BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146751.11 - phase: 0 
         (399 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

RPA5_HUMAN (O15160) DNA-directed RNA polymerase I 40 kDa polypep...   266  9e-71
RPA5_MOUSE (P52432) DNA-directed RNA polymerase I 40 kDa polypep...   265  2e-70
RPC5_SCHPO (O94616) DNA-directed RNA polymerases I and III 40 kD...   236  1e-61
RPC5_YEAST (P07703) DNA-directed RNA polymerases I and III 40 kD...   216  6e-56
RP3A_ARATH (Q39211) DNA-directed RNA polymerase II 36 kDa polype...   147  4e-35
RP3B_ARATH (Q39212) DNA-directed RNA polymerase II 36 kDa polype...   143  9e-34
RPOD_METTH (O26144) DNA-directed RNA polymerase subunit D (EC 2....   134  4e-31
RPOD_ARCFU (O28002) DNA-directed RNA polymerase subunit D (EC 2....   119  1e-26
CNJC_TETTH (P16925) Conjugation stage-specific protein                115  2e-25
RPOD_SULSO (P95989) DNA-directed RNA polymerase subunit D (EC 2....   111  4e-24
RPOD_AERPE (Q9YB53) DNA-directed RNA polymerase subunit D (EC 2....   104  3e-22
RPB3_HUMAN (P19387) DNA-directed RNA polymerase II 33 kDa polype...   104  3e-22
RPOD_METKA (Q8TVB8) DNA-directed RNA polymerase subunit D (EC 2....   102  1e-21
RPOD_SULTO (Q96YW0) DNA-directed RNA polymerase subunit D (EC 2....   102  2e-21
RPOD_SULAC (P39471) DNA-directed RNA polymerase subunit D (EC 2....   101  3e-21
RPB3_MOUSE (P97760) DNA-directed RNA polymerase II 33 kDa polype...    99  2e-20
RPOD_PYRAE (Q8ZYQ3) DNA-directed RNA polymerase subunit D (EC 2....    97  7e-20
RPB3_SCHPO (P37382) DNA-directed RNA polymerase II 33 kDa polype...    94  5e-19
RPB3_YEAST (P16370) DNA-directed RNA polymerase II 45 kDa polype...    87  7e-17
RPOD_METJA (Q57648) DNA-directed RNA polymerase subunit D (EC 2....    85  3e-16

>RPA5_HUMAN (O15160) DNA-directed RNA polymerase I 40 kDa
           polypeptide (EC 2.7.7.6) (RPA40) (RPA39)
          Length = 346

 Score =  266 bits (679), Expect = 9e-71
 Identities = 155/372 (41%), Positives = 217/372 (57%), Gaps = 53/372 (14%)

Query: 42  LELQKTRVFCNLDAPQHTDTIQYSGAYAALGVDNSVRLDNFYQNFKVEVKRITDEEMEFD 101
           +E  ++RV       ++  T  + G Y+  G D++   D F +NF+V+V  + +  +EFD
Sbjct: 7   VEEMRSRVVLGEFGVRNVHTTDFPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFD 64

Query: 102 MIGIDPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHRLGLIPIDADPKLFEY 161
           M+GID A+ANAFRRIL+AEVPTMA+E+V + NNTS+VQDE+L+HRLGLIPI ADP+LFEY
Sbjct: 65  MVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEY 124

Query: 162 PDDAGGENNEKNTIVFKQHVRCEKGQPRLTVKSDT-------------LKWLP--NGSEL 206
            +    E  E +T+ F+  VRC +        SD              + W+P  N ++L
Sbjct: 125 RNQGDEEGTEIDTLQFRLQVRCTRNPHAAKDSSDPNELYVNHKVYTRHMTWIPLGNQADL 184

Query: 207 IAEGTKSAADPAPKTFTTFNQKSLPKFSKDPAPYNLDVIVAKLGPGQEIELEAHAVKGIG 266
             EGT                           P + D+++A+L PGQEI+L  H VKGIG
Sbjct: 185 FPEGTIR-------------------------PVHDDILIAQLRPGQEIDLLMHCVKGIG 219

Query: 267 KTHAKWSPVATAWYRMLPEVVLTKDVKDELAEELVSKCPAKVFDIEDIGRGRKKAVVKNA 326
           K HAK+SPVATA YR+LP++ L + V+ E AEEL       V +++++ +G+K A V N 
Sbjct: 220 KDHAKFSPVATASYRLLPDITLLEPVEGEAAEELSRCFSPGVIEVQEV-QGKKVARVANP 278

