BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146751.12 - phase: 0
(513 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NOL1_HUMAN (P46087) Proliferating-cell nucleolar antigen p120 (P... 525 e-149
NOP2_YEAST (P40991) Nucleolar protein NOP2 474 e-133
Y026_METJA (Q60343) Hypothetical protein MJ0026 176 1e-43
YEBU_ECOLI (P76273) Hypothetical protein yebU 157 8e-38
RSMB_SYNY3 (P72943) Ribosomal RNA small subunit methyltransferas... 131 5e-30
RSMB_ECOL6 (Q8FD12) Ribosomal RNA small subunit methyltransferas... 127 7e-29
RSMB_PHOLL (Q7MYI0) Ribosomal RNA small subunit methyltransferas... 127 9e-29
RSMB_ECO57 (Q8XEE5) Ribosomal RNA small subunit methyltransferas... 125 3e-28
RSMB_YERPE (Q8ZJ81) Ribosomal RNA small subunit methyltransferas... 124 8e-28
RSMB_SHIFL (Q7UBD3) Ribosomal RNA small subunit methyltransferas... 124 8e-28
RSMB_ECOLI (P36929) Ribosomal RNA small subunit methyltransferas... 123 1e-27
RSMB_VIBCH (Q9KVU5) Ribosomal RNA small subunit methyltransferas... 121 5e-27
RSMB_SALTY (Q8ZLM5) Ribosomal RNA small subunit methyltransferas... 120 1e-26
RSMB_SALTI (Q8Z1X1) Ribosomal RNA small subunit methyltransferas... 120 1e-26
RSMB_BACSU (P94464) Ribosomal RNA small subunit methyltransferas... 118 4e-26
RSMB_VIBPA (Q87KD3) Ribosomal RNA small subunit methyltransferas... 114 5e-25
RSMB_PASMU (Q9CKP7) Ribosomal RNA small subunit methyltransferas... 112 3e-24
RSMB_VIBVU (Q8DDE5) Ribosomal RNA small subunit methyltransferas... 110 7e-24
RSMB_VIBVY (Q7MGK4) Ribosomal RNA small subunit methyltransferas... 110 9e-24
RSMB_HAEDU (Q7VKC4) Ribosomal RNA small subunit methyltransferas... 110 9e-24
>NOL1_HUMAN (P46087) Proliferating-cell nucleolar antigen p120
(Proliferation-associated nucleolar protein p120)
Length = 855
Score = 525 bits (1353), Expect = e-149
Identities = 279/534 (52%), Positives = 365/534 (68%), Gaps = 34/534 (6%)
Query: 2 APATKKKPSKPVKPQKAPKKVQIVPIKDDSTSESEEE-EAPPLQHLELDGSDSDLSSDGD 60
AP T K P P K PK + ++ + AP + GSD + + +
Sbjct: 61 APKTNKSPEAKPSPGKLPKGISAGAVQTAGKKGPQSLFNAPRGKKRPAPGSDEE--EEEE 118
Query: 61 DQLADDFLQGSD---DEDNDNDNDDEGSDLESGSGSDEDEDSDSESGEEDIARKSKLI-- 115
D D + D ED+ + DD G+D S S+++E+ ++ E ARK K
Sbjct: 119 DSEEDGMVNHGDLWGSEDDADTVDDYGAD----SNSEDEEEGEALLPIERAARKQKAREA 174
Query: 116 ------------DRKRERD-----SQAAADELQTNIQTNIQDESDEFTLPTKQELEEEAL 158
D + E++ +E +Q N+ +E F LP E+E++A
Sbjct: 175 AAGIQWSEEETEDEEEEKEVTPESGPPKVEEADGGLQINVDEEP--FVLPPAGEMEQDA- 231
Query: 159 RPPDLSNLQRRIKEIVRVLSNFKALRQDGATRKDYVDQLKTDIRSYYGYNEFLIGALVEM 218
+ PDL + +RI++IV +L +F A R++G +R +Y+++LK D+ YY Y +FL+G L+++
Sbjct: 232 QAPDLQRVHKRIQDIVGILRDFGAQREEGRSRSEYLNRLKKDLAIYYSYGDFLLGKLMDL 291
Query: 219 FPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDS 278
FP+ EL+E +EA E PRP+ LRTNTLKTRRRDLA LINRGVNLDPL KWSK GLVVYDS
Sbjct: 292 FPLSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDS 351
Query: 279 QVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERIVDMAAAPGGKTTYIAALMKNSGI 338
VPIGATPEY+AG YMLQ ASS LPVMALAPQE ERI+DM APGGKT+Y+A LMKN+G+
Sbjct: 352 SVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGV 411
Query: 339 IFANEMKVPRLKSLTANLHRMGVSNTVVSNYDGKELPKVLGFNSVDRVLLDAPCSGTGVI 398
I AN+ RLKS+ NLHR+GV+NT++S+YDG++ PKV+G DRVLLDAPCSGTGVI
Sbjct: 412 ILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQFPKVVG--GFDRVLLDAPCSGTGVI 469
Query: 399 SKDESVKTSKNLEDIKKCAHLQKELLLAAIDMVDSYSKSGGYVVYSTCSIMVAENEAVID 458
SKD +VKT+K+ +DI +CAHLQKELLL+AID V++ SK+GGY+VY TCSI V ENE V+D
Sbjct: 470 SKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVD 529
Query: 459 YVLKRRDVKLVPCGLDFGRPGFTKFREQRFHPSLDKTRRFYPHVHNMDGFFVAK 512
Y LK+R+V+LVP GLDFG+ GFT+FRE+RFHPSL TRRFYPH HNMDGFF+AK
Sbjct: 530 YALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLRSTRRFYPHTHNMDGFFIAK 583
>NOP2_YEAST (P40991) Nucleolar protein NOP2
