val-binding protein precursor (LIV-BP) 31 6.7
ALF4_ARATH (Q84VX3) Aberrant root formation protein 4 31 6.7
TPIC_ARATH (Q9SKP6) Triosephosphate isomerase, chloroplast precu... 31 8.8
ERC1_MOUSE (Q99MI1) ERC protein 1 (Rab6-interacting protein 2) (... 31 8.8
>YTX2_XENLA (P14381) Transposon TX1 hypothetical 149 kDa protein
(ORF 2)
Length = 1308
Score = 134 bits (338), Expect = 4e-31
Identities = 97/351 (27%), Positives = 170/351 (47%), Gaps = 11/351 (3%)
Query: 168 LLGKISDLKERLATLDEKGESMLLTDEECAEIHGVSSDILSLSRLNTSICWQQSRIQWLR 227
L G++ DL++RL+ +++ + + A + ++ + + +SR+Q L
Sbjct: 315 LNGEVLDLEQRLSGSEDQALQCEYLERKEA--------LRNMEQRQARGAFVRSRMQLLC 366
Query: 228 EGDANSKFFHSVLASRRRRNSL-CTIVVDGVVVEGVHPIREAVFCHFENHFRSVNVERPS 286
+ D S+FF+++ + R + C DG +E IR+ ++N F + +
Sbjct: 367 DMDRGSRFFYALEKKKGNRKQITCLFAEDGTPLEDPEAIRDRARSFYQNLFSPDPISPDA 426
Query: 287 LTNLQF*SLSVAEG--VGLIKPFSIDEVKAAVWDCDSYKSPGPDGINFGFIKEFWLDLKD 344
L V+E L P ++DE+ A+ KSPG DG+ F + FW L
Sbjct: 427 CEELWDGLPVVSERRKERLETPITLDELSQALRLMPHNKSPGLDGLTIEFFQFFWDTLGP 486
Query: 345 EIFRFVSEFHRNGKLSKGINSTFIALIPKVDNPQRLNDFRPISLVGSLYKILAKLLANRL 404
+ R ++E + G+L ++L+PK + + + ++RP+SL+ + YKI+AK ++ RL
Sbjct: 487 DFHRVLTEAFKKGELPLSCRRAVLSLLPKKGDLRLIKNWRPVSLLSTDYKIVAKAISLRL 546
Query: 405 RVVIGSVISDAQSAFVKNRQILDGILIANEAVDEARKLKKDLLLFKVDFEKAYDSVDWGY 464
+ V+ VI QS V R I D + + + + AR+ L +D EKA+D VD Y
Sbjct: 547 KSVLAEVIHPDQSYTVPGRTIFDNVFLIRDLLHFARRTGLSLAFLSLDQEKAFDRVDHQY 606
Query: 465 LDSVMGRMSFPVLWRKWIKVCVSTATASVLVNGSPTDEFPFRRGLRQGDPL 515
L + SF + ++K ++A V +N S T F RG+RQG PL
Sbjct: 607 LIGTLQAYSFGPQFVGYLKTMYASAECLVKINWSLTAPLAFGRGVRQGCPL 657
>LIN1_NYCCO (P08548) LINE-1 reverse transcriptase homolog
Length = 1260
Score = 114 bits (284), Expect = 8e-25
Identities = 99/377 (26%), Positives = 171/377 (45%), Gaps = 13/377 (3%)
Query: 145 VLKEKFKLLKISLKEWHASHS*NLLGKISDLKERLATLDEKGESMLLTDEECAEIHGVSS 204
VL+ KF L+ LK+ NL+G + L++ + + +T AE++ + +
Sbjct: 293 VLRGKFIALQAFLKKTEREEVNNLMGHLKQLEKEEHSNPKPSRRKEITKIR-AELNEIEN 351
Query: 205 DILSLSRLNTSICWQQSRIQWLREGDAN---SKFFHSVLASRRRRNSLCTIVVDGVVVEG 261
+ + ++N S W +I + + AN K S+++S R N I D ++
Sbjct: 352 KRI-IQQINKSKSWFFEKINKIDKPLANLTRKKRVKSLISSIRNGND--EITTDPSEIQK 408
Query: 262 V-HPIREAVFCHFENHFRSVNVERPSLTNLQF*SLSVAEGVGLIKPFSIDEVKAAVWDCD 320
+ + + ++ H + + ++ L LS E L +P S E+ + + +
Sbjct: 409 ILNEYYKKLYSHKYENLKEID---QYLEACHLPRLSQKEVEMLNRPISSSEIASTIQNLP 465