Query: 327 RACTLCRECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFTIESTGAIPPDVLFTEAVKI 386
           R  T  RE  R           EK    V L RV+DH+IF++ESTG +PPDVL +EA+K+
Sbjct: 279 RLDTFSREIFR----------NEKLKKVVRLARVRDHYIFSVESTGVLPPDVLVSEAIKV 328

Query: 387 LEDKCERVITEL 398
           L  KC R + EL
Sbjct: 329 LMGKCRRFLDEL 340


>RPA5_MOUSE (P52432) DNA-directed RNA polymerase I 40 kDa
           polypeptide (EC 2.7.7.6) (RPA40)
          Length = 346

 Score =  265 bits (676), Expect = 2e-70
 Identities = 157/372 (42%), Positives = 217/372 (58%), Gaps = 53/372 (14%)

Query: 42  LELQKTRVFCNLDAPQHTDTIQYSGAYAALGVDNSVRLDNFYQNFKVEVKRITDEEMEFD 101
           +E  +TRV       ++  T  + G YA  G D++   + F +NF+V V ++ ++ +EFD
Sbjct: 7   VEEMRTRVVLGEFGVRNVHTTDFPGNYA--GYDDAWDQNRFEKNFRVGVVQMDEDTLEFD 64

Query: 102 MIGIDPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHRLGLIPIDADPKLFEY 161
           M+GID A+ANAFRRIL+A VPTMA+E+V + NNTS+VQDE+L+HRLGLIPI ADP+LFEY
Sbjct: 65  MVGIDAAIANAFRRILLARVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEY 124

Query: 162 PDDAGGENNEKNTIVFKQHVRCEKGQPRLTVKSDT-------------LKWLP--NGSEL 206
            +    E  E +T+ F+  VRC +        SD              + W+P  N +++
Sbjct: 125 RNQGEEEGTEIDTLQFRLQVRCTRNPNAAKDSSDPNELYVNHKVYTRHMTWVPLGNQADV 184

Query: 207 IAEGTKSAADPAPKTFTTFNQKSLPKFSKDPAPYNLDVIVAKLGPGQEIELEAHAVKGIG 266
             EGT                           P + D+++A+L PGQEI+L  H VKGIG
Sbjct: 185 FPEGTIR-------------------------PVHDDILIAQLRPGQEIDLMMHCVKGIG 219

Query: 267 KTHAKWSPVATAWYRMLPEVVLTKDVKDELAEELVSKCPAKVFDIEDIGRGRKKAVVKNA 326
           K HAK+SPVATA YR+LP + L + V+ E AEEL       V ++E++ +G+K A V NA
Sbjct: 220 KDHAKFSPVATASYRLLPAITLLEPVEGEAAEELSQCFSPGVIEVEEV-QGKKVARVANA 278

Query: 327 RACTLCRECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFTIESTGAIPPDVLFTEAVKI 386
           R  T  RE  R           EK    V L RV+DH+IF++ESTG +PPDVL +EA+KI
Sbjct: 279 RLDTFSREIFRH----------EKLKKAVRLARVRDHYIFSVESTGVLPPDVLVSEAIKI 328

Query: 387 LEDKCERVITEL 398
           L  KC R + EL
Sbjct: 329 LMGKCRRFLDEL 340


>RPC5_SCHPO (O94616) DNA-directed RNA polymerases I and III 40 kDa
           polypeptide (EC 2.7.7.6) (AC40)
          Length = 348

 Score =  236 bits (601), Expect = 1e-61
 Identities = 143/375 (38%), Positives = 211/375 (56%), Gaps = 54/375 (14%)

Query: 42  LELQKTRVFCNLDAPQHTDTIQYSGAYAALGVDNSVRLDNFYQNFKVEVKRITDEEMEFD 101
           ++  +T +    D      ++ + G Y     DN   LD F +N KV +  +  E M F+
Sbjct: 4   VDRSRTEISVLSDRVTDVGSVDFPGYY--FDEDNIWDLDKFKKNLKVSITSLDQETMVFE 61

Query: 102 MIGIDPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHRLGLIPIDADP---KL 158
           + GID ++ANAFRRILIAE+PT+A E VYI NNTS++QDEVLSHR+GL+PI ADP   K 
Sbjct: 62  ISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHRIGLVPISADPDMFKW 121

Query: 159 FEYP-DDAGGENNEKNTIVFKQHVRC---------EKGQPRLTVKSDT----LKWLPNGS 204
           F++P       + + +T+VF  + +C         EK   RL V S+     L W P G 
Sbjct: 122 FQHPLPGQEATHTDYDTVVFSLNKKCEFNKNAATDEKDPKRLYVNSEVYSGDLIWKPQG- 180

Query: 205 ELIAEGTKSAADPAPKTFTTFNQKSLPKFSKDP-APYNLDVIVAKLGPGQEIELEAHAVK 263
                                  +   +F+ +P    N D++VAKL PGQEI+LEAHA+ 
Sbjct: 181 -----------------------RQEERFADNPIRVVNPDIVVAKLRPGQEIDLEAHAIL 217

Query: 264 GIGKTHAKWSPVATAWYRMLPEVVLTKDVKDELAEELVSKCPAKVFDIEDIGRGRKKAVV 323
           GIG+ HAK+SPVATA YR+LP + +   ++ E A +     P  V ++E+   G+K+A V
Sbjct: 218 GIGQDHAKFSPVATASYRLLPTIHILSPIEGEDAVKFQKCFPKGVIELEEGPDGKKQARV 277

Query: 324 KNARACTLCRECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFTIESTGAIPPDVLFTEA 383
            + R  T+ REC+R  +          + D+V L RV+DH++F++ESTG + PDVLF ++
Sbjct: 278 ADVRKDTVSRECLRHPE----------FADKVQLGRVRDHYLFSVESTGIMKPDVLFIKS 327

Query: 384 VKILEDKCERVITEL 398
           + +L+ KC  V + L
Sbjct: 328 IAVLKSKCLAVKSSL 342


>RPC5_YEAST (P07703) DNA-directed RNA polymerases I and III 40 kDa
           polypeptide (EC 2.7.7.6) (AC40) (C37)
          Length = 335

 Score =  216 bits (551), Expect = 6e-56
 Identities = 128/324 (39%), Positives = 194/324 (59%), Gaps = 30/324 (9%)

Query: 74  DNSVRLDNFYQNFKVEVKRITDEEMEFDMIGIDPAVANAFRRILIAEVPTMAIERVYIAN 133
           +N   ++ F ++F+V +  +   E  FD+I ID ++ANAFRRI+I+EVP++A E VY  N
Sbjct: 28  ENEWNVEKFKKDFEVNISSLDAREANFDLINIDTSIANAFRRIMISEVPSVAAEYVYFFN 87

Query: 134 NTSLVQDEVLSHRLGLIPIDADPKLFEY-----PDDAGGENNEKNTIVFKQHVRCEKGQP 188
           NTS++QDEVL+HR+GL+P+  DP +  +     PDD   +  ++NTIV   +V+C +  P
Sbjct: 88  NTSVIQDEVLAHRIGLVPLKVDPDMLTWVDSNLPDDE--KFTDENTIVLSLNVKCTR-NP 144

Query: 189 RLTVKSDTLKWLPNGSELIAEGTKSAADPAPKTFTTFNQKSLPKFSKDPAPYNLDVIVAK 248
                S   K L N + + A   K   +P  +  TTF     P    DP     D+++AK
Sbjct: 145 DAPKGSTDPKELYNNAHVYARDLK--FEPQGRQSTTF--ADCPVVPADP-----DILLAK 195

Query: 249 LGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEVVLTKDVKDELAEELVSKCPAKV 308
           L PGQEI L+AH + GIG  HAK+SPV+TA YR+LP++ + + +K E A       P  V
Sbjct: 196 LRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINILQPIKGESARRFQKCFPPGV 255

Query: 309 FDIEDIGRGRKKAVVKNARACTLCRECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFTI 368
             I++   G  +A VK+AR  T+ RE +R           E++ D+V L RV++HFIF +
Sbjct: 256 IGIDE---GSDEAYVKDARKDTVSREVLRY----------EEFADKVKLGRVRNHFIFNV 302

Query: 369 ESTGAIPPDVLFTEAVKILEDKCE 392
           ES GA+ P+ +F ++V+IL++K E
Sbjct: 303 ESAGAMTPEEIFFKSVRILKNKAE 326


>RP3A_ARATH (Q39211) DNA-directed RNA polymerase II 36 kDa
           polypeptide A (EC 2.7.7.6) (RNA polymerase II subunit 3)
          Length = 319