Length = 618
Score = 474 bits (1219), Expect = e-133
Identities = 259/510 (50%), Positives = 343/510 (66%), Gaps = 16/510 (3%)
Query: 6 KKKPSKPVKPQKAPKKVQIVPIKDDSTSESEEEEAPPLQHLELDGSDSDLSSDGDDQLAD 65
KKK SKP K + ++ ++V D EE + + L D D D + D++L D
Sbjct: 49 KKKKSKPFKKSRKEEE-EVVEEDKDLPEVDLEELSKARKSLFDDEEDDDEAGLVDEELKD 107
Query: 66 DF-LQGSDDEDNDNDNDDEGSDLESGSGSDEDEDSDSES-GEEDIARKSKLIDRKRERDS 123
+F L+ D D D DND SD+D+++D E +++ SK +D + ++
Sbjct: 108 EFDLEQEYDYDEDEDNDAHPIF------SDDDDEADLEELNAQNMEALSKKLDEEEAEEA 161
Query: 124 QAAADELQTNIQTNIQDESDEFTLPTKQELEEEALRPPDLSNLQRRIKEIVRVLSNFKAL 183
+ A EL N+Q +D LPT+++ E A P+L++ + R+ EIV+VL NFK L
Sbjct: 162 EEAEMELVE--AENMQPRAD--ILPTEEQEEMMAQETPNLTSTRTRMIEIVKVLENFKTL 217
Query: 184 RQDGATRKDYVDQLKTDIRSYYGYNEFLIGALVEMFPVVELMELIEAFEKPRPICLRTNT 243
+G +R +YVD+L DI Y+GY FL L +F E ME EA E RPI +RTNT
Sbjct: 218 GAEGRSRGEYVDRLLKDICEYFGYTPFLAEKLFNLFSPAEAMEFFEANEIARPITIRTNT 277
Query: 244 LKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLP 303
LKTRRRDLA L+NRGVNL P+ W+KVGL ++DSQVPIGATPEY+AG Y+LQ+ASSFLP
Sbjct: 278 LKTRRRDLAQTLVNRGVNLQPIGSWTKVGLQIFDSQVPIGATPEYLAGHYILQAASSFLP 337
Query: 304 VMALAPQEKERIVDMAAAPGGKTTYIAALMKNSGIIFANEMKVPRLKSLTANLHRMGVSN 363
V+AL P E ERI+DMAAAPGGKTTYI+A+MKN+G +FAN+ R KSL AN+HR+G +N
Sbjct: 338 VIALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKSRTKSLIANIHRLGCTN 397
Query: 364 TVVSNYDGKELPKVLGFNSVDRVLLDAPCSGTGVISKDESVKTSKNLEDIKKCAHLQKEL 423
T+V NYD +E PKV+G DR+LLDAPCSGTGVI KD+SVK S+ +D + HLQK+L
Sbjct: 398 TIVCNYDAREFPKVIG--GFDRILLDAPCSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQL 455
Query: 424 LLAAIDMVDSYSKSGGYVVYSTCSIMVAENEAVIDYVLKRR-DVKLVPCGLDFGRPGFTK 482
LL+AID VD SK GG +VYSTCS+ V E+EAVIDY L++R +VKLV GL G+ FT
Sbjct: 456 LLSAIDSVDCNSKHGGVIVYSTCSVAVEEDEAVIDYALRKRPNVKLVDTGLAIGKEAFTS 515
Query: 483 FREQRFHPSLDKTRRFYPHVHNMDGFFVAK 512
+R ++FHPS+ RR+YPH +N+DGFFVAK
Sbjct: 516 YRGKKFHPSVKLARRYYPHTYNVDGFFVAK 545
>Y026_METJA (Q60343) Hypothetical protein MJ0026
Length = 274
Score = 176 bits (446), Expect = 1e-43
Identities = 107/234 (45%), Positives = 145/234 (61%), Gaps = 13/234 (5%)
Query: 239 LRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSA 298
+R NTLK L L N+GV L+ + V S IG+TPEY+ G+YM QS
Sbjct: 13 IRVNTLKINPEVLKKRLENKGVVLE--KTFLDYAFEVKKSPFSIGSTPEYLFGYYMPQSI 70
Query: 299 SSFLPVMALAPQEKERIVDMAAAPGGKTTYIAALMKNSGIIFANEMKVPRLKSLTANLHR 358
SS +P + L P+E + I+DM AAPGGKTT++A LMKN G I A E+ R K+L +N++R
Sbjct: 71 SSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINR 130
Query: 359 MGVSNTVVSNYDGKELPKVLGFNSV--DRVLLDAPCSGTGVISKDESVKTSKNLEDIKKC 416
MGV NT++ N D ++ L N + D++LLDAPCSG + K+ +V EDIK C
Sbjct: 131 MGVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSE----EDIKYC 186
Query: 417 AHLQKELLLAAIDMVDSYSKSGGYVVYSTCSIMVAENEAVIDYVL-KRRDVKLV 469
+ QKEL+ ID++ K G +VYSTCS+ V ENE VI Y+L KR DV+L+
Sbjct: 187 SLRQKELIDIGIDLL----KKDGELVYSTCSMEVEENEEVIKYILQKRNDVELI 236
>YEBU_ECOLI (P76273) Hypothetical protein yebU
Length = 479
Score = 157 bits (396), Expect = 8e-38
Identities = 106/299 (35%), Positives = 164/299 (54%), Gaps = 29/299 (9%)
Query: 226 ELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVY---DSQVPI 282
+ + A ++P +R NTLK D + G L P+ W + G + + +P+
Sbjct: 28 DFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPIP-WCEEGFWIERDNEDALPL 86
Query: 283 GATPEYMAGFYMLQSASSFLPVMAL-----APQEKERIVDMAAAPGGKTTYIAALMKNSG 337
G+T E+++G + +Q ASS LPV AL APQ R++D+AAAPG KTT I+A M N G
Sbjct: 87 GSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ---RVMDVAAAPGSKTTQISARMNNEG 143
Query: 338 IIFANEMKVPRLKSLTANLHRMGVSNTVVSNYDGKELPKVLGFNSVDRVLLDAPCSGTGV 397
I ANE R+K L AN+ R G+SN ++++DG+ + D +LLDAPCSG GV
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVP-EMFDAILLDAPCSGEGV 202
Query: 398 ISKDESVKTSKNLEDIKKCAHLQKELLLAAIDMVDSYSKSGGYVVYSTCSIMVAENEAVI 457
