BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146752.3 - phase: 0 /pseudo
(620 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
PEM1_ARATH (Q9FR44) Phosphoethanolamine N-methyltransferase 1 (E... 38 0.069
YT37_STRFR (P20187) Hypothetical 37.1 kDa protein in transposon ... 37 0.15
PEM3_ARATH (Q9C6B9) Putative phosphoethanolamine N-methyltransfe... 37 0.15
PEAM_SPIOL (Q9M571) Phosphoethanolamine N-methyltransferase (EC ... 37 0.20
PEM2_ARATH (Q944H0) Putative phosphoethanolamine N-methyltransfe... 36 0.26
UBIG_BRAJA (Q89XU2) 3-demethylubiquinone-9 3-methyltransferase (... 36 0.34
UBIG_AGRT5 (Q8UA66) 3-demethylubiquinone-9 3-methyltransferase (... 35 0.45
ERG6_CANAL (O74198) Sterol 24-C-methyltransferase (EC 2.1.1.41) ... 35 0.45
YAFS_ECOLI (P75672) Hypothetical protein yafS 35 0.58
YE98_MYCTU (P71779) Hypothetical protein Rv1498c/MT1546 34 1.3
BXEN_CLOBO (P46082) Botulinum neurotoxin type E, nontoxic component 34 1.3
BIOC_ERWHE (O06898) Biotin synthesis protein bioC 34 1.3
MURC_AQUAE (O67373) UDP-N-acetylmuramate--L-alanine ligase (EC 6... 33 1.7
ERG6_SCHPO (O14321) Probable sterol 24-C-methyltransferase (EC 2... 33 1.7
POLG_EC22H (Q66578) Genome polyprotein [Contains: Coat protein V... 32 3.8
NH64_CAEEL (O44960) Nuclear hormone receptor family member nhr-64 32 4.9
COAT_SOCMV (P15627) Coat protein 32 4.9
LR17_HUMAN (Q8N6Y2) Leucine-rich repeat-containing protein 17 pr... 32 6.5
POLG_EC23W (O73556) Genome polyprotein [Contains: Coat protein V... 31 8.4
POLG_EC23C (Q9YID8) Genome polyprotein [Contains: Coat protein V... 31 8.4
>PEM1_ARATH (Q9FR44) Phosphoethanolamine N-methyltransferase 1 (EC
2.1.1.103) (PEAMT 1) (AtNMT1)
Length = 491
Score = 38.1 bits (87), Expect = 0.069
Identities = 48/193 (24%), Positives = 82/193 (41%), Gaps = 28/193 (14%)
Query: 128 QNNERLTCLIPKPIGYKNPFPWPKSKDNAWFSNVPFTKLVEYKKSQNWITLVGDRFVFPG 187
+ N+ C I + + +N + + DN + + + ++ Y++ + G FV G
Sbjct: 216 KKNQNQICWIWQKVSSENDRGFQRFLDNVQYKS---SGILRYER------VFGQGFVSTG 266
Query: 188 GGTSFPDGVKGYVDDLKKLLPVNLDSGRIRTVLDVGCGVASFGASLMDYDILTMSIAPSD 247
G + K +V+ + NL G+ VLDVGCG+ G + + + D
Sbjct: 267 G----LETTKEFVEKM------NLKPGQ--KVLDVGCGIG--GGDFYMAEKFDVHVVGID 312
Query: 248 EHDAQVMFALERGLPAMLGV-FSTHRLT---FPSKSFDVAHCSRCLVPWIANDGLYLREI 303
+ FALER + V F T +P SFDV + SR + I + R
Sbjct: 313 LSVNMISFALERAIGLSCSVEFEVADCTTKHYPDNSFDVIY-SRDTILHIQDKPALFRTF 371
Query: 304 DRILRPGGFWVLS 316
+ L+PGG ++S
Sbjct: 372 FKWLKPGGKVLIS 384
>YT37_STRFR (P20187) Hypothetical 37.1 kDa protein in transposon
TN4556
Length = 345
Score = 37.0 bits (84), Expect = 0.15