Query: 321 SYKSPGPDGINFGFIKEFWLDLKDEIFRFVSEFHRNGKLSKGINSTFIALIPKVD-NPQR 379
KSPGPDG F + F +L + + G L I LIPK +P R
Sbjct: 466 KKKSPGPDGFTSEFYQTFKEELVPILLNLFQNIEKEGILPNTFYEANITLIPKPGKDPTR 525
Query: 380 LNDFRPISLVGSLYKILAKLLANRLRVVIGSVISDAQSAFVKNRQILDGILIANEAVDEA 439
++RPISL+ KIL K+L NR++ I +I Q F+ Q I + +
Sbjct: 526 KENYRPISLMNIDAKILNKILTNRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINVIQHI 585
Query: 440 RKLK-KDLLLFKVDFEKAYDSVDWGYLDSVMGRMSFPVLWRKWIKVCVSTATASVLVNGS 498
KLK KD ++ +D EKA+D++ ++ + ++ + K I+ S TA++++NG
Sbjct: 586 NKLKNKDHMILSIDAEKAFDNIQHPFMIRTLKKIGIEGTFLKLIEAIYSKPTANIILNGV 645
Query: 499 PTDEFPFRRGLRQGDPL 515
FP R G RQG PL
Sbjct: 646 KLKSFPLRSGTRQGCPL 662
>POL2_MOUSE (P11369) Retrovirus-related Pol polyprotein [Contains:
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1300
Score = 106 bits (265), Expect = 1e-22
Identities = 95/376 (25%), Positives = 165/376 (43%), Gaps = 13/376 (3%)
Query: 146 LKEKFKLLKISLKEWHASHS*NLLGKISDLKERLATLDEKGESMLLTDEECAEIHGVSSD 205
L+ K L S K+ +H+ +L + L+++ A ++ +E ++ G +
Sbjct: 321 LRGKLIALSASKKKRETAHTSSLTTHLKALEKKEANSPKRSRR-----QEIIKLRGEINQ 375
Query: 206 I---LSLSRLNTSICWQQSRIQWLREGDAN-SKFFHSVLASRRRRNSLCTIVVDGVVVEG 261
+ ++ R+N + W +I + + A +K + + RN I D ++
Sbjct: 376 VETRRTIQRINQTRSWFFEKINKIDKPLARLTKGHRDKILINKIRNEKGDITTDPEEIQN 435
Query: 262 VHPIREAVFCHFENHFRSVNVERPSLTNLQF*SLSVAEGVGLIKPFSIDEVKAAVWDCDS 321
IR + +++ L Q L+ + L P S E++A + +
Sbjct: 436 T--IRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVINSLPT 493
Query: 322 YKSPGPDGINFGFIKEFWLDLKDEIFRFVSEFHRNGKLSKGINSTFIALIPKVD-NPQRL 380
KSPGPDG + F + F DL + + + G L I LIPK +P ++
Sbjct: 494 KKSPGPDGFSAEFYQTFKEDLIPILHKLFHKIEVEGTLPNSFYEATITLIPKPQKDPTKI 553
Query: 381 NDFRPISLVGSLYKILAKLLANRLRVVIGSVISDAQSAFVKNRQILDGILIANEAVDEAR 440
+FRPISL+ KIL K+LANR++ I ++I Q F+ Q I + +
Sbjct: 554 ENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHYIN 613
Query: 441 KLK-KDLLLFKVDFEKAYDSVDWGYLDSVMGRMSFPVLWRKWIKVCVSTATASVLVNGSP 499
KLK K+ ++ +D EKA+D + ++ V+ R + IK S A++ VNG
Sbjct: 614 KLKDKNHMIISLDAEKAFDKIQHPFMIKVLERSGIQGPYLNMIKAIYSKPVANIKVNGEK 673
Query: 500 TDEFPFRRGLRQGDPL 515
+ P + G RQG PL
Sbjct: 674 LEAIPLKSGTRQGCPL 689
>LIN1_HUMAN (P08547) LINE-1 reverse transcriptase homolog
Length = 1259
Score = 93.6 bits (231), Expect = 1e-18
Identities = 120/539 (22%), Positives = 218/539 (40%), Gaps = 48/539 (8%)