+ KD + + E ++ A Q+EL+ +A + + GG +VYSTC++ ENEAV
Sbjct: 203 VRKDPDALKNWSPESNQEIAATQRELIDSAFHAL----RPGGTLVYSTCTLNQEENEAVC 258
Query: 458 DYVLKRRD--VKLVPCGLDFGRPGFTK-FREQRFHPSLDKTRRFYPHVHNMDGFFVAKV 513
++ + V+ +P G F PG K E+ F +P +++ +GFFVA++
Sbjct: 259 LWLKETYPDAVEFLPLGDLF--PGANKALTEEGF-------LHVFPQIYDCEGFFVARL 308
>RSMB_SYNY3 (P72943) Ribosomal RNA small subunit methyltransferase B
(EC 2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase)
Length = 446
Score = 131 bits (329), Expect = 5e-30
Identities = 102/344 (29%), Positives = 162/344 (46%), Gaps = 17/344 (4%)
Query: 171 KEIVRVLSNFKALRQDGATRKDYVDQLKTDIRSYYGYNEFLIGALVEMFPVVELMELIEA 230
K + +L ++ + G K+ +DQ K + Y + ++L+ + + E L
Sbjct: 116 KVVNGMLRRYQRAEEQG---KNILDQEKISLGEQYSFPDWLMELFEQTWGKAETESLCAY 172
Query: 231 FEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMA 290
F + + LR N LKT R ++A L + ++ + GL + I P +
Sbjct: 173 FNQNPSLDLRINPLKTSRVEVAQSLAELNLTTTAMAGLPQ-GLRLGGKTGAITQLPGFAE 231
Query: 291 GFYMLQSASSFLPVMALAPQEKERIVDMAAAPGGKTTYIAALMKNSGIIFANEMKVPRLK 350
G++ +Q AS+ L PQ +E I D+ AAPGGKTT+IA LM + G I+A + RL+
Sbjct: 232 GWWTVQDASAQWVAQILNPQPEETIFDVCAAPGGKTTHIAELMGDQGQIYAGDRHGWRLQ 291
Query: 351 SLTANLHRMGVSNTVVSNYDGKELPKVLGFNSVDRVLLDAPCSGTGVISKDESVKTSKNL 410
L R+G+++ + D + VDR LLD PCSG G + ++ ++ +
Sbjct: 292 KLAVTQQRLGLTSIKIWEGDLTQPGVKPPVELVDRALLDVPCSGLGTLHRNPDLRWRQTP 351
Query: 411 EDIKKCAHLQKELLLAAIDMVDSYSKSGGYVVYSTCSIMVAENEAVIDYVLKRRDVKLVP 470
I LQ+ LL A +V KSGG +VYSTC++ AENEA I+ L+ +
Sbjct: 352 ATIATLLPLQQALLKAIAPLV----KSGGTLVYSTCTLNPAENEAQIERFLQDHE----- 402
Query: 471 CGLDFGRPGFTKFREQRFHPSLDK-TRRFYPHVHNMDGFFVAKV 513
D+ F Q S+ PH H+ DGFF+A +
Sbjct: 403 ---DWRSEPFEWTSPQGQTNSVTSGMLTILPHHHHQDGFFIANL 443
>RSMB_ECOL6 (Q8FD12) Ribosomal RNA small subunit methyltransferase B
(EC 2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase)
(16S rRNA m5C967 methyltransferase)
Length = 429
Score = 127 bits (319), Expect = 7e-29
Identities = 99/310 (31%), Positives = 153/310 (48%), Gaps = 27/310 (8%)
Query: 205 YGYNEFLIGALVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDP 264
Y + +L+ L + +P + ++EA + P+ LR N R +L G+ P
Sbjct: 143 YLHPSWLLKRLQKAYPE-QWQSIVEANNQRPPMWLRVNRTHHSRDSWLALLDEAGMKGFP 201
Query: 265 LSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERIVDMAAAPGG 324
+ + V ++ P+ A P + G+ +Q AS+ + LAPQ E I+D+ AAPGG
Sbjct: 202 HADYPDA--VQLETPAPVHALPGFEEGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGG 259
Query: 325 KTTYIAALMKNSGIIFANEMKVPRLKSLTANLHRMGVSNTVVSNYDGKELPKVLGFNSVD 384
KTT+I + + ++ A ++ RL + NL R+G+ TV DG+ + G D
Sbjct: 260 KTTHILEVAPEAQVL-AVDIDEQRLSRVYDNLKRLGMKATVKQG-DGRYPSQWCGEQQFD 317
Query: 385 RVLLDAPCSGTGVISKDESVKTSKNLEDIKKCAHLQKELLLAAIDMVDSYSKSGGYVVYS 444
R+LLDAPCS TGVI + +K + DI + A LQ E+L D + S+ KSGG +VY+
Sbjct: 318 RILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEIL----DAIWSHLKSGGTLVYA 373
Query: 445 TCSIMVAENEAVIDYVLKR-RDVKLVPCGLDFGRPGFTKFREQRFHPSLDKTRRFYPHVH 503
TCS++ EN I L+R D +L G +PG ++ P
Sbjct: 374 TCSVLPEENSLQIKAFLQRTADAELCETGTP-EQPG----------------KQNLPGAE 416
Query: 504 NMDGFFVAKV 513
DGFF AK+
Sbjct: 417 EGDGFFYAKL 426
>RSMB_PHOLL (Q7MYI0) Ribosomal RNA small subunit methyltransferase B
(EC 2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase)
(16S rRNA m5C967 methyltransferase)
Length = 429
Score = 127 bits (318), Expect = 9e-29
Identities = 90/267 (33%), Positives = 137/267 (50%), Gaps = 10/267 (3%)
Query: 203 SYYGYNEFLIGALVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNL 262
S++ + E+L+ + + +P + +LI A K P+ LR N + R + +L G++
Sbjct: 141 SHHLHPEWLLTRIQKAYPQ-QWQQLINANNKKPPMWLRVNRIYHSRDEYLTLLRKSGIDA 199
Query: 263 DPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERIVDMAAAP 322
+P K ++ S P+ P + G+ +Q S+ V L P E+I+D+ AAP
Sbjct: 200 EPAPKSPSAIRII--SPCPVTILPGFDKGWVTVQDLSAQECVELLKPINGEKILDLCAAP 257
