BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146752.15 + phase: 0 /pseudo
         (178 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NU4M_HANWI (P48917) NADH-ubiquinone oxidoreductase chain 4 (EC 1...    33  0.27
NU2M_ALBCO (P48902) NADH-ubiquinone oxidoreductase chain 2 (EC 1...    30  2.3
YF84_ARCFU (O28688) Hypothetical protein AF1584                        29  5.0
QAY_NEUCR (P11636) Quinate permease (Quinate transporter)              29  6.6
SEN1_SCHPO (Q92355) Helicase sen1 (EC 3.6.1.-) (Endonuclease sen1)     28  8.6
NU6M_YARLI (Q9B6E9) NADH-ubiquinone oxidoreductase chain 6 (EC 1...    28  8.6

>NU4M_HANWI (P48917) NADH-ubiquinone oxidoreductase chain 4 (EC
           1.6.5.3)
          Length = 511

 Score = 33.5 bits (75), Expect = 0.27
 Identities = 28/154 (18%), Positives = 66/154 (42%), Gaps = 29/154 (18%)

Query: 8   YVHDQKYPSEDVDIHHIVLRSNGGKYFFVY---ASALIVLACGIYLYLLEEKSISLVY-- 62
           Y  + K   + ++ ++I  R     Y F+Y   +S  ++L+ GIY+Y++     + +Y  
Sbjct: 161 YNGNNKIIIKGINNNNITPREKAAYYIFIYTLFSSLFMLLSIGIYIYMINNIDYNNIYNI 220

Query: 63  ------YSLLFDIFLVKLLLRLPVIKVLKLILVILTKLSFSCRVCCDYASFWSTA*DSLY 116
                  S++F   ++ +L++ PV  V   + ++  +   S  +                
Sbjct: 221 ILSIDLQSIIFIGLIIGILVKTPVFPVHTWLPLVHAESPISGSI---------------- 264

Query: 117 EPVLLECVTPVTCYWTLSLIVREESEMVLVYKNL 150
             +L   +  +  Y  + LI+   S+++++Y  L
Sbjct: 265 --ILAGIIIKLAIYAIIRLILINLSDVIIIYNPL 296


>NU2M_ALBCO (P48902) NADH-ubiquinone oxidoreductase chain 2 (EC
           1.6.5.3)
          Length = 307

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 7/69 (10%)

Query: 32  KYFFVYASALIVLACGIYLYLLEEKSISLVYYSLL----FDIFLVKLLLRLPVIKV-LKL 86
           KYF  Y  +L++L   ++LYL ++ SISL   SL     F +F+ K+ + L +++  L  
Sbjct: 195 KYFITYGFSLVILL--VFLYLGDKMSISLSLLSLSGLPPFMLFIGKINVLLMMMETNLWF 252

Query: 87  ILVILTKLS 95
           I+++   LS
Sbjct: 253 IVLVFAILS 261


>YF84_ARCFU (O28688) Hypothetical protein AF1584
          Length = 146

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 22/76 (28%), Positives = 36/76 (46%), Gaps = 10/76 (13%)

Query: 35  FVYASALIVLACGIYLYLLEEKS------ISLVYYSLLFDIFLVKLL----LRLPVIKVL 84
           FVY  A++++A G+Y+ L   K       ++++  S L  IFL        + +P +K L
Sbjct: 32  FVYVGAIMIVAFGVYIILGRSKKPGFKEMLAVMLISALTAIFLAYFFSGSEVIVPKLKSL 91

Query: 85  KLILVILTKLSFSCRV 100
            L  V+   L    RV
Sbjct: 92  GLFAVVAAMLLALARV 107


>QAY_NEUCR (P11636) Quinate permease (Quinate transporter)
          Length = 537

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 31  GKYFFVYASALIVLACGIYLYLLEEKSISLVYYSLLFDI 69
           G YFF +AS +++    IY +L E KSI L     LF+I
Sbjct: 459 GVYFF-FASLMLLSIVFIYFFLPETKSIPLEAMDRLFEI 496


>SEN1_SCHPO (Q92355) Helicase sen1 (EC 3.6.1.-) (Endonuclease sen1)
          Length = 1687

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 24/71 (33%), Positives = 36/71 (49%), Gaps = 13/71 (18%)

Query: 48  IYLYLLEEKSISLVYYSLLFDIFLVKLLLRLPVIKVLKLILVILTKLSFSC-RVCCDYAS 106
           ++L LL  +SI+    S+L D  L        ++K  +     L+    SC R+CC+ +S
Sbjct: 232 MFLELLPLQSITAACESILKDYLL-------NLVKTSES----LSSQQMSCLRICCNSSS 280

Query: 107 FWSTA*DSLYE 117
           FWS A DS  E
Sbjct: 281 FWSAA-DSFKE 290


>NU6M_YARLI (Q9B6E9) NADH-ubiquinone oxidoreductase chain 6 (EC
          1.6.5.3)
          Length = 185

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 14/59 (23%), Positives = 32/59 (53%), Gaps = 1/59 (1%)

Query: 33 YFFVYASALIVLACGIYLYLLEEKSISLVYYSLLFDIFLVKL-LLRLPVIKVLKLILVI 90
          Y+F+  +  + + C I++   +   +S++Y   LF I  + L L+ L +  +L +++ I
Sbjct: 6  YYFIEITIFLAILCTIFIISAKNPMVSILYMIALFVIAAMYLYLIGLGIFSLLYIMIYI 64


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.331    0.144    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,235,267
Number of Sequences: 164201
Number of extensions: 721198
Number of successful extensions: 1890
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1890
Number of HSP's gapped (non-prelim): 6
length of query: 178
length of database: 59,974,054
effective HSP length: 103
effective length of query: 75
effective length of database: 43,061,351
effective search space: 3229601325
effective search space used: 3229601325
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 62 (28.5 bits)