Query: 8 VCGDFNAIRSREERRSVSVGQVASDFSHFNSFIDNNVLVD----LPLGGRNFTWFKGDGK 63
+ GDFN S +R + ++ D NS + L+D L +T+F
Sbjct: 141 IMGDFNTPLSTLDRSTRQ--KINKDIQELNSALHQADLIDIYRTLHPKSTEYTFFSAPHH 198
Query: 64 SMSRLDRFLLSEDWCLVWPNCLQIAQMRG-LSDHCPLILSVAEENWGPRPSRMLKC---- 118
+ S+ D L S+ + C + + LSDH + L + + S K
Sbjct: 199 TYSKTDHILGSKT---LLSKCKRTEIITNCLSDHSAIKLELRIKKLTQNHSTTWKLNNLL 255
Query: 119 ----WT------DIPGYRQFVSNKWKSFQVSGW--GGYVLKEKFKLLKISLKEWHASHS* 166
W +I + + NK ++Q + W V + KF L ++ S
Sbjct: 256 LNDYWVHNEMKAEIKKFFETNENKDTTYQ-NLWDTAKAVCRGKFIALNAHKRKQERSKID 314
Query: 167 NLLGKISDLKERLATLDEKGESMLLTDEECAEIHGVSSDI---LSLSRLNTSICWQQSRI 223
L+ ++ +L+++ E+ S +E +I +I +L ++N S W +I
Sbjct: 315 TLISQLKELEKQ-----EQTNSKASRRQEIIKIRAELKEIETQKTLQKINESRSWFFEKI 369
Query: 224 QWLREGDANSKFFHSVLASRRRRNSLCTIVVDGVVV-----EGVHPIREAVFCHFENHFR 278
+ A ++ +R +N + TI D + E IRE + N
Sbjct: 370 NKIDRPLAR------LIKKKREKNQIDTIKNDRGDITTDPTEIQTTIREYYKHLYANKLE 423
Query: 279 SVNVERPSLTNLQF*SLSVAEGVGLIKPFSIDEVKAAVWDCDSYKSPGPDGINFGFIKEF 338
++ L L+ E L +P + E++A + + KSPGP+G F + +
Sbjct: 424 NLEEMDKFLDTYTLPRLNQEEVESLNRPITSSEIEAIINSLPNKKSPGPEGFTAEFYQRY 483
Query: 339 WLDLKDEIFRFVSEFHRNGKLSKGINSTFIALIPKVD-NPQRLNDFRPISLVGSLYKILA 397
+L + + + G L I LIPK + + +FRPISL+ KIL
Sbjct: 484 KEELVPFLLKLFQSIEKEGILPNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILN 543
Query: 398 KLLANRLRVVIGSVISDAQSAFVKNRQILDGILIANEAVDEARKLKK-DLLLFKVDFEKA 456
K+LAN+++ I +I Q F+ Q I + + + K + ++ +D EKA
Sbjct: 544 KILANQIQQHIKKLIHHDQVGFIPAMQGWFNIRKSINIIQHINRTKDTNHMIISIDAEKA 603
Query: 457 YDSVDWGYLDSVMGRMSFPVLWRKWIKVCVSTATASVLVNGSPTDEFPFRRGLRQGDPL 515
+D + ++ + ++ + K I+ TA++++NG + P + G RQG PL
Sbjct: 604 FDKIQQPFMLKPLNKLGIDGTYLKIIRAIYDKPTANIILNGQKLEAPPLKTGTRQGCPL 662
>PO22_POPJA (Q03274) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 711
Score = 65.9 bits (159), Expect = 2e-10
Identities = 53/214 (24%), Positives = 99/214 (45%), Gaps = 13/214 (6%)
Query: 305 KPFSIDEVKAAV--WDCDSYKSPGPDGINFGFIKEFWLDLKDEIFRFVSEFHRNGKLSKG 362
+P + +E++ A+ W +PG DG+ I L FV G +
Sbjct: 4 RPIAREEIQCAIKGW---KPSAPGSDGLTVQAITRTRLPRN-----FVQLHLLRGHVPTP 55
Query: 363 INSTFIALIPKVDNPQRLNDFRPISLVGSLYKILAKLLANRLRVVIGSVISDAQSAFVKN 422
+ LIPK + + +++RPI++ +L ++L ++LA RL + + AQ + +
Sbjct: 56 WTAMRTTLIPKDGDLENPSNWRPITIASALQRLLHRILAKRLEAAV--ELHPAQKGYARI 113
Query: 423 RQILDGILIANEAVDEARKLKKDLLLFKVDFEKAYDSVDWGYLDSVMGRMSFPVLWRKWI 482