Query: 323 GGKTTYIAALMKNSGIIFANEMKVPRLKSLTANLHRMGVSNTVVSNYDGKELPKVLGFNS 382
GGKTTYI + S ++ A ++ R+K + NL R+ TV + DG+
Sbjct: 258 GGKTTYILEIAPESQVV-AVDIDEQRIKRVKENLKRLNCHATVKTG-DGRHPEHWAENQQ 315
Query: 383 VDRVLLDAPCSGTGVISKDESVKTSKNLEDIKKCAHLQKELLLAAIDMVDSYSKSGGYVV 442
DR+LLDAPCS TGVI + +K + EDI + LQ E+L D + Y K G +V
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRREEDIAQLVQLQSEIL----DAIWPYLKKSGTLV 371
Query: 443 YSTCSIMVAENEAVIDYVLKRR-DVKL 468
Y+TCSI+ EN I LKR D KL
Sbjct: 372 YATCSILPDENCQQISSFLKRHSDAKL 398
>RSMB_ECO57 (Q8XEE5) Ribosomal RNA small subunit methyltransferase B
(EC 2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase)
(16S rRNA m5C967 methyltransferase)
Length = 429
Score = 125 bits (313), Expect = 3e-28
Identities = 102/332 (30%), Positives = 161/332 (47%), Gaps = 28/332 (8%)
Query: 183 LRQDGATRKDYVDQLKTDIRSYYGYNEFLIGALVEMFPVVELMELIEAFEKPRPICLRTN 242
LRQ +++ + + T Y + +L+ L + +P + ++EA + P+ LR N
Sbjct: 122 LRQFQRQQEELLAEFNTSDARYL-HPSWLLKRLQKAYPE-QWQSIVEANNQRPPMWLRIN 179
Query: 243 TLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFL 302
R +L G+ P + + V ++ P+ A P + G+ +Q AS+
Sbjct: 180 RTHHSRDTWLALLDEAGMKGFPHADYPDA--VRLETPAPVHALPGFEDGWVTVQDASAQG 237
Query: 303 PVMALAPQEKERIVDMAAAPGGKTTYIAALMKNSGIIFANEMKVPRLKSLTANLHRMGVS 362
+ LAPQ E I+D+ AAPGGKTT+I + + ++ A ++ RL + NL R+G+
Sbjct: 238 CMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVV-AVDIDEQRLSRVYDNLKRLGMK 296
Query: 363 NTVVSNYDGKELPKVLGFNSVDRVLLDAPCSGTGVISKDESVKTSKNLEDIKKCAHLQKE 422
TV DG+ + G DR+LLDAPCS TGVI + +K + DI + A LQ E
Sbjct: 297 ATVKQG-DGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSE 355
Query: 423 LLLAAIDMVDSYSKSGGYVVYSTCSIMVAENEAVIDYVLKR-RDVKLVPCGLDFGRPGFT 481
+L D + + KSGG +VY+TCS++ EN I L+R D +L G +PG
Sbjct: 356 IL----DAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETGTP-EQPG-- 408
Query: 482 KFREQRFHPSLDKTRRFYPHVHNMDGFFVAKV 513
++ P DGFF AK+
Sbjct: 409 --------------KQNLPGAEEGDGFFYAKL 426
>RSMB_YERPE (Q8ZJ81) Ribosomal RNA small subunit methyltransferase B
(EC 2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase)
(16S rRNA m5C967 methyltransferase)
Length = 429
Score = 124 bits (310), Expect = 8e-28
Identities = 93/312 (29%), Positives = 153/312 (48%), Gaps = 27/312 (8%)
Query: 203 SYYGYNEFLIGALVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNL 262
S+Y + +L+ + + +P + ++++A + P+ LR N L R + ++L +N
Sbjct: 141 SHYLHPSWLLARIKQAYPA-QWQQILDANNQRPPMWLRVNRLHHSRSEYLELLTQADINA 199
Query: 263 DPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERIVDMAAAP 322
+P + ++ + + P + G+ +Q AS+ V L PQ E+I+D+ AAP
Sbjct: 200 EPHPIYRDAVRLI--TPCAVNHLPGFELGWVTVQDASAQGCVDLLDPQNGEQILDLCAAP 257
Query: 323 GGKTTYIAALMKNSGIIFANEMKVPRLKSLTANLHRMGVSNTVVSNYDGKELPKVLGFNS 382
GGKTT+I + ++ A ++ RL + NL R+ + VV DG+ G
Sbjct: 258 GGKTTHILEAAPKAHVL-AVDIDEQRLSRVKENLQRLQLQ-AVVRVGDGRAPDTWCGDQQ 315
Query: 383 VDRVLLDAPCSGTGVISKDESVKTSKNLEDIKKCAHLQKELLLAAIDMVDSYSKSGGYVV 442
DR+LLDAPCS TGVI + +K + DI + A LQ E+ I+ + K GG +V
Sbjct: 316 FDRILLDAPCSATGVIRRHPDIKWLRRDRDISELAQLQSEI----IEAIWPKLKHGGVLV 371
Query: 443 YSTCSIMVAENEAVIDYVLKRR-DVKLVPCGLDFGRPGFTKFREQRFHPSLDKTRRFYPH 501
Y+TCSI+ EN+ I L+R + +L G PG ++ PH
Sbjct: 372 YATCSILPEENQQQIAAFLQRHPEAQLTETGTT-AAPG----------------KQNLPH 414
Query: 502 VHNMDGFFVAKV 513
+ DGFF AK+
Sbjct: 415 PEDGDGFFYAKI 426
>RSMB_SHIFL (Q7UBD3) Ribosomal RNA small subunit methyltransferase B
(EC 2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase)
(16S rRNA m5C967 methyltransferase)
Length = 429
Score = 124 bits (310), Expect = 8e-28
Identities = 104/333 (31%), Positives = 162/333 (48%), Gaps = 30/333 (9%)
Query: 183 LRQDGATRKDYVDQLKT-DIRSYYGYNEFLIGALVEMFPVVELMELIEAFEKPRPICLRT 241
LRQ +++ + + T D R Y + +L+ L + +P + + EA + P+ LR
