BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146758.11 + phase: 0 /pseudo
(1309 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GAG_FIVPE (P16087) Gag polyprotein [Contains: Core protein p15; ... 47 4e-04
GAG_FIVSD (P19027) Gag polyprotein [Contains: Core protein p15; ... 46 8e-04
GAG_FIVT2 (P31821) Gag polyprotein [Contains: Core protein p15; ... 45 0.002
GAG_FIVWO (Q05313) Gag polyprotein [Contains: Core protein p15; ... 44 0.002
GAG_VILV2 (P23425) Gag polyprotein [Contains: Core protein p16; ... 44 0.004
GAG_VILV1 (P23424) Gag polyprotein [Contains: Core protein p16; ... 44 0.004
GAG_VILV (P03352) Gag polyprotein [Contains: Core protein p16; C... 44 0.004
GAG_HV1MA (P04594) Gag polyprotein [Contains: Core protein p17 (... 44 0.004
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 43 0.005
CNBP_RAT (P62634) Cellular nucleic acid binding protein (CNBP) (... 42 0.008
CNBP_MOUSE (P53996) Cellular nucleic acid binding protein (CNBP)... 42 0.008
CNBP_HUMAN (P62633) Cellular nucleic acid binding protein (CNBP)... 42 0.008
CNBP_CHICK (O42395) Cellular nucleic acid binding protein (CNBP) 42 0.008
GAG_HV1JR (P20873) Gag polyprotein [Contains: Core protein p17 (... 42 0.014
GAG_HV1B5 (P04593) Gag polyprotein [Contains: Core protein p17 (... 41 0.024
GIS2_YEAST (P53849) Zinc-finger protein GIS2 40 0.032
GAG_VILVK (P35955) Gag polyprotein [Contains: Core protein p16; ... 40 0.032
GAG_HV1PV (P03350) Gag polyprotein [Contains: Core protein p17 (... 40 0.032
GAG_HV1B1 (P03347) Gag polyprotein [Contains: Core protein p17 (... 40 0.032
GAG_HV1LW (Q70622) Gag polyprotein [Contains: Core protein p17 (... 40 0.042
>GAG_FIVPE (P16087) Gag polyprotein [Contains: Core protein p15;
Major core protein p24; Nucleic acid binding protein
p10]
Length = 450
Score = 46.6 bits (109), Expect = 4e-04
Identities = 27/83 (32%), Positives = 44/83 (52%), Gaps = 8/83 (9%)
Query: 189 DTCVSELLREEQRLLTQGAMSRDALIFESTTVAYAAQRRGKGHDMQQVQCFSCKQFGHIA 248
++ + E LR Q + + G + L+ E+ T Q +G G CF+CK+ GH+A
Sbjct: 335 ESTLEEKLRACQEIGSPGYKMQ--LLAEALTKVQVVQSKGSGP-----VCFNCKKPGHLA 387
Query: 249 RSCSK-KFCNYCKQRGHIITECY 270
R C + K CN C + GH+ +C+
Sbjct: 388 RQCREVKKCNKCGKPGHLAAKCW 410
>GAG_FIVSD (P19027) Gag polyprotein [Contains: Core protein p15;
Major core protein p24; Nucleic acid binding protein
p10]
Length = 450
Score = 45.8 bits (107), Expect = 8e-04
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 189 DTCVSELLREEQRLLTQGAMSRDALIFESTTVAYAAQRRGKGHDMQQVQCFSCKQFGHIA 248
++ + E LR Q + + G + L+ E+ T Q +G G CF+CK+ GH+A
Sbjct: 335 ESTLEEKLRACQEIGSPGYKMQ--LLAEALTKVQVVQSKGSGP-----VCFNCKKPGHLA 387
Query: 249 RSC-SKKFCNYCKQRGHIITECY 270
R C K CN C + GH+ +C+
Sbjct: 388 RQCRDVKKCNKCGKPGHLAAKCW 410
>GAG_FIVT2 (P31821) Gag polyprotein [Contains: Core protein p15;
Major core protein p24; Nucleic acid binding protein
p10]
Length = 449
Score = 44.7 bits (104), Expect = 0.002
Identities = 26/83 (31%), Positives = 44/83 (52%), Gaps = 8/83 (9%)
Query: 189 DTCVSELLREEQRLLTQGAMSRDALIFESTTVAYAAQRRGKGHDMQQVQCFSCKQFGHIA 248
++ + E LR Q + + G + L+ E+ T Q +G ++ CF+CK+ GH+A
Sbjct: 335 ESTLEEKLRACQEVGSPGYKMQ--LLAEALTRVQTVQTKGP-----RLVCFNCKKPGHLA 387
Query: 249 RSCSK-KFCNYCKQRGHIITECY 270
R C + K CN C + GH+ C+