Identities = 43/147 (29%), Positives = 62/147 (41%), Gaps = 26/147 (17%)
Query: 190 TSFPDGVKGYVDDL---------KKLLPVNLDSGRIRTVLDVGCGVASFGASLMDYDILT 240
++ PD V Y+D L K ++ LD+ + LD+GCG + D L
Sbjct: 93 SAVPDEVS-YLDQLATTDAARSYKSVMLDALDARPGESALDLGCGPGT------DLGTLA 145
Query: 241 MSIAPS------DEHDAQVMFALER--GLPAM-LGVFSTHRLTFPSKSFDVAHCSRCLVP 291
+++PS D V A R LPA+ + + H L S D A R L
Sbjct: 146 KAVSPSGRVIGIDSSQEMVEQARRRTENLPAVEVELGDIHTLPLEDGSIDCARTDRVL-Q 204
Query: 292 WIANDGLYLREIDRILRPGGFWVLSGP 318
+A+ L E R+LRPGG V+ P
Sbjct: 205 HVADPAQALAEARRVLRPGGRLVMGEP 231
>PEM3_ARATH (Q9C6B9) Putative phosphoethanolamine
N-methyltransferase 3 (EC 2.1.1.103)
Length = 490
Score = 37.0 bits (84), Expect = 0.15
Identities = 45/158 (28%), Positives = 70/158 (43%), Gaps = 27/158 (17%)
Query: 163 FTKLVEYKKSQ--NWITLVGDRFVFPGGGTSFPDGVKGYVDDLKKLLPVNLDSGRIRTVL 220
F V+YK S + + G+ FV GG + K +VD L +L G+ VL
Sbjct: 239 FLDNVQYKSSGILRYERVFGEGFVSTGG----LETTKEFVDML------DLKPGQ--KVL 286
Query: 221 DVGCGVAS---FGASLMDYDILTMSIAPSDEHDAQVMFALERGLPAMLGV-FSTHRLT-- 274
DVGCG+ + A D D++ + ++ + + FALE + V F T
Sbjct: 287 DVGCGIGGGDFYMAENFDVDVVGIDLSVN-----MISFALEHAIGLKCSVEFEVADCTKK 341
Query: 275 -FPSKSFDVAHCSRCLVPWIANDGLYLREIDRILRPGG 311
+P +FDV + SR + I + R + L+PGG
Sbjct: 342 EYPDNTFDVIY-SRDTILHIQDKPALFRRFYKWLKPGG 378
>PEAM_SPIOL (Q9M571) Phosphoethanolamine N-methyltransferase (EC
2.1.1.103)
Length = 494
Score = 36.6 bits (83), Expect = 0.20
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 219 VLDVGCGVASFGASLMD-YDILTMSIAPSDEHDAQVMFALERGLPAMLGV-FSTHRLT-- 274
VLDVGCG+ + + YD+ + I D + FALER + V F T
Sbjct: 289 VLDVGCGIGGGDFYMAENYDVEVVGI---DLSINMISFALERSIGLKCAVEFEVADCTKK 345
Query: 275 -FPSKSFDVAHCSRCLVPWIANDGLYLREIDRILRPGGFWVLS 316
+P SFDV + SR + I + R + L+PGG ++S
Sbjct: 346 DYPENSFDVIY-SRDTILHIQDKPALFRSFHKWLKPGGKVLIS 387
>PEM2_ARATH (Q944H0) Putative phosphoethanolamine
N-methyltransferase 2 (EC 2.1.1.103)
Length = 475
Score = 36.2 bits (82), Expect = 0.26
Identities = 42/188 (22%), Positives = 75/188 (39%), Gaps = 28/188 (14%)
Query: 128 QNNERLTCLIPKPIGYKNPFPWPKSKDNAWFSNVPFTKLVEYKKSQNWITLVGDRFVFPG 187
+ N+ C I + + +N + + DN + + + ++ Y++ + G+ +V G
Sbjct: 200 KKNQNQICWIWQKVSVENDKDFQRFLDNVQYKS---SGILRYER------VFGEGYVSTG 250
Query: 188 GGTSFPDGVKGYVDDLKKLLPVNLDSGRIRTVLDVGCGVASFGASLMDYDILTMSIAPSD 247
G + + V +D + VLDVGCG+ G + + + D
Sbjct: 251 GFETTKEFV------------AKMDLKPGQKVLDVGCGIG--GGDFYMAENFDVHVVGID 296
Query: 248 EHDAQVMFALERGL----PAMLGVFSTHRLTFPSKSFDVAHCSRCLVPWIANDGLYLREI 303
+ FALER + V T+P SFDV + SR + I + R
Sbjct: 297 LSVNMISFALERAIGLKCSVEFEVADCTTKTYPDNSFDVIY-SRDTILHIQDKPALFRTF 355
Query: 304 DRILRPGG 311
+ L+PGG