Sbjct: 122 LRQFQRRQEELLAEFNTRDAR--YLHPSWLLKRLQKAYPE-QWQSIAEANNQRPPMWLRI 178
Query: 242 NTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSF 301
N R +L G+ P + + V ++ P+ A P + G+ +Q AS+
Sbjct: 179 NRTHHSRDSWLALLDEAGMKGFPHADYPDA--VRLETPAPVHALPGFEDGWVTVQDASAQ 236
Query: 302 LPVMALAPQEKERIVDMAAAPGGKTTYIAALMKNSGIIFANEMKVPRLKSLTANLHRMGV 361
+ LAPQ E I+D+ AAPGGKTT+I + + ++ A ++ RL + NL R+G+
Sbjct: 237 GCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVV-AVDIDEQRLSRIYDNLKRLGM 295
Query: 362 SNTVVSNYDGKELPKVLGFNSVDRVLLDAPCSGTGVISKDESVKTSKNLEDIKKCAHLQK 421
TV DG+ + G DR+LLDAPCS TGVI + +K + DI + A LQ
Sbjct: 296 KATVKQG-DGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQS 354
Query: 422 ELLLAAIDMVDSYSKSGGYVVYSTCSIMVAENEAVIDYVLKR-RDVKLVPCGLDFGRPGF 480
E+L D + + KSGG +VY+TCS++ EN I L+R D +L G +PG
Sbjct: 355 EIL----DAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETGTP-EQPG- 408
Query: 481 TKFREQRFHPSLDKTRRFYPHVHNMDGFFVAKV 513
++ P DGFF AK+
Sbjct: 409 ---------------KQNQPGAEEGDGFFYAKL 426
>RSMB_ECOLI (P36929) Ribosomal RNA small subunit methyltransferase B
(EC 2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase)
(16S rRNA m5C967 methyltransferase)
Length = 429
Score = 123 bits (309), Expect = 1e-27
Identities = 97/310 (31%), Positives = 152/310 (48%), Gaps = 27/310 (8%)
Query: 205 YGYNEFLIGALVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDP 264
Y + +L+ L + +P + ++EA + P+ LR N R +L G+ P
Sbjct: 143 YLHPSWLLKRLQKAYPE-QWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFP 201
Query: 265 LSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERIVDMAAAPGG 324
+ + V ++ P+ A P + G+ +Q AS+ + LAPQ E I+D+ AAPGG
Sbjct: 202 HADYPDA--VRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGG 259
Query: 325 KTTYIAALMKNSGIIFANEMKVPRLKSLTANLHRMGVSNTVVSNYDGKELPKVLGFNSVD 384
KTT+I + + ++ A ++ RL + NL R+G+ TV DG+ + G D
Sbjct: 260 KTTHILEVAPEAQVV-AVDIDEQRLSRVYDNLKRLGMKATVKQG-DGRYPSQWCGEQQFD 317
Query: 385 RVLLDAPCSGTGVISKDESVKTSKNLEDIKKCAHLQKELLLAAIDMVDSYSKSGGYVVYS 444
R+LLDAPCS TGVI + +K + DI + A LQ E+L D + + K+GG +VY+
Sbjct: 318 RILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEIL----DAIWPHLKTGGTLVYA 373
Query: 445 TCSIMVAENEAVIDYVLKR-RDVKLVPCGLDFGRPGFTKFREQRFHPSLDKTRRFYPHVH 503
TCS++ EN I L+R D +L G +PG ++ P
Sbjct: 374 TCSVLPEENSLQIKAFLQRTADAELCETGTP-EQPG----------------KQNLPGAE 416
Query: 504 NMDGFFVAKV 513
DGFF AK+
Sbjct: 417 EGDGFFYAKL 426
>RSMB_VIBCH (Q9KVU5) Ribosomal RNA small subunit methyltransferase B
(EC 2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase)
(16S rRNA m5C967 methyltransferase)
Length = 434
Score = 121 bits (303), Expect = 5e-27
Identities = 95/308 (30%), Positives = 147/308 (46%), Gaps = 28/308 (9%)
Query: 205 YGYNEFLIGALVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDP 264
YG+ +L+ L E +P + +++EA P+ LR N R + +L G+ P
Sbjct: 148 YGHPGWLLKLLKESYPE-QWQQIVEANNSKAPMWLRVNHQHHTRAEYQALLEQAGIVTTP 206
Query: 265 LSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERIVDMAAAPGG 324
++ + ++ + P + G+ +Q A++ L + LAPQ E I+D AAPGG
Sbjct: 207 HAQAEDA--LCLETPCDVHQLPGFAEGWVSVQDAAAQLALTYLAPQAGELILDCCAAPGG 264
Query: 325 KTTYIAALMKNSGIIFANEMKVPRLKSLTANLHRMGVSNTVVSNYDGKELPKVLGFNSVD 384
KT +I S ++ A + RLK + NL R+ ++ V+ D + + D
Sbjct: 265 KTAHILERTPESQVV-AIDCDETRLKRVRENLQRLELTAQVICG-DARYPQQWWQGEQFD 322
Query: 385 RVLLDAPCSGTGVISKDESVKTSKNLEDIKKCAHLQKELLLAAIDMVDSYSKSGGYVVYS 444
R+LLDAPCS TGVI + +K + +DI A LQ+E+L D + K GG +VY+
Sbjct: 323 RILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQREIL----DAMWQQLKPGGSLVYA 378
Query: 445 TCSIMVAENEAVIDYVLKRR-DVKLVPCGLDFGRPGFTKFREQRFHPSLDKTRRFYPHVH 503
TCSI EN + L+R D +LV G D +PG R+ P
Sbjct: 379 TCSITPQENRLQVKAFLERTPDARLV--GSDPAQPG----------------RQILPGEE 420
Query: 504 NMDGFFVA 511
MDGF+ A
Sbjct: 421 AMDGFYYA 428
>RSMB_SALTY (Q8ZLM5) Ribosomal RNA small subunit methyltransferase B