L L+ + + R+ +K + +D KA+D+V + + R+ +I
Sbjct: 114 DGTLVNSLLLDTYISSRREQRKTYNVVSLDVRKAFDTVSHSSICRALQRLGIDEGTSNYI 173
Query: 483 KVCVSTATASVLVN-GSPTDEFPFRRGLRQGDPL 515
+S +T ++ V GS T + RRG++QGDPL
Sbjct: 174 TGSLSDSTTTIRVGPGSQTRKICIRRGVKQGDPL 207
>POLR_DROME (P16423) Retrovirus-related Pol polyprotein from type II
retrotransposable element R2DM [Contains: Protease (EC
3.4.23.-); Reverse transcriptase (EC 2.7.7.49);
Endonuclease]
Length = 1057
Score = 59.7 bits (143), Expect = 2e-08
Identities = 51/192 (26%), Positives = 81/192 (41%), Gaps = 5/192 (2%)
Query: 324 SPGPDGINFGFIKEFWLDLKDEIFRFVSEFHRNGKLSKGINSTFIALIPKVDNPQRLNDF 383
SPGPDGI +E + + R ++ G L I IPK +R DF
Sbjct: 359 SPGPDGITPKSAREVPSGI---MLRIMNLILWCGNLPHSIRLARTVFIPKTVTAKRPQDF 415
Query: 384 RPISLVGSLYKILAKLLANRLRVVIGSVISDAQSAFVKNRQILDGILIANEAVDEARKLK 443
RPIS+ L + L +LA RL I Q F+ D I + + + K
Sbjct: 416 RPISVPSVLVRQLNAILATRLNSSIN--WDPRQRGFLPTDGCADNATIVDLVLRHSHKHF 473
Query: 444 KDLLLFKVDFEKAYDSVDWGYLDSVMGRMSFPVLWRKWIKVCVSTATASVLVNGSPTDEF 503
+ + +D KA+DS+ + + P + +++ S+ +G ++EF
Sbjct: 474 RSCYIANLDVSKAFDSLSHASIYDTLRAYGAPKGFVDYVQNTYEGGGTSLNGDGWSSEEF 533
Query: 504 PFRRGLRQGDPL 515
RG++QGDPL
Sbjct: 534 VPARGVKQGDPL 545
>PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 1025
Score = 58.9 bits (141), Expect = 3e-08
Identities = 52/213 (24%), Positives = 91/213 (42%), Gaps = 8/213 (3%)
Query: 303 LIKPFSIDEVKAAVWDCDSYKSPGPDGINFGFIKEFWLDLKDEIFRFVSEFHRNGKLSKG 362
L +P S DE+K + + GPDG+ W + + I + +G+ +
Sbjct: 315 LWRPISNDEIKEV--EACKRTAAGPDGMT----TTAWNSIDECIKSLFNMIMYHGQCPRR 368
Query: 363 INSTFIALIPKVDNPQRLNDFRPISLVGSLYKILAKLLANRLRVVIGSVISDAQSAFVKN 422
+ LIPK FRP+S+ + ++LANR+ ++ Q AF+
Sbjct: 369 YLDSRTVLIPKEPGTMDPACFRPLSIASVALRHFHRILANRIGE--HGLLDTRQRAFIVA 426
Query: 423 RQILDGILIANEAVDEARKLKKDLLLFKVDFEKAYDSVDWGYLDSVMGRMSFPVLWRKWI 482
+ + + + + EAR K L + +D +KA+DSV+ + + R P+ R +I
Sbjct: 427 DGVAENTSLLSAMIKEARMKIKGLYIAILDVKKAFDSVEHRSILDALRRKKLPLEMRNYI 486
Query: 483 KVCVSTATASVLVNGSPTDEFPFRRGLRQGDPL 515
+ + V + RG+RQGDPL
Sbjct: 487 MWVYRNSKTRLEVVKTKGRWIRPARGVRQGDPL 519
>YMH5_CAEEL (P34472) Hypothetical protein F58A4.5 in chromosome III
Length = 1222
Score = 57.0 bits (136), Expect = 1e-07
Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 1/143 (0%)
Query: 371 IPKVDNPQRLNDFRPISLVGSLYKILAKLLANRLRVVIGSVISDAQSAFVKNRQILDGIL 430