Sbjct: 356 FKWLKPGG 363
>UBIG_BRAJA (Q89XU2) 3-demethylubiquinone-9 3-methyltransferase (EC
2.1.1.64) (3,4-dihydroxy-5-hexaprenylbenzoate
methyltransferase) (DHHB methyltransferase)
Length = 253
Score = 35.8 bits (81), Expect = 0.34
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 1/105 (0%)
Query: 219 VLDVGCGVASFGASLMDYDILTMSIAPSDEHDAQVMFALERGLPAMLGVFSTHRLTFPSK 278
VLD+GCG L + + PS + A ++ A+ +T P +
Sbjct: 74 VLDIGCGAGLLCEPLSRLGAQVIGVDPSQSNIAAAKLHADKSHLAIDYRCTTVEEIDPRE 133
Query: 279 SFDVAHCSRCLVPWIANDGLYLREIDRILRPGGFWVLSGPPINWR 323
FD+ +V + + G++L+ +L+P G V+S NW+
Sbjct: 134 RFDIVLAME-VVEHVVDVGVFLKRCAAMLKPNGLMVVSTLNRNWK 177
>UBIG_AGRT5 (Q8UA66) 3-demethylubiquinone-9 3-methyltransferase (EC
2.1.1.64) (3,4-dihydroxy-5-hexaprenylbenzoate
methyltransferase) (DHHB methyltransferase)
Length = 250
Score = 35.4 bits (80), Expect = 0.45
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 14/100 (14%)
Query: 219 VLDVGCG-------VASFGASLMDYDILTMSIAPSDEHDAQVMFALERGLPAMLGVFSTH 271
VLD+GCG VA GA+++ D +I + H A E G+ +
Sbjct: 68 VLDIGCGGGLLSEPVARMGATVVGADPSEKNIGIASTH------ARESGVSVDYRAVTAE 121
Query: 272 RLTFPSKSFDVAHCSRCLVPWIANDGLYLREIDRILRPGG 311
+L +SFDV + +V +AN L++ +++RPGG
Sbjct: 122 QLQEAGESFDVI-LNMEVVEHVANVDLFVTTCAKMVRPGG 160
>ERG6_CANAL (O74198) Sterol 24-C-methyltransferase (EC 2.1.1.41)
(Delta(24)-sterol C-methyltransferase)
Length = 376
Score = 35.4 bits (80), Expect = 0.45
Identities = 31/111 (27%), Positives = 50/111 (44%), Gaps = 18/111 (16%)
Query: 219 VLDVGCGVASFGASLMDYDILTMSIAPSDEHDAQV--------MFALERGLPAMLGVFST 270
VLDVGCGV G + + I + +D Q+ + L+ L + G F
Sbjct: 126 VLDVGCGVGGPGREITRF--TDCEIVGLNNNDYQIERANHYAKKYHLDHKLSYVKGDFM- 182
Query: 271 HRLTFPSKSFDVAHCSRCLVPWIANDGLYLREIDRILRPGGF-----WVLS 316
++ F +SFD + V +G+Y EI ++L+PGG WV++
Sbjct: 183 -QMDFEPESFDAVYAIEATVHAPVLEGVY-SEIYKVLKPGGIFGVYEWVMT 231
>YAFS_ECOLI (P75672) Hypothetical protein yafS
Length = 240
Score = 35.0 bits (79), Expect = 0.58
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 259 RGLPAMLGVFSTHRLTFPSKSFDVAHCSRCLVPWIANDGLYLREIDRILRPGGFWVLSG 317
+G+P + H L F KS DV + L PW + LRE DR+L G+ V+SG
Sbjct: 71 QGMPVQVQADPLH-LPFADKSVDVCLLAHTL-PWCTDPHRLLREADRVLIDDGWLVISG 127
>YE98_MYCTU (P71779) Hypothetical protein Rv1498c/MT1546
Length = 205
Score = 33.9 bits (76), Expect = 1.3
Identities = 35/113 (30%), Positives = 43/113 (37%), Gaps = 20/113 (17%)
Query: 219 VLDVGCGVASFGASLMDY----------DILTMSIAPSDEH--DAQVMFALE-----RGL 261
+LDVGCG L Y DI +IA EH A F E L
Sbjct: 1 MLDVGCGSGRMALPLTGYLNSEGRYAGFDISQKAIAWCQEHITSAHPNFQFEVSDIYNSL 60
Query: 262 PAMLGVFST--HRLTFPSKSFDVAHCSRCLVPWIAND-GLYLREIDRILRPGG 311