(EC 2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase)
(16S rRNA m5C967 methyltransferase)
Length = 429
Score = 120 bits (300), Expect = 1e-26
Identities = 86/254 (33%), Positives = 130/254 (50%), Gaps = 9/254 (3%)
Query: 210 FLIGALVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWS 269
+L+ L +P + +IEA + P+ LR N R +L + G+ P +
Sbjct: 148 WLVKRLQNAYPT-QWQHIIEANNQRPPMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYP 206
Query: 270 KVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERIVDMAAAPGGKTTYI 329
V ++ P+ A P + G+ +Q AS+ + LAPQ E I+D+ AAPGGKTT+I
Sbjct: 207 DA--VRLETPAPVHALPGFAEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAPGGKTTHI 264
Query: 330 AALMKNSGIIFANEMKVPRLKSLTANLHRMGVSNTVVSNYDGKELPKVLGFNSVDRVLLD 389
+ + ++ A ++ RL + NL R+G+ TV DG+ + G DR+LLD
Sbjct: 265 LEVAPEADVL-AVDIDEQRLSRVYDNLKRLGMKATVKQG-DGRYPSQWCGEQQFDRILLD 322
Query: 390 APCSGTGVISKDESVKTSKNLEDIKKCAHLQKELLLAAIDMVDSYSKSGGYVVYSTCSIM 449
APCS TGVI + +K + DI + A LQ E+L D V K GG +VY+TCS++
Sbjct: 323 APCSATGVIRRHPDIKWLRRDRDIAELAQLQAEIL----DAVWPRLKPGGTLVYATCSVL 378
Query: 450 VAENEAVIDYVLKR 463
EN I L+R
Sbjct: 379 PEENRDQIKTFLQR 392
>RSMB_SALTI (Q8Z1X1) Ribosomal RNA small subunit methyltransferase B
(EC 2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase)
(16S rRNA m5C967 methyltransferase)
Length = 429
Score = 120 bits (300), Expect = 1e-26
Identities = 86/254 (33%), Positives = 130/254 (50%), Gaps = 9/254 (3%)
Query: 210 FLIGALVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWS 269
+L+ L +P + +IEA + P+ LR N R +L + G+ P +
Sbjct: 148 WLVKRLQNAYPT-QWQRIIEANNQRPPMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYP 206
Query: 270 KVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERIVDMAAAPGGKTTYI 329
V ++ P+ A P + G+ +Q AS+ + LAPQ E I+D+ AAPGGKTT+I
Sbjct: 207 DA--VRLETPAPVHALPGFAEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAPGGKTTHI 264
Query: 330 AALMKNSGIIFANEMKVPRLKSLTANLHRMGVSNTVVSNYDGKELPKVLGFNSVDRVLLD 389
+ + ++ A ++ RL + NL R+G+ TV DG+ + G DR+LLD
Sbjct: 265 LEVAPEADVL-AVDIDEQRLSRVYDNLKRLGMKATVKQG-DGRYPAQWCGEQQFDRILLD 322
Query: 390 APCSGTGVISKDESVKTSKNLEDIKKCAHLQKELLLAAIDMVDSYSKSGGYVVYSTCSIM 449
APCS TGVI + +K + DI + A LQ E+L D V K GG +VY+TCS++
Sbjct: 323 APCSATGVIRRHPDIKWLRRDRDIAELAQLQAEIL----DAVWPRLKPGGTLVYATCSVL 378
Query: 450 VAENEAVIDYVLKR 463
EN I L+R
Sbjct: 379 PEENRDQIKAFLQR 392
>RSMB_BACSU (P94464) Ribosomal RNA small subunit methyltransferase B
(EC 2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase)
Length = 447
Score = 118 bits (295), Expect = 4e-26
Identities = 85/334 (25%), Positives = 152/334 (45%), Gaps = 15/334 (4%)
Query: 181 KALRQDGATRKDYVDQLKTDIRSYYGYNEFLIGALVEMFPVVELMELIEAFEKPRPICLR 240
++++++G D ++ + + + E+L+ + + ++ P LR
Sbjct: 124 RSIQREGVPSFDAIEDPVRRLATETSHPEWLVKEWADAYGFEAAEKICRIHLIPPKQTLR 183
Query: 241 TNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASS 300
N +K R +L D + G+ ++ K V + I T + G +Q SS
Sbjct: 184 VNQMKADRAELLDQMAAEGIEVE---KGDLAEDAVKLLKGTIAGTHFFQNGEVSIQDESS 240
Query: 301 FLPVMALAPQEKERIVDMAAAPGGKTTYIAALMKNSGIIFANEMKVPRLKSLTANLHRMG 360
L AL P+ E ++D AAPGGK+ +IA LMKN G + + ++ ++K + R+G
Sbjct: 241 MLVARALDPKSDETVLDACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKLIKEAADRLG 300
Query: 361 VSNTVVSNYDGKELPKVLGFNSVDRVLLDAPCSGTGVISKDESVKTSKNLEDIKKCAHLQ 420
++ D ++ + DR+L+DAPCSG GVI + +K +K +D + A +Q
Sbjct: 301 LTIIHAETMDARKAGETFENEQFDRILVDAPCSGFGVIRRKPDMKYTKKPDDSARLAEIQ 360
Query: 421 KELLLAAIDMVDSYSKSGGYVVYSTCSIMVAENEAVIDYVLKRRDVKLVPCGLDFGRPGF 480
+L +V K GG +VYSTC++ EN+ VI ++ L+ P
Sbjct: 361 LSILREIAPLV----KKGGTLVYSTCTMDRTENDEVIHAFIQEHPDFEPDLSLEKRLP-- 414
Query: 481 TKFREQRFHPSL-DKTRRFYPHVHNMDGFFVAKV 513
++ P + D + PH DGFF+ +
Sbjct: 415 -----EKVRPFVRDGRLQILPHYFGTDGFFICSM 443