IPK NP +++RPISL +I+ +++ +R+R ++S Q F+ R ++
Sbjct: 673 IPKKGNPSSPSNYRPISLTDPFARIMERIICSRIRSEYSHLLSPHQHGFLNFRSCPSSLV 732
Query: 431 IANEAVDEARKLKKDLLLFKVDFEKAYDSVDWGYLDSVMGRMSFPVLWRKWIKVCVSTAT 490
+ K +K L + DF KA+D V L + L W K + T
Sbjct: 733 RSISLYHSILKNEKSLDILFFDFAKAFDKVSHPILLKKLALFGLDKLTCSWFKEFLHLRT 792
Query: 491 ASVLVNG-SPTDEFPFRRGLRQG 512
SV +N ++ +P G+ QG
Sbjct: 793 FSVKINKFVSSNAYPISSGVPQG 815
>PO11_SCICO (Q03277) Retrovirus-related Pol polyprotein from type I
retrotransposable element R1 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 1004
Score = 52.0 bits (123), Expect = 4e-06
Identities = 60/254 (23%), Positives = 107/254 (41%), Gaps = 26/254 (10%)
Query: 217 CWQQSRIQWLREGDANSKFFHSVLASRRRRNSLCTIVVDGVVVEGVHPIREAVFCHFENH 276
CWQ+ E F + RR+ +C++ VDGV + A+ N
Sbjct: 326 CWQEFVASESNENPWGRVF--KLCRGRRKPVDVCSVKVDGVYTDTWEGSVNAMM----NV 379
Query: 277 FRSVNVERPS-LTNLQF*SLSVAEGVGLIKPFSIDEVKAAVWDCDSYKSPGPDGINFGFI 335
F +++ S + L+ A L +DEV +V C KSPGPDGI +
Sbjct: 380 FFPASIDDASEIDRLK------AIARPLPPDLEMDEVSDSVRRCKVRKSPGPDGIVGEMV 433
Query: 336 KEFWLDLKDEIF------RFVSEFHRNGKLSKGINSTFIALIPKVDNPQRLNDFRPISLV 389
+ W + + +F S F + K++ + + L+ ++ + +RPI L+
Sbjct: 434 RAVWGAIPEYMFCLYKQCLLESYFPQKWKIASLV--ILLKLLDRIRSDP--GSYRPICLL 489
Query: 390 GSLYKILAKLLANRLRVVIGSV-ISDAQSAFVKNRQILDGILIANEAVDEARKLKKDLLL 448
+L K+L ++ RL + V +S Q AF + D V+ + K ++
Sbjct: 490 DNLGKVLEGIMVKRLDQKLMDVEVSPYQFAFTYGKSTEDAWRCVQRHVECSE--MKYVIG 547
Query: 449 FKVDFEKAYDSVDW 462
+DF+ A+D++ W
Sbjct: 548 LNIDFQGAFDNLGW 561
>PO21_SCICO (Q03279) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 869
Score = 50.4 bits (119), Expect = 1e-05
Identities = 50/211 (23%), Positives = 88/211 (41%), Gaps = 10/211 (4%)
Query: 306 PFSIDEVKAAVWDCDSYKSPGPDGINFGFIKEFWLDLKDEIFRFVSE-FHRNGKLSKGIN 364
P S+ E+K+A + K GPDG+ W L D R + F G++ I
Sbjct: 158 PVSLIEIKSA--RASNEKGAGPDGVT----PRSWNALDDRYKRLLYNIFVFYGRVPSPIK 211
Query: 365 STFIALIPKVDNPQRLNDFRPISLVGSLYKILAKLLANRLRVVIGSVISDAQSAFVKNRQ 424
+ PK++ FRP+S+ + + K+LA R V + Q+A++
Sbjct: 212 GSRTVFTPKIEGGPDPGVFRPLSICSVILREFNKILARRF--VSCYTYDERQTAYLPIDG 269
Query: 425 ILDGILIANEAVDEARKLKKDLLLFKVDFEKAYDSVDWGYLDSVMGRMSFPVLWRKWIKV 484
+ + + + EA++L+K+L + +D KA++SV L + P +I
Sbjct: 270 VCINVSMLTAIIAEAKRLRKELHIAILDLVKAFNSVYHSALIDAITEAGCPPGVVDYIAD 329
Query: 485 CVSTATASVLVNGSPTDEFPFRRGLRQGDPL 515
+ + G + G+ QGDPL
Sbjct: 330 MYNNVITEMQFEGK-CELASILAGVYQGDPL 359