G + + R +P SFDV + D YL EI R+L+PGG
Sbjct: 61 YNPKGKYQSLDFRFPYPDASFDVVFLTSVFTHMFPPDVEHYLDEISRVLKPGG 113
>BXEN_CLOBO (P46082) Botulinum neurotoxin type E, nontoxic component
Length = 1162
Score = 33.9 bits (76), Expect = 1.3
Identities = 40/193 (20%), Positives = 73/193 (37%), Gaps = 38/193 (19%)
Query: 428 NDSPPRLRKENHDVFSLKTYSEDNM------IWKKRVSYYEVMLKSLSSGKYRNVMD--- 478
ND +++ N+ S+K Y E IW+ +SY+ + + +Y N ++
Sbjct: 266 NDYEIKIKNNNYIANSIKLYLEQKFKINVKDIWELNLSYFSKEFQIMMPERYNNALNHYY 325
Query: 479 ----------MNAGFGGFAAALVKY--------------PVWVMNVVPFDAKSNNLGIIY 514
N GF +K P ++N++ + IY
Sbjct: 326 RKEFYVIDYFKNYNINGFKNGQIKTKLPLSKYNKEIINKPELIVNLINQNNTVLMKSNIY 385
Query: 515 ERGLIGTYMDWCEPFSTYPRTYDLIHAYALFSMYIDKCDITDIVIEMHRILRPEGTVIIR 574
GL GT ++ +S Y Y+L + +++ Y+D +I + IE + E R
Sbjct: 386 GDGLKGTVDNF---YSNYIIPYNLNYEHSINYFYLDNVNIEE--IEKIPPINDEDIYPYR 440
Query: 575 DSRDVILKVKEIT 587
+ D + V IT
Sbjct: 441 KNADTFIPVYNIT 453
>BIOC_ERWHE (O06898) Biotin synthesis protein bioC
Length = 251
Score = 33.9 bits (76), Expect = 1.3
Identities = 30/108 (27%), Positives = 45/108 (40%), Gaps = 8/108 (7%)
Query: 206 LLPVNLDSGRIRTVLDVGCGVASFGASLMDY--DILTMSIAPSDEHDAQVMFALERGLPA 263
LL L R +VLD GCG S D ++ + ++ AQ A + + A
Sbjct: 33 LLLAKLGERRPASVLDAGCGPGSMSRYWRDAGAEVTALDLSLPMLRQAQSQQAAQHYVAA 92
Query: 264 MLGVFSTHRLTFPSKSFDVAHCSRCLVPWIANDGLYLREIDRILRPGG 311
+ L FD+A S V W + G L+ + R++RPGG
Sbjct: 93 DI-----EALPLADARFDLAW-SNLAVQWCNDLGQALKSLHRVVRPGG 134
>MURC_AQUAE (O67373) UDP-N-acetylmuramate--L-alanine ligase (EC
6.3.2.8) (UDP-N-acetylmuramoyl-L-alanine synthetase)
Length = 454
Score = 33.5 bits (75), Expect = 1.7
Identities = 20/67 (29%), Positives = 29/67 (42%), Gaps = 9/67 (13%)
Query: 532 YPRTYDLIHAYALFSMYIDKCDITDIV---------IEMHRILRPEGTVIIRDSRDVILK 582
Y RTY L + IDK +TDI + + R G V +D +V K
Sbjct: 361 YSRTYYLFEDFVKVLKDIDKLIVTDIYPASENNVYGVSAEELARKSGAVFAKDKEEVFEK 420
Query: 583 VKEITDK 589
V+E+ D+
Sbjct: 421 VREVHDE 427
>ERG6_SCHPO (O14321) Probable sterol 24-C-methyltransferase (EC
2.1.1.41) (Delta(24)-sterol C-methyltransferase)
Length = 378
Score = 33.5 bits (75), Expect = 1.7
Identities = 31/111 (27%), Positives = 52/111 (45%), Gaps = 18/111 (16%)
Query: 219 VLDVGCGVASFGASLMDYDILTMSIAPSDEHDAQVM----FALERGLPA----MLGVFST 270
VLDVGCGV + ++ ++ + +D Q+ +A++R L + G F
Sbjct: 128 VLDVGCGVGGPAREITEF--TGCNLVGLNNNDYQISRCNNYAVKRNLDKKQVFVKGDFM- 184
Query: 271 HRLTFPSKSFDVAHCSRCLVPWIANDGLYLREIDRILRPGGF-----WVLS 316
+ F +FD + V + +G+Y EI R+L+PGG WV+S
Sbjct: 185 -HMPFEDNTFDYVYAIEATVHAPSLEGVY-GEIFRVLKPGGVFGVYEWVMS 233
>POLG_EC22H (Q66578) Genome polyprotein [Contains: Coat protein VP0