>RSMB_VIBPA (Q87KD3) Ribosomal RNA small subunit methyltransferase B
(EC 2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase)
(16S rRNA m5C967 methyltransferase)
Length = 427
Score = 114 bits (286), Expect = 5e-25
Identities = 91/308 (29%), Positives = 145/308 (46%), Gaps = 28/308 (9%)
Query: 205 YGYNEFLIGALVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDP 264
YG+ +L+ L + +P + +++A + P+ LR N R + +L N N+D
Sbjct: 140 YGHPSWLLKLLQDAYPQ-QWESIVDANNQKAPMWLRVNHQHHTRDEYLALLKNE--NIDS 196
Query: 265 LSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERIVDMAAAPGG 324
+ + + + P + G+ +Q A++ L + L PQ+ E I+D AAPGG
Sbjct: 197 TPHTEAMDAIKLAAPCDVMKLPGFDKGWVSVQDAAAQLSINYLKPQDGELILDCCAAPGG 256
Query: 325 KTTYIAALMKNSGIIFANEMKVPRLKSLTANLHRMGVSNTVVSNYDGKELPKVLGFNSVD 384
KT +I S ++ A + RLK + NL R+ + VV D + + D
Sbjct: 257 KTAHILERTSGSEVV-AIDCDDTRLKRVHENLKRLNLQAKVVCG-DARNPQEWWQGEQFD 314
Query: 385 RVLLDAPCSGTGVISKDESVKTSKNLEDIKKCAHLQKELLLAAIDMVDSYSKSGGYVVYS 444
R+LLDAPCS TGVI + +K + +DI A LQ E+ D + + K GG +VY+
Sbjct: 315 RILLDAPCSATGVIRRHPDIKWLRRADDIAALAELQSEI----FDAMWTQLKPGGTMVYA 370
Query: 445 TCSIMVAEN-EAVIDYVLKRRDVKLVPCGLDFGRPGFTKFREQRFHPSLDKTRRFYPHVH 503
TCSI EN E V ++ + D +L+ D +PG R+ P
Sbjct: 371 TCSITPQENVEQVKAFLARTADAQLLDSDPD--QPG----------------RQILPGEE 412
Query: 504 NMDGFFVA 511
+MDGF+ A
Sbjct: 413 DMDGFYYA 420
>RSMB_PASMU (Q9CKP7) Ribosomal RNA small subunit methyltransferase B
(EC 2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase)
(16S rRNA m5C967 methyltransferase)
Length = 446
Score = 112 bits (279), Expect = 3e-24
Identities = 95/326 (29%), Positives = 150/326 (45%), Gaps = 37/326 (11%)
Query: 197 LKTDIRSYYGYNEFLIGALVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLI 256
+K D + + ++L+ L E +P E++EA P+ LR N K +L
Sbjct: 144 VKVDKHWHTLHPDWLVNRLKEAYP--NWREIVEANNHKPPMWLRVNQQKNSTETYRTLLA 201
Query: 257 NRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERIV 316
+G+ + + L+ V + P + G +Q ++ + LAP+ E I+
Sbjct: 202 EQGIEAEKADNPCALRLL---QPVAVSQLPAFHEGAVSVQDVNAQWSALLLAPENGELIL 258
Query: 317 DMAAAPGGKTTYIAALMKNSGIIFANEMKVPRLKSLTANLHRMGVSNTVVSN--YDGKEL 374
D AAPGGKTT+I + ++ A +++ RLK + NL RM TV+ +
Sbjct: 259 DACAAPGGKTTHILEQAPQAHVV-ALDVEATRLKRVHENLARMQQQATVICGDATQPAQW 317
Query: 375 PKVLGFNSV--DRVLLDAPCSGTGVISKDESVKTSKNLEDIKKCAHLQKELLLAAIDMVD 432
K L ++V DR+LLDAPCS TGVI + +K + DI LQK++L A ++
Sbjct: 318 LKQLSESAVQFDRILLDAPCSATGVIRRHPDIKWLRQASDISALVALQKQILQALWTVL- 376
Query: 433 SYSKSGGYVVYSTCSIMVAENEAVIDYVLKRR-DVKLVPCGLDF----GRPGFTKFREQR 487
K G ++Y+TCS++ EN I+ L D KL P L F G G+
Sbjct: 377 ---KPNGILLYATCSVLPEENALQIEQFLTNNVDAKLEP--LPFTAVEGSVGY------- 424
Query: 488 FHPSLDKTRRFYPHVHNMDGFFVAKV 513
+F P + DGF+ AK+
Sbjct: 425 ---------QFLPTENGGDGFYYAKL 441
>RSMB_VIBVU (Q8DDE5) Ribosomal RNA small subunit methyltransferase B
(EC 2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase)
(16S rRNA m5C967 methyltransferase)
Length = 426
Score = 110 bits (276), Expect = 7e-24
Identities = 90/308 (29%), Positives = 143/308 (46%), Gaps = 28/308 (9%)
Query: 205 YGYNEFLIGALVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDP 264
Y + +L+ L + +P + ++EA P+ LR N R + +L N N+D
Sbjct: 140 YVHPSWLLKILQDAYPE-QWQTIVEANNNKAPMWLRVNHAHHDRDEYLQLLKN--ANIDS 196
Query: 265 LSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERIVDMAAAPGG 324
+ + + + + P + G+ +Q A++ L L P++ E I+D AAPGG
Sbjct: 197 TLHSEAMDAIKLAAPCDVHSLPGFEQGWVSVQDAAAQLSFNYLQPKDGELILDCCAAPGG 256
Query: 325 KTTYIAALMKNSGIIFANEMKVPRLKSLTANLHRMGVSNTVVSNYDGKELPKVLGFNSVD 384
KT +I + ++ A + RLK +T NL R+ + V+ D + + D
Sbjct: 257 KTAHILERVSAREVV-ALDCDEQRLKRVTENLKRLNLQAKVICG-DARNPEQWWQGEQFD 314
Query: 385 RVLLDAPCSGTGVISKDESVKTSKNLEDIKKCAHLQKELLLAAIDMVDSYSKSGGYVVYS 444
R+LLDAPCS TGVI + +K + EDI A LQ E+ D + + K GG +VY+
Sbjct: 315 RILLDAPCSATGVIRRHPDIKWLRRAEDITALAQLQSEI----FDAMWAQLKPGGTLVYA 370