>Y2R2_DROME (P16425) Hypothetical 115 kDa protein in type I
retrotransposable element R1DM (ORF 2)
Length = 1021
Score = 44.3 bits (103), Expect = 8e-04
Identities = 51/206 (24%), Positives = 84/206 (40%), Gaps = 12/206 (5%)
Query: 311 EVKAAVWDCDSYKSPGPDGINFGFIKEFWLDLKDEIFRFVSEFHRNGKLSKGINSTFIAL 370
EV V S +SPG DGIN K W + + + S R G +
Sbjct: 438 EVDTCVARLKSRRSPGLDGINGTICKAVWRAIPEHLASLFSRCIRLGYFPAEWKCPRVVS 497
Query: 371 IPKVDNPQRL--NDFRPISLVGSLYKILAKLLANRLRVVIGSVISDAQSAFVKNRQILDG 428
+ K + + + +R I L+ K+L ++ NR+R V+ Q F + R + D
Sbjct: 498 LLKGPDKDKCEPSSYRGICLLPVFGKVLEAIMVNRVREVLPEGCR-WQFGFRQGRCVEDA 556
Query: 429 ILIANEAVDEARKLKKDLLLFKVDFEKAYDSVDWGYLDSVMGRMSFPV--LWRKWIKVCV 486
+V + +L VDF+ A+D+V+W S + + LW+ +
Sbjct: 557 WRHVKSSV--GASAAQYVLGTFVDFKGAFDNVEWSAALSRLADLGCREMGLWQSFF---- 610
Query: 487 STATASVLVNGSPTDEFPFRRGLRQG 512
+ +V+ + S T E P RG QG
Sbjct: 611 -SGRRAVIRSSSGTVEVPVTRGCPQG 635
>RTJK_DROME (P21328) RNA-directed DNA polymerase from mobile element
jockey (EC 2.7.7.49) (Reverse transcriptase)
Length = 916
Score = 40.8 bits (94), Expect = 0.008
Identities = 53/215 (24%), Positives = 90/215 (41%), Gaps = 12/215 (5%)
Query: 308 SIDEVKAAVWDCDSYKSPGPDGINFGFIKEFWLDLKDEIFRFVSEFHRN----GKLSKGI 363
+++EVK + K+PG D ++ I+ L D+ +F++ + G K
Sbjct: 439 TLEEVKNLIAKLPLKKAPGEDLLDNRTIRL----LPDQALQFLALIFNSVLDVGYFPKAW 494
Query: 364 NSTFIALIPKVDN-PQRLNDFRPISLVGSLYKILAKLLANRLRVV--IGSVISDAQSAFV 420
S I +I K P ++ +RP SL+ SL KI+ +L+ NRL + I Q F
Sbjct: 495 KSASIIMIHKTGKTPTDVDSYRPTSLLPSLGKIMERLILNRLLTCKDVTKAIPKFQFGFR 554
Query: 421 KNRQILDGILIANEAVDEARKLKKDLLLFKVDFEKAYDSVDWGYLDSVMGRMSFPVLWRK 480
+ + EA + K+ + +D ++A+D V W + FP
Sbjct: 555 LQHGTPEQLHRVVNFALEAMENKEYAVGAFLDIQQAFDRV-WHPGLLYKAKRLFPPQLYL 613
Query: 481 WIKVCVSTATASVLVNGSPTDEFPFRRGLRQGDPL 515
+K + T V V+G + P G+ QG L
Sbjct: 614 VVKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVL 648
>PO23_POPJA (Q05118) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 606
Score = 37.0 bits (84), Expect = 0.12
Identities = 24/87 (27%), Positives = 43/87 (48%), Gaps = 1/87 (1%)
Query: 430 LIANEAVDEARKLK-KDLLLFKVDFEKAYDSVDWGYLDSVMGRMSFPVLWRKWIKVCVST 488
+I E + R+LK K + +D KA+D+V + M + +I ++
Sbjct: 6 IIMLEHYIKLRRLKGKTYNVVSLDIRKAFDTVSHPAILRAMRAFGIDDGMQDFIMSTITD 65
Query: 489 ATASVLVNGSPTDEFPFRRGLRQGDPL 515
A +++V G T++ R G++QGDPL
Sbjct: 66 AYTNIVVGGRTTNKIYIRNGVKQGDPL 92