Sbjct: 388 RQCKEAKRCNNCGKPGHLAANCW 410
>GAG_FIVWO (Q05313) Gag polyprotein [Contains: Core protein p15;
Major core protein p24; Nucleic acid binding protein
p10]
Length = 450
Score = 44.3 bits (103), Expect = 0.002
Identities = 22/59 (37%), Positives = 32/59 (53%), Gaps = 6/59 (10%)
Query: 213 LIFESTTVAYAAQRRGKGHDMQQVQCFSCKQFGHIARSC-SKKFCNYCKQRGHIITECY 270
L+ E+ T Q +G G CF+CK+ GH+AR C K CN C + GH+ +C+
Sbjct: 357 LLAEALTKVQVVQSKGPGP-----VCFNCKRPGHLARQCRDVKKCNKCGKPGHLAAKCW 410
>GAG_VILV2 (P23425) Gag polyprotein [Contains: Core protein p16;
Core protein p25; Core protein p14]
Length = 442
Score = 43.5 bits (101), Expect = 0.004
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 215 FESTTVAYAAQRRGK-GHDMQQVQCFSCKQFGHIARSCSKK-FCNYCKQRGHIITEC 269
F+ +A A + +GK GH +C++C + GH+AR C + C++C +RGH+ +C
Sbjct: 363 FKMQLLAQALRPQGKAGHKGVNQKCYNCGKPGHLARQCRQGIICHHCGKRGHMQKDC 419
>GAG_VILV1 (P23424) Gag polyprotein [Contains: Core protein p16;
Core protein p25; Core protein p14]
Length = 442
Score = 43.5 bits (101), Expect = 0.004
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 215 FESTTVAYAAQRRGK-GHDMQQVQCFSCKQFGHIARSCSKK-FCNYCKQRGHIITEC 269
F+ +A A + +GK GH +C++C + GH+AR C + C++C +RGH+ +C
Sbjct: 363 FKMQLLAQALRPQGKAGHKGVNQKCYNCGKPGHLARQCRQGIICHHCGKRGHMQKDC 419
>GAG_VILV (P03352) Gag polyprotein [Contains: Core protein p16; Core
protein p25; Core protein p14]
Length = 442
Score = 43.5 bits (101), Expect = 0.004
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 215 FESTTVAYAAQRRGK-GHDMQQVQCFSCKQFGHIARSCSKK-FCNYCKQRGHIITEC 269
F+ +A A + +GK GH +C++C + GH+AR C + C++C +RGH+ +C
Sbjct: 363 FKMQLLAQALRPQGKAGHKGVNQKCYNCGKPGHLARQCRQGIICHHCGKRGHMQKDC 419
>GAG_HV1MA (P04594) Gag polyprotein [Contains: Core protein p17
(Matrix protein); Core protein p24 (Core antigen); Core
protein p2; Core protein p7 (Nucleocapsid protein); Core
protein p1; Core protein p6]
Length = 504
Score = 43.5 bits (101), Expect = 0.004
Identities = 35/132 (26%), Positives = 57/132 (42%), Gaps = 21/132 (15%)
Query: 162 DQFLMILRPEFEV------VRGSLLNRNVVPSLDTCVSEL----LREEQRLLTQGA---- 207
D+F LR E + +LL +N P T + L EE QG
Sbjct: 303 DRFFKTLRAEQATQEVKNWMTETLLVQNANPDCKTILKALGPGATLEEMMTACQGVGGPS 362
Query: 208 ----MSRDALIFESTTVAYAAQRRGKGHDMQQVQCFSCKQFGHIARSC---SKKFCNYCK 260
+ +A+ + + A +RG ++++CF+C + GH+AR+C KK C C
Sbjct: 363 HKARVLAEAMSQATNSTAAIMMQRGNFKGQKRIKCFNCGKEGHLARNCRAPRKKGCWKCG 422
Query: 261 QRGHIITECYVR 272
+ GH + +C R
Sbjct: 423 KEGHQMKDCTER 434
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 43.1 bits (100), Expect = 0.005
Identities = 53/250 (21%), Positives = 103/250 (41%), Gaps = 27/250 (10%)
Query: 15 RFSGKN-YSAWEFQFRMYVKGERLWSHLNGVSKAPTEKAALEEWETKDAQIITWILSTIN 73
+F+G N +S W+ + R + + L L+ SK P A E+W D + + I ++
Sbjct: 10 KFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKA-EDWADLDERAASAIRLHLS 68
Query: 74 PQMINNLRSFSFAQEMWNYLKRIYNQDNPAKRFQLELEI-ANYKQGNSSVQEYYSGFLNL 132
++NN+ A+ +W L+ +Y + L+ ++ A + ++ + + F L
Sbjct: 69 DDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNVFNGL 128
Query: 133 WTEHSAIIHADVPNIYLAAVQEVYNTSKQDQFLMILRPEFEVVRGSLLNRNVVPSLDTCV 192
T+ + N+ + +E K L L ++ + ++L+ L
Sbjct: 129 ITQ--------LANLGVKIEEE----DKAILLLNSLPSSYDNLATTILHGKTTIELKDVT 176
Query: 193 SELLREEQRLLTQGAMSRDALIFESTTVAY----------AAQRRGKGHDMQQVQ-CFSC 241