 Score =  147 bits (372), Expect = 4e-35
 Identities = 107/324 (33%), Positives = 171/324 (52%), Gaps = 45/324 (13%)

Query: 83  YQNF-KVEVKRITDEEMEFDMIGIDPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDE 141
           YQ F K++++ + D+  +F++   D ++ANA RR++I+EVPT+AI+ V I  N+S++ DE
Sbjct: 6   YQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSSVLNDE 65

Query: 142 VLSHRLGLIPIDADPKL---FEYPDDA--GGENNEKNTIVFKQHVRCEKGQPRLTVKSDT 196
            ++HRLGLIP+ ++  +   F    DA  G    E  ++ F+   +C   Q  L V S  
Sbjct: 66  FIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQ-TLDVTSRD 124

Query: 197 LKWLPNGSELIAEGTKSAADP--APKTFTTFNQKSLPKFSKDPAPYNLDVIVAKLGPGQE 254
           L                +ADP   P  FT  +       S   +  +  +I+ KL  GQE
Sbjct: 125 L---------------YSADPTVTPVDFTIDS-------SVSDSSEHKGIIIVKLRRGQE 162

Query: 255 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEVVLTKDVKDELAEE----LVSKCPAKVFD 310
           ++L A A KGIGK HAKWSP AT  +   P++++ +D+ D L++E    L+   P KVF 
Sbjct: 163 LKLRAIARKGIGKDHAKWSPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFG 222

Query: 311 IEDIGRGRKKAVVKNARACTLCRECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFTIES 370
           ++ + R   + VV +  A T   E I++A+   + G        + +    D FIFT+ES
Sbjct: 223 MDPVTR---QVVVVDPEAYTYDEEVIKKAEAMGKPG-------LIEISPKDDSFIFTVES 272

Query: 371 TGAIPPDVLFTEAVKILEDKCERV 394
           TGA+    L   A+ +L+ K + V
Sbjct: 273 TGAVKASQLVLNAIDLLKQKLDAV 296


>RP3B_ARATH (Q39212) DNA-directed RNA polymerase II 36 kDa
           polypeptide B (EC 2.7.7.6) (RNA polymerase II subunit 3)
          Length = 319

 Score =  143 bits (360), Expect = 9e-34
 Identities = 104/324 (32%), Positives = 167/324 (51%), Gaps = 45/324 (13%)

Query: 83  YQNFK-VEVKRITDEEMEFDMIGIDPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDE 141
           YQ F  V+++ + D+  +F++   D ++ANA RR++I+EVPTMAI  V I  N+S++ DE
Sbjct: 6   YQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSSVLNDE 65

Query: 142 VLSHRLGLIPIDADPKLF-----EYPDDAGGENNEKNTIVFKQHVRCEKGQPRLTVKSDT 196
            ++ RL LIP+ ++  +      +  D  G E+ E  ++ F    +C   Q  L V S  
Sbjct: 66  FIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQ-TLDVTSRD 124

Query: 197 LKWLPNGSELIAEGTKSAADP--APKTFTTFNQKSLPKFSKDPAPYNLDVIVAKLGPGQE 254
           L                +ADP   P  FT+         S   +  +  +I+AKL  GQE
Sbjct: 125 L---------------YSADPTVTPVDFTS-------NSSTSDSSEHKGIIIAKLRRGQE 162

Query: 255 IELEAHAVKGIGKTHAKWSPVATAWYRMLPEVVLTKDVKDELAEE----LVSKCPAKVFD 310
           ++L+A A KGIGK HAKWSP AT  Y   P++++ +++ + L +E    L+   P KVF 
Sbjct: 163 LKLKALARKGIGKDHAKWSPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFG 222

Query: 311 IEDIGRGRKKAVVKNARACTLCRECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFTIES 370
           I+ +     + VV +  A T   E I++A+   + G        + +    D F+FT+ES
Sbjct: 223 IDPV---TGQVVVVDPEAYTYDEEVIKKAEAMGKPG-------LIEIHPKHDSFVFTVES 272