Query: 445 TCSIMVAEN-EAVIDYVLKRRDVKLVPCGLDFGRPGFTKFREQRFHPSLDKTRRFYPHVH 503
TCSI EN E V ++ + +LV G + PG R+ P
Sbjct: 371 TCSITPMENVEQVKAFLARTSAAQLV--GSERENPG----------------RQIIPGEE 412
Query: 504 NMDGFFVA 511
+MDGF+ A
Sbjct: 413 DMDGFYYA 420
>RSMB_VIBVY (Q7MGK4) Ribosomal RNA small subunit methyltransferase B
(EC 2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase)
(16S rRNA m5C967 methyltransferase)
Length = 426
Score = 110 bits (275), Expect = 9e-24
Identities = 90/308 (29%), Positives = 143/308 (46%), Gaps = 28/308 (9%)
Query: 205 YGYNEFLIGALVEMFPVVELMELIEAFEKPRPICLRTNTLKTRRRDLADVLINRGVNLDP 264
Y + +L+ L + +P + ++EA P+ LR N R + +L N N+D
Sbjct: 140 YVHPSWLLKILQDAYPE-QWQTIVEANNNKAPMWLRVNHAHHDRDEYLQLLKN--ANIDS 196
Query: 265 LSKWSKVGLVVYDSQVPIGATPEYMAGFYMLQSASSFLPVMALAPQEKERIVDMAAAPGG 324
+ + + + + P + G+ +Q A++ L L P++ E I+D AAPGG
Sbjct: 197 TLHSEAMDAIKLAAPCDVHSLPGFEQGWVSVQDAAAQLSFNYLQPKDGELILDCCAAPGG 256
Query: 325 KTTYIAALMKNSGIIFANEMKVPRLKSLTANLHRMGVSNTVVSNYDGKELPKVLGFNSVD 384
KT +I + ++ A + RLK +T NL R+ + V+ D + + D
Sbjct: 257 KTAHILERVSAREVV-ALDCDEQRLKRVTENLKRLNLQAKVICG-DARNPEQWWQGEQFD 314
Query: 385 RVLLDAPCSGTGVISKDESVKTSKNLEDIKKCAHLQKELLLAAIDMVDSYSKSGGYVVYS 444
R+LLDAPCS TGVI + +K + EDI A LQ E+ D + + K GG +VY+
Sbjct: 315 RILLDAPCSATGVIRRHPDIKWLRRAEDITALAQLQSEI----FDAMWAQLKPGGTLVYA 370
Query: 445 TCSIMVAEN-EAVIDYVLKRRDVKLVPCGLDFGRPGFTKFREQRFHPSLDKTRRFYPHVH 503
TCSI EN E V ++ + +LV G + PG R+ P
Sbjct: 371 TCSITPMENVEQVKAFLARTPAAQLV--GSERENPG----------------RQILPGEE 412
Query: 504 NMDGFFVA 511
+MDGF+ A
Sbjct: 413 DMDGFYYA 420
>RSMB_HAEDU (Q7VKC4) Ribosomal RNA small subunit methyltransferase B
(EC 2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase)
(16S rRNA m5C967 methyltransferase)
Length = 435
Score = 110 bits (275), Expect = 9e-24
Identities = 97/343 (28%), Positives = 161/343 (46%), Gaps = 30/343 (8%)
Query: 177 LSNFKALRQDGATRKDYVDQ----LKTDIRSYYGYNEFLIGALVEMFPVVELMELIEAFE 232
L +F+AL +G R+ +Q K D + E+L+ L +++P E+++A
Sbjct: 112 LDSFRALT-NGVLRRFLREQQTILAKVDKHWQTLHPEWLVNMLKQVYP--NWREIMDANN 168
Query: 233 KPRPICLRTNTLKTRRRDLADVLINRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYMAGF 292
+ P+ +R NT +D + +L + V S + + + + P + G+
Sbjct: 169 QRPPMWIRVNTQHCTPQDYSALLGDLAVKTTNSSACLPSSAIQLVNPLSVDKLPYFSRGW 228
Query: 293 YMLQSASSFLPVMALAPQEKERIVDMAAAPGGKTTYIAALMKNSGIIFANEMKVPRLKSL 352
+Q + LA + E I+D AAPGGKTT+I + +I A +++ RL +
Sbjct: 229 ATVQDCHAQWSATLLAAKNGEMILDACAAPGGKTTHILEQAPQAKVI-ALDIEESRLVRV 287
Query: 353 TANLHRMGVSNTVVSNYDGKELPKVLGFNSV-DRVLLDAPCSGTGVISKDESVKTSKNLE 411
NL R+G++ V D K L + + DR+LLDAPCS TGVI + +K +
Sbjct: 288 RENLARLGLTADVRCG-DATTPTKWLADDVMFDRILLDAPCSATGVIRRHPDIKWLRQAG 346
Query: 412 DIKKCAHLQKELLLAAIDMVDSYSKSGGYVVYSTCSIMVAEN-EAVIDYVLKRRDVKLVP 470
DI + LQ ++L A + K G +VY+TCSI+ AEN E +I ++ D +L+
Sbjct: 347 DISELVELQAKILSALWHRL----KPNGTLVYATCSILPAENSEQIIQFITANPDAELI- 401
Query: 471 CGLDFGRPGFTKFREQRFHPSLDKTRRFYPHVHNMDGFFVAKV 513
E F+ ++F P + DGFF AK+
Sbjct: 402 --------------EMDFNGEKAIMKQFLPQQNGGDGFFYAKL 430
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.313 0.133 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,995,775
Number of Sequences: 164201
Number of extensions: 2862336
Number of successful extensions: 26019
Number of sequences better than 10.0: 1037
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 702
Number of HSP's that attempted gapping in prelim test: 13623
Number of HSP's gapped (non-prelim): 4546
length of query: 513
length of database: 59,974,054
effective HSP length: 115
effective length of query: 398
effective length of database: 41,090,939
effective search space: 16354193722
effective search space used: 16354193722
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 68 (30.8 bits)
Medicago: description of AC146751.12