S LL E ++ + ALI E +Y A+ + K +V+ C++C
Sbjct: 177 SALLLNE-KMRKKPENQGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNC 235
Query: 242 KQFGHIARSC 251
Q GH R C
Sbjct: 236 NQPGHFKRDC 245
Score = 36.2 bits (82), Expect = 0.60
Identities = 15/38 (39%), Positives = 24/38 (62%)
Query: 570 KQVLKFFTDSGGEYMSHEFQEYLQHKGILSQ*SCPNTP 607
+++ + +D+GGEY S EF+EY GI + + P TP
Sbjct: 542 RKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTP 579
>CNBP_RAT (P62634) Cellular nucleic acid binding protein (CNBP)
(Zinc finger protein 9)
Length = 177
Score = 42.4 bits (98), Expect = 0.008
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 237 QCFSCKQFGHIARSCSKKFCNYCKQRGHIITEC 269
+C+SC +FGHI + C+K C C + GH+ C
Sbjct: 118 KCYSCGEFGHIQKDCTKVKCYRCGETGHVAINC 150
Score = 39.3 bits (90), Expect = 0.071
Identities = 16/43 (37%), Positives = 25/43 (57%), Gaps = 3/43 (6%)
Query: 232 DMQQVQCFSCKQFGHIARSCSKKF---CNYCKQRGHIITECYV 271
D +V+C+ C + GH+A +CSK C C + GH+ EC +
Sbjct: 131 DCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTI 173
Score = 36.2 bits (82), Expect = 0.60
Identities = 15/47 (31%), Positives = 26/47 (54%), Gaps = 6/47 (12%)
Query: 229 KGHDMQQVQCFSCKQFGHIARSCS------KKFCNYCKQRGHIITEC 269
K D+Q+ C++C + GHIA+ C ++ C C + GH+ +C
Sbjct: 65 KDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 111
Score = 32.3 bits (72), Expect = 8.7
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 238 CFSCKQFGHIARSC--SKKFCNYCKQRGHIITEC 269
C+ C + GH+A+ C + C C + GHI +C
Sbjct: 54 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDC 87
>CNBP_MOUSE (P53996) Cellular nucleic acid binding protein (CNBP)
(Zinc finger protein 9)
Length = 178
Score = 42.4 bits (98), Expect = 0.008
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 237 QCFSCKQFGHIARSCSKKFCNYCKQRGHIITEC 269
+C+SC +FGHI + C+K C C + GH+ C
Sbjct: 119 KCYSCGEFGHIQKDCTKVKCYRCGETGHVAINC 151
Score = 39.3 bits (90), Expect = 0.071
Identities = 16/43 (37%), Positives = 25/43 (57%), Gaps = 3/43 (6%)
Query: 232 DMQQVQCFSCKQFGHIARSCSKKF---CNYCKQRGHIITECYV 271
D +V+C+ C + GH+A +CSK C C + GH+ EC +
Sbjct: 132 DCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTI 174
Score = 32.7 bits (73), Expect = 6.7
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Query: 229 KGHDMQQVQ-CFSCKQFGHIARSCS------KKFCNYCKQRGHIITEC 269
K D+Q+ + C++C + GHIA+ C ++ C C + GH+ +C
Sbjct: 65 KDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 112
>CNBP_HUMAN (P62633) Cellular nucleic acid binding protein (CNBP)
(Zinc finger protein 9)
Length = 177
Score = 42.4 bits (98), Expect = 0.008
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 237 QCFSCKQFGHIARSCSKKFCNYCKQRGHIITEC 269
+C+SC +FGHI + C+K C C + GH+ C
Sbjct: 118 KCYSCGEFGHIQKDCTKVKCYRCGETGHVAINC 150
Score = 39.3 bits (90), Expect = 0.071
Identities = 16/43 (37%), Positives = 25/43 (57%), Gaps = 3/43 (6%)
Query: 232 DMQQVQCFSCKQFGHIARSCSKKF---CNYCKQRGHIITECYV 271
D +V+C+ C + GH+A +CSK C C + GH+ EC +
Sbjct: 131 DCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTI 173
Score = 36.2 bits (82), Expect = 0.60
Identities = 15/47 (31%), Positives = 26/47 (54%), Gaps = 6/47 (12%)
Query: 229 KGHDMQQVQCFSCKQFGHIARSCS------KKFCNYCKQRGHIITEC 269
K D+Q+ C++C + GHIA+ C ++ C C + GH+ +C