Query: 371 TGAIPPDVLFTEAVKILEDKCERV 394
           TGA+    L   A+ IL+ K + +
Sbjct: 273 TGALKASQLVLNAIDILKQKLDAI 296


>RPOD_METTH (O26144) DNA-directed RNA polymerase subunit D (EC
           2.7.7.6)
          Length = 264

 Score =  134 bits (337), Expect = 4e-31
 Identities = 94/309 (30%), Positives = 143/309 (45%), Gaps = 52/309 (16%)

Query: 88  VEVKRITDEEMEFDMIGIDPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHRL 147
           + +K  TD EM F + G+     NA RRI + EVP +AIE V +  N + + DEVL+HRL
Sbjct: 3   IALKEKTDTEMVFVVSGVTVPFINAIRRICMMEVPKLAIEYVNMYRNDAKMFDEVLAHRL 62

Query: 148 GLIPIDADPKLFEYPDDAGGENNEKNTIVFKQHVRCEKGQPRLTVKSDTLKWLPNGSELI 207
           GL+P+ ADP+  E             ++   +   CE+     +V   +L     G  ++
Sbjct: 63  GLVPLAADPEFAE-------------SLKMPEECDCEEYCSECSV---SLTLRKKGPGVV 106

Query: 208 AEGTKSAADPAPKTFTTFNQKSLPKFSKDPAPYNLDVIVAKLGPGQEIELEAHAVKGIGK 267
             G   +  PA K                  P   D+ + KLG   E+ELEA A  G+G+
Sbjct: 107 YSGDLVSETPAVK------------------PVYPDIPLVKLGDDDELELEAVAQLGVGR 148

Query: 268 THAKWSPVATAWYRMLPEVVLTKDVKDELAEELVSKCPAKVFDIEDIGRGRKKAVVKNAR 327
            HAKW P     Y+  P +  ++D  + L  E +  CP  V     +G    K VV +  
Sbjct: 149 EHAKWEPTTACAYKYYPRIEFSEDCDECL--ECIEACPRDV-----LGEESGKPVVVDLE 201

Query: 328 ACTLCRECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFTIESTGAIPPDVLFTEAVKIL 387
            C++C+ C+R  D+             + +   +  FIF IE+ G++ P  +  +A  IL
Sbjct: 202 NCSMCKSCVRACDK-----------RAIDVGYEEGKFIFRIETDGSVDPKDVLLKACDIL 250

Query: 388 EDKCERVIT 396
            DK E+VIT
Sbjct: 251 RDKAEQVIT 259


>RPOD_ARCFU (O28002) DNA-directed RNA polymerase subunit D (EC
           2.7.7.6)
          Length = 264

 Score =  119 bits (298), Expect = 1e-26
 Identities = 87/310 (28%), Positives = 147/310 (47%), Gaps = 59/310 (19%)

Query: 87  KVEVKRITDEEMEFDMIGIDPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHR 146
           ++E+    D +++F +    PA+AN+FRR + AEVP MA++ V I  N+S   DEV++HR
Sbjct: 4   EIEILEEKDFKIKFILKNASPALANSFRRAMKAEVPAMAVDYVDIYLNSSYFYDEVIAHR 63

Query: 147 LGLIPIDADPKLFEYPDD--AGGENNEKNTIVFKQHVRCEKGQPRLTVKSDTLKWLPNGS 204
           L ++PI      F    +   GGE      I F+ +V                     G 
Sbjct: 64  LAMLPIKTYLDRFNMQSECSCGGEGCPNCQISFRLNV--------------------EGP 103

Query: 205 ELIAEGTKSAADPAPKTFTTFNQKSLPKFSKDPAPYNLDVIVAKLGPGQEIELEAHAVKG 264
           +++  G   + DP       F   ++P              V +L  GQ++ LEA A  G
Sbjct: 104 KVVYSGDFISDDPD----VVFAIDNIP--------------VLELFEGQQLMLEAVARLG 145

Query: 265 IGKTHAKWSPVATAWYRMLPEVVLTKDVKDELAEELVSKCPAKVFDIEDIGRGRKKAVVK 324
            G+ HAK+ PV+   Y+++PE+V+ ++       + +  CP  VF+     +   K  VK
Sbjct: 146 TGREHAKFQPVSVCVYKIIPEIVVNENCNG--CGDCIEACPRNVFE-----KDGDKVRVK 198