>RTJK_DROFU (P21329) RNA-directed DNA polymerase from mobile element
jockey (EC 2.7.7.49) (Reverse transcriptase)
Length = 916
Score = 35.0 bits (79), Expect = 0.47
Identities = 37/139 (26%), Positives = 64/139 (45%), Gaps = 10/139 (7%)
Query: 272 HFENHFRSVNVERPSLTNLQF*SLSVAEGVGL-IKPFSIDEVKAAVWDCDSYKSPGPDGI 330
H E F+++ S + + SL + L P +++EVK V K+PG D +
Sbjct: 402 HLEQRFKALAFAPESHSLMVAESLQTPFQMALPADPVTLEEVKELVSKLKPKKAPGEDLL 461
Query: 331 NFGFIKEFWLDLKDEIFRFV----SEFHRNGKLSKGINSTFIALIPKVDN-PQRLNDFRP 385
+ I+ L D+ ++ + R G K + I +I K P ++ +RP
Sbjct: 462 DNRTIRL----LPDQALLYLVLIFNSILRVGYFPKARPTASIIMILKPGKQPLDVDSYRP 517
Query: 386 ISLVGSLYKILAKLLANRL 404
SL+ SL K+L +L+ NR+
Sbjct: 518 TSLLPSLGKMLERLILNRI 536
>AI2M_YEAST (P03876) Putative COX1/OXI3 intron 2 protein
Length = 789
Score = 34.7 bits (78), Expect = 0.61
Identities = 28/142 (19%), Positives = 54/142 (37%), Gaps = 25/142 (17%)
Query: 328 DGINFGFIKEFWLDLKDEIFRFVSEFHRNGKLSKGINSTFIALIPKVDNPQRLNDFRPIS 387
DGIN ++ + D+ +F+F + + +V+ P+ FRP+S
Sbjct: 254 DGINISYLNKLSKDINTNMFKF-------------------SPVRRVEIPKTSGGFRPLS 294
Query: 388 LVGSLYKILAKLLANRLRVVIGSVISDAQSAFVKNRQILDGILIANEAVDEARKLKKDLL 447
+ KI+ + + L ++ + S F N L I+ +
Sbjct: 295 VGNPREKIVQESMRMMLEIIYNNSFSYYSHGFRPNLSCLTAIIQCKNYMQYCN------W 348
Query: 448 LFKVDFEKAYDSVDWGYLDSVM 469
KVD K +D++ L +V+
Sbjct: 349 FIKVDLNKCFDTIPHNMLINVL 370
>DYHC_NEUCR (P45443) Dynein heavy chain, cytosolic (DYHC)
Length = 4367
Score = 33.1 bits (74), Expect = 1.8
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 16/123 (13%)
Query: 337 EFWLDLKDEIFRFVSEFHRNGKLS----------KGINSTFIALIPKVDNPQRLNDFRPI 386
+ W+D++ + FH N + + INS F+A++ KV + D I
Sbjct: 1579 DIWIDVQRQWVYLEGVFHGNADIKHLLPIESSRFQNINSEFLAVMKKVYKQPNVLDVLNI 1638
Query: 387 SLVGSLYKILAKLLANRLRVVIGSV-----ISDAQSAFVKNRQILDGILIANEAVDEARK 441
V + LA+LL N+++ +G +S + FV + +L+ I +N+ + A+
Sbjct: 1639 PNVQKSLERLAELL-NKIQKALGEYLEKERVSFPRFYFVGDEDLLEMIGNSNDTMRIAKH 1697
Query: 442 LKK 444
KK
Sbjct: 1698 FKK 1700
>LIVJ_ECOLI (P02917) Leu/Ile/Val-binding protein precursor (LIV-BP)
Length = 367
Score = 31.2 bits (69), Expect = 6.7
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 226 LREGDANSKFFHSVLASRRRRNSLCTIV----VDGVVVEGVHP-----IREAVFCHFENH 276
L++G+AN FF + A + ++L + +D V G HP +R+A +
Sbjct: 185 LKKGNANVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQ 244
Query: 277 FRS-VNVERPSLTNLQF*SLSVAEGVGLIKPFSIDEVKA--AVWDCDSYKSPGPDG 329