Sbjct: 65 KDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 111
Score = 32.3 bits (72), Expect = 8.7
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 238 CFSCKQFGHIARSC--SKKFCNYCKQRGHIITEC 269
C+ C + GH+A+ C + C C + GHI +C
Sbjct: 54 CYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDC 87
>CNBP_CHICK (O42395) Cellular nucleic acid binding protein (CNBP)
Length = 172
Score = 42.4 bits (98), Expect = 0.008
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 237 QCFSCKQFGHIARSCSKKFCNYCKQRGHIITEC 269
+C+SC +FGHI + C+K C C + GH+ C
Sbjct: 113 KCYSCGEFGHIQKDCTKVKCYRCGETGHVAINC 145
Score = 39.3 bits (90), Expect = 0.071
Identities = 16/43 (37%), Positives = 25/43 (57%), Gaps = 3/43 (6%)
Query: 232 DMQQVQCFSCKQFGHIARSCSKKF---CNYCKQRGHIITECYV 271
D +V+C+ C + GH+A +CSK C C + GH+ EC +
Sbjct: 126 DCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECTI 168
Score = 33.5 bits (75), Expect = 3.9
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 238 CFSCKQFGHIARSC---SKKFCNYCKQRGHIITEC 269
C+ C + GH+A+ C K C C + GHI +C
Sbjct: 48 CYRCGESGHLAKDCDLQEDKACYNCGRGGHIAKDC 82
Score = 32.3 bits (72), Expect = 8.7
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 7/48 (14%)
Query: 229 KGHDMQQVQ-CFSCKQFGHIARSCS------KKFCNYCKQRGHIITEC 269
K D+Q+ + C++C + GHIA+ C ++ C C + GH+ +C
Sbjct: 59 KDCDLQEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 106
>GAG_HV1JR (P20873) Gag polyprotein [Contains: Core protein p17
(Matrix protein); Core protein p24 (Core antigen); Core
protein p2; Core protein p7 (Nucleocapsid protein); Core
protein p1; Core protein p6]
Length = 503
Score = 41.6 bits (96), Expect = 0.014
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 225 QRRGKGHDMQQVQCFSCKQFGHIARSC---SKKFCNYCKQRGHIITECYVR 272
QR + + V+CF+C + GHIAR+C KK C C + GH + EC R
Sbjct: 378 QRGNFRNQRKNVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKECTER 428
>GAG_HV1B5 (P04593) Gag polyprotein [Contains: Core protein p17
(Matrix protein); Core protein p24 (Core antigen); Core
protein p2; Core protein p7 (Nucleocapsid protein); Core
protein p1; Core protein p6]
Length = 511
Score = 40.8 bits (94), Expect = 0.024
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 214 IFESTTVAYAAQRRGKGHDMQQVQCFSCKQFGHIARSCS---KKFCNYCKQRGHIITECY 270
+ STT+ QR + + V+CF+C + GHIAR+C KK C C + GH + +C
Sbjct: 369 VTNSTTIMM--QRGNFRNQRKIVKCFNCGKEGHIARNCKAPRKKGCWKCGKEGHQMKDCT 426
Query: 271 VR 272
R
Sbjct: 427 ER 428
>GIS2_YEAST (P53849) Zinc-finger protein GIS2
Length = 153
Score = 40.4 bits (93), Expect = 0.032
Identities = 17/43 (39%), Positives = 23/43 (52%), Gaps = 3/43 (6%)
Query: 237 QCFSCKQFGHIARSCSKKFCNYCKQRGHIITECYVRPPPSTQS 279
QC++C + GH+ C+ + C C Q GHI EC P P S
Sbjct: 48 QCYNCGETGHVRSECTVQRCFNCNQTGHISREC---PEPKKTS 87
Score = 40.0 bits (92), Expect = 0.042
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 233 MQQVQCFSCKQFGHIARSC-SKKFCNYCKQRGHIITEC 269
M Q C+ C + GH+A C S++ C C + GH+ T+C
Sbjct: 1 MSQKACYVCGKIGHLAEDCDSERLCYNCNKPGHVQTDC 38
Score = 37.7 bits (86), Expect = 0.21
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 236 VQCFSCKQFGHIARSC-SKKFCNYCKQRGHIITEC 269
++C++C Q GH++R C + + C C + GHI +C
Sbjct: 116 LKCYTCGQAGHMSRDCQNDRLCYNCNETGHISKDC 150
Score = 32.7 bits (73), Expect = 6.7