(P1AB); Coat protein VP3 (P1C); Coat protein VP1 (P1D);
Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core
protein P2B; Core protein P2C; Core protein P3A;
Genome-linked protein VPG (P3
Length = 2180
Score = 32.3 bits (72), Expect = 3.8
Identities = 36/194 (18%), Positives = 71/194 (36%), Gaps = 24/194 (12%)
Query: 292 WIANDGLYLREIDRILRPGGFWVLSGPPINWRVNYKAWQTE----PTVLEKEQNNLEELA 347
W+ G+ +E+ R+ GG G ++Y + ++ K + N + L
Sbjct: 1627 WMTEQGIITKEVQRVHHSGGIKTREGTESTKTISYTVKSCKGMCGGLLISKVEGNFKILG 1686
Query: 348 MQMCWEKVAEGGQIAIWQKPINHIKCMQKLNTLSSPKFCNSSDSDAGWYTKMTACIFPLP 407
M +A G++ + P N +K N +S Y I P
Sbjct: 1687 MH-----IAGNGEMGV-AIPFNFLK-----NDMSDQGIVTEITPIQPMYINTKTQIHKSP 1735
Query: 408 EVKDID-EIAGGVLEKWPIRLNDSPPRLRKENHDVFSLKTYSEDNMIWKKRVSYYEVMLK 466
++ ++ VL K RL + L K++ + + + +N +W+ +K
Sbjct: 1736 VYGAVEVKMGPAVLSKSDTRLEEPVECLIKKSASKYRVNKFQVNNELWQG--------VK 1787
Query: 467 SLSSGKYRNVMDMN 480
+ K+R + MN
Sbjct: 1788 ACVKSKFREIFGMN 1801
>NH64_CAEEL (O44960) Nuclear hormone receptor family member nhr-64
Length = 412
Score = 32.0 bits (71), Expect = 4.9
Identities = 28/136 (20%), Positives = 58/136 (42%), Gaps = 15/136 (11%)
Query: 344 EELAMQMCWEKVAEGGQIAIWQKPINHIKCMQKLNTLSSPKFCNSSDSDAGWYTKMTACI 403
++L + + W KV EG Q + ++ + + F + SDA W T T
Sbjct: 207 QQLTLMVEWAKVLEGFQRVDNITQVALLRHFSAQHLVMCAAFRSIHLSDAVWLTNETCLH 266
Query: 404 FPLPEVKDIDEIAGGVLEKWPIRLNDSPPRLRKENHDVFSLKTYSEDNMIWKKRVSYYEV 463
P++ D++ +A ++++ +P R N E I K +++++
Sbjct: 267 KDSPKIPDMNRVAERIIDQ-----VTNPMRSLHMN----------EIEYIALKAIAFFDP 311
Query: 464 MLKSLSSGKYRNVMDM 479
+ K ++S Y +V +M
Sbjct: 312 LAKGITSESYSDVEEM 327
>COAT_SOCMV (P15627) Coat protein
Length = 441
Score = 32.0 bits (71), Expect = 4.9
Identities = 18/56 (32%), Positives = 28/56 (49%), Gaps = 4/56 (7%)
Query: 101 NYCPCEDPKRQKKFPKKNYFRKERHCPQNNERLTCLIPKPIG-YKNPFPWPKSKDN 155
N+ + +++K F KK FRK++ CP ++ C + G Y N P KDN
Sbjct: 349 NFWKWNNQRKKKTFRKKRPFRKQQTCPTGKKKCQCWLCHEEGHYANECP---KKDN 401
>LR17_HUMAN (Q8N6Y2) Leucine-rich repeat-containing protein 17
precursor (p37NB) (UNQ3076/PRO9909)
Length = 441
Score = 31.6 bits (70), Expect = 6.5
Identities = 27/85 (31%), Positives = 37/85 (42%), Gaps = 7/85 (8%)
Query: 60 ITTFFIFLYIITSSF---FTSPLTLHSPITTKISHFQFC-STNYTNYCPCEDPKRQKKFP 115
+ T +F+Y S+ + +P I T IS Q + N NY CE P+ QK
Sbjct: 143 VLTEEVFIYTPLLSYLRLYDNPWHCTCEIETLISMLQIPRNRNLGNYAKCESPQEQKN-K 201
Query: 116 KKNYFRKERHCPQNNERLTCLIPKP 140
K + E+ C N E L PKP
Sbjct: 202 KLRQIKSEQLC--NEEEKEQLDPKP 224
>POLG_EC23W (O73556) Genome polyprotein [Contains: Coat protein VP0
(P1AB); Coat protein VP3 (P1C); Coat protein VP1 (P1D);
Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core
protein P2B; Core protein P2C; Core protein P3A;
Genome-linked protein VPG (P3
Length = 2179
Score = 31.2 bits (69), Expect = 8.4
Identities = 35/194 (18%), Positives = 72/194 (37%), Gaps = 24/194 (12%)
Query: 292 WIANDGLYLREIDRILRPGGFWVLSGPPINWRVNYKAWQTE----PTVLEKEQNNLEELA 347
W+ G+ +E+ R+ GG G ++Y + ++ K + N + L
Sbjct: 1626 WMTEQGIITKEVQRVHHSGGIKTREGTESTKTISYTVKSCKGMCGGLLISKVEGNFKILG 1685
Query: 348 MQMCWEKVAEGGQIAIWQKPINHIKCMQKLNTLSSPKFCNSSDSDAGWYTKMTACIFPLP 407
M +A G++ + P N +K N +S Y + I P
Sbjct: 1686 MH-----IAGNGEMGV-AIPFNFLK-----NDMSDQGIVTEVTPIQPMYINTKSQIHKSP 1734
Query: 408 EVKDID-EIAGGVLEKWPIRLNDSPPRLRKENHDVFSLKTYSEDNMIWKKRVSYYEVMLK 466
++ ++ VL K RL + L K++ + + + +N +W+ +K
Sbjct: 1735 VYGAVEVKMGPAVLSKSDTRLEEPVDCLVKKSASKYRVNKFQVNNELWQG--------VK 1786
Query: 467 SLSSGKYRNVMDMN 480
+ K+R + +N
Sbjct: 1787 ACVKSKFREIFGVN 1800
>POLG_EC23C (Q9YID8) Genome polyprotein [Contains: Coat protein VP0
(P1AB); Coat protein VP3 (P1C); Coat protein VP1 (P1D);
Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core
protein P2B; Core protein P2C; Core protein P3A;
Genome-linked protein VPG (P3
Length = 2188
Score = 31.2 bits (69), Expect = 8.4
Identities = 35/194 (18%), Positives = 72/194 (37%), Gaps = 24/194 (12%)
Query: 292 WIANDGLYLREIDRILRPGGFWVLSGPPINWRVNYKAWQTE----PTVLEKEQNNLEELA 347
W+ G+ +E+ R+ GG G ++Y + ++ K + N + L
Sbjct: 1635 WMTEQGIITKEVQRVHHSGGIKTREGTESTKTISYTVKSCKGMCGGLLISKVEGNFKILG 1694
Query: 348 MQMCWEKVAEGGQIAIWQKPINHIKCMQKLNTLSSPKFCNSSDSDAGWYTKMTACIFPLP 407
M +A G++ + P N +K N +S Y + I P
Sbjct: 1695 MH-----IAGNGEMGV-AIPFNFLK-----NDMSDQGIITEVTPIQPMYINTKSQIHKSP 1743
Query: 408 EVKDID-EIAGGVLEKWPIRLNDSPPRLRKENHDVFSLKTYSEDNMIWKKRVSYYEVMLK 466
++ ++ VL K RL + L K++ + + + +N +W+ +K
Sbjct: 1744 VYGAVEVKMGPAVLSKSDTRLEEPVDCLIKKSASKYRVNKFQVNNELWQG--------VK 1795
Query: 467 SLSSGKYRNVMDMN 480
+ K+R + +N
Sbjct: 1796 ACVKSKFREIFGVN 1809
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.325 0.140 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,934,549
Number of Sequences: 164201
Number of extensions: 3621742
Number of successful extensions: 9812
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 9804
Number of HSP's gapped (non-prelim): 26
length of query: 620
length of database: 59,974,054
effective HSP length: 116
effective length of query: 504
effective length of database: 40,926,738
effective search space: 20627075952
effective search space used: 20627075952
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 69 (31.2 bits)
Medicago: description of AC146752.3