F V SL+N+ S AEG+ + KP + D+V A + D K P G
Sbjct: 245 FMGPEGVANVSLSNIAGES---AEGLLVTKPKNYDQVPANKPIVDAIKAKKQDPSG 297
>ALF4_ARATH (Q84VX3) Aberrant root formation protein 4
Length = 626
Score = 31.2 bits (69), Expect = 6.7
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 375 DNPQRLNDFRPISLVGSLYKILAKL---LANRLRVVIGSVISDAQSAFVKNRQILDGILI 431
D+ + + F ISL SL I AK+ +A V+GSV+ + Q+ VK Q +
Sbjct: 316 DDDEFITSFPDISLGASLLFICAKISHEVAEAANAVLGSVVDELQNNPVKRWQAYGMLKY 375
Query: 432 ANEAVDEARKLKKDLLLFKVDFEKAYDS 459
+ D + K+ + F +D K S
Sbjct: 376 ILSSGDLLWEFKRHAIEFLLDITKGVTS 403
>TPIC_ARATH (Q9SKP6) Triosephosphate isomerase, chloroplast
precursor (EC 5.3.1.1) (TIM) (Triose-phosphate
isomerase)
Length = 315
Score = 30.8 bits (68), Expect = 8.8
Identities = 15/64 (23%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 373 KVDNPQRLNDFRPISLVGSLYKILAKLLANRLRVVIGSVISDAQSAFVKNRQILDGILIA 432
KV +PQ+ + +++ G L K +++ +A++ R++ G ++ SA + + +DG L+
Sbjct: 234 KVASPQQAQEVH-VAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVG 292
Query: 433 NEAV 436
++
Sbjct: 293 GASL 296
>ERC1_MOUSE (Q99MI1) ERC protein 1 (Rab6-interacting protein 2)
(Rab6IP2) (CAZ-associated structural protein 2) (CAST2)
Length = 1120
Score = 30.8 bits (68), Expect = 8.8
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 14/107 (13%)
Query: 159 EWHASHS*NLLGKISDLKERLATLDEKGESMLLTDEECAEIHGVSSDI----LSLSRLNT 214
E + SHS + K+ LKE L++ D +GE + G+ S+I LSR +T
Sbjct: 427 EVYRSHSKFMKNKVEQLKEELSSKDAQGEELK------KRAAGLQSEIGQVKQELSRKDT 480
Query: 215 SICWQQSRIQWLREGDANSKFFHSV----LASRRRRNSLCTIVVDGV 257
+ Q++++ L ++SK V L ++ +R ++ VD +
Sbjct: 481 ELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVDAL 527
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.324 0.140 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,209,360
Number of Sequences: 164201
Number of extensions: 2520031
Number of successful extensions: 7177
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 7142
Number of HSP's gapped (non-prelim): 25
length of query: 515
length of database: 59,974,054
effective HSP length: 115
effective length of query: 400
effective length of database: 41,090,939
effective search space: 16436375600
effective search space used: 16436375600
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 68 (30.8 bits)
Medicago: description of AC146758.6