Identities = 13/41 (31%), Positives = 22/41 (52%), Gaps = 6/41 (14%)
Query: 238 CFSCKQFGHIARSCSK------KFCNYCKQRGHIITECYVR 272
C++C + GH+ C+ K C C + GH+ +EC V+
Sbjct: 25 CYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSECTVQ 65
>GAG_VILVK (P35955) Gag polyprotein [Contains: Core protein p16;
Core protein p25; Core protein p14]
Length = 442
Score = 40.4 bits (93), Expect = 0.032
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 215 FESTTVAYAAQRRGK-GHDMQQVQCFSCKQFGHIARSCSKK-FCNYCKQRGHIITEC 269
F+ +A A + +GK G +C++C + GH+AR C + C++C +RGH+ +C
Sbjct: 363 FKMQLLAQALRPQGKAGQKGVNQKCYNCGKPGHLARQCRQGIICHHCGKRGHMQKDC 419
>GAG_HV1PV (P03350) Gag polyprotein [Contains: Core protein p17
(Matrix protein); Core protein p24 (Core antigen); Core
protein p2; Core protein p7 (Nucleocapsid protein); Core
protein p1; Core protein p6]
Length = 511
Score = 40.4 bits (93), Expect = 0.032
Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 15/110 (13%)
Query: 178 SLLNRNVVPSLDTCVSEL----LREEQRLLTQGA--------MSRDALIFESTTVAYAAQ 225
+LL +N P T + L EE QG + +A+ + T Q
Sbjct: 319 TLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNTATIMMQ 378
Query: 226 RRGKGHDMQQVQCFSCKQFGHIARSC---SKKFCNYCKQRGHIITECYVR 272
R + + V+CF+C + GH AR+C KK C C + GH + +C R
Sbjct: 379 RGNFRNQRKMVKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTER 428
>GAG_HV1B1 (P03347) Gag polyprotein [Contains: Core protein p17
(Matrix protein); Core protein p24 (Core antigen); Core
protein p2; Core protein p7 (Nucleocapsid protein); Core
protein p1; Core protein p6]
Length = 511
Score = 40.4 bits (93), Expect = 0.032
Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 15/110 (13%)
Query: 178 SLLNRNVVPSLDTCVSEL----LREEQRLLTQGA--------MSRDALIFESTTVAYAAQ 225
+LL +N P T + L EE QG + +A+ + T Q
Sbjct: 319 TLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNTATIMMQ 378
Query: 226 RRGKGHDMQQVQCFSCKQFGHIARSC---SKKFCNYCKQRGHIITECYVR 272
R + + V+CF+C + GH AR+C KK C C + GH + +C R
Sbjct: 379 RGNFRNQRKMVKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTER 428
>GAG_HV1LW (Q70622) Gag polyprotein [Contains: Core protein p17
(Matrix protein); Core protein p24 (Core antigen); Core
protein p2; Core protein p7 (Nucleocapsid protein); Core
protein p1; Core protein p6]
Length = 499
Score = 40.0 bits (92), Expect = 0.042
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 218 TTVAYAAQRRGKGHDMQQ-VQCFSCKQFGHIARSC---SKKFCNYCKQRGHIITECYVR 272
T A +RG + ++ V+CF+C + GHIAR+C KK C C + GH + +C R
Sbjct: 370 TNSATIMMQRGNFRNQRKIVKCFNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTER 428
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.347 0.154 0.508
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,442,362
Number of Sequences: 164201
Number of extensions: 5165396
Number of successful extensions: 21601
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 21398
Number of HSP's gapped (non-prelim): 206
length of query: 1309
length of database: 59,974,054
effective HSP length: 122
effective length of query: 1187
effective length of database: 39,941,532
effective search space: 47410598484
effective search space used: 47410598484
T: 11
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.7 bits)
S2: 72 (32.3 bits)
Medicago: description of AC146758.11