Query: 325 NARACTLCRECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFTIESTGAIPPDVLFTEAV 384
           N  AC++C EC+   +            + +S+    ++F+FT+E TGA+P   +  +A+
Sbjct: 199 NVMACSMCGECVEVCE-----------MNAISVNET-NNFLFTVEGTGALPVREVMKKAL 246

Query: 385 KILEDKCERV 394
           +IL  K E +
Sbjct: 247 EILRSKAEEM 256


>CNJC_TETTH (P16925) Conjugation stage-specific protein
          Length = 310

 Score =  115 bits (288), Expect = 2e-25
 Identities = 88/315 (27%), Positives = 152/315 (47%), Gaps = 31/315 (9%)

Query: 84  QNFKVEVKRITDEEMEFDMIGIDPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEVL 143
           +  K+ +  + + + EF +   D ++AN+ RRIL+AE+ T+AI  V +  NTS + DE +
Sbjct: 2   EGIKLTLTNLEEFKCEFTLENCDISLANSLRRILLAEIETIAIHNVKVYENTSSLPDEYI 61

Query: 144 SHRLGLIPIDA---DPKLFEYPDDAGGENNEKNTIVFKQHVRCEKGQPRLTVKSDTLKWL 200
           +HRLGLIP+++   D   + +  +  GE  ++ TI F   V     +  L V S  LK  
Sbjct: 62  AHRLGLIPLNSAKVDDYNYIWNCNCQGEC-DRCTIHFDLRVSNFTNEV-LEVTSLDLKQR 119

Query: 201 PNGSELIAEGTKSAADPAPKTFTTFNQKSLPKFSKDPAPYNLDVIVAKLGPGQEIELEAH 260
            + ++      + A  P  K ++    +   K         + + + KL  GQ+I  E  
Sbjct: 120 QDHTD------EDAVRPI-KVYSILRDEYGNK-------REVGIPIIKLSKGQQIHFECE 165

Query: 261 AVKGIGKTHAKWSPVATAWYRMLPEVVLTKDVKD---ELAEELVSKCPAKVFDIEDIGRG 317
           A KGIGK H+KW+PV  + + + PE++  +++++   E  + LV+ CP KVF I      
Sbjct: 166 AQKGIGKMHSKWNPVCISTFSVEPEIIFDQEIQNLDIEQKKALVNACPTKVFGINP---H 222

Query: 318 RKKAVVKNARACTLCRECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFTIESTGAIPPD 377
                V++   C  C EC+ +  E  +  +       + +   KD F F +E+TG + P 
Sbjct: 223 TNTLEVQDHMKCMYCEECVYKCAEDFQKPK------LIKIDHKKDKFFFKVETTGVMKPV 276

Query: 378 VLFTEAVKILEDKCE 392
            +       L  K +
Sbjct: 277 EVLRRGFSTLRQKLD 291


>RPOD_SULSO (P95989) DNA-directed RNA polymerase subunit D (EC
           2.7.7.6)
          Length = 265

 Score =  111 bits (277), Expect = 4e-24
 Identities = 85/306 (27%), Positives = 138/306 (44%), Gaps = 57/306 (18%)

Query: 95  DEEMEFDMIGIDPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHRLGLIPIDA 154
           D  ++    G      NA RR  +  VP MA++ VY   N S + DE+L+HRL LIP  +
Sbjct: 10  DTRIDLVFEGYPLEFVNAIRRASMLYVPIMAVDDVYFIENNSPLYDEILAHRLALIPFMS 69

Query: 155 DPKL--FEYPDDAGGENNEKNTIVFKQHVRCEKGQPRLTVKSDTLKWLPNGSELIAEGTK 212
           +  L  + +P++             +    CEK   ++ ++++     PN   +I     
Sbjct: 70  EEALDTYRWPEEC-----------IECTENCEKCYTKIYIEAEA----PNEPRMIYSKDI 114

Query: 213 SAADPAPKTFTTFNQKSLPKFSKDPAPYNLDVIVAKLGPGQEIELEAHAVKGIGKTHAKW 272
            + DP+                    P + D+ +  LG  Q+I LEA    G GK HAK+
Sbjct: 115 KSEDPS------------------VVPISGDIPIVLLGTNQKISLEARLRLGYGKEHAKF 156

Query: 273 SPVATAWYRMLPEVVLTKDVKDELAEELVSKCPAKVFDIEDIGRGRKKAVVKNARACTLC 332
            PV+ +  R  P+V +  +      E+ V+ CP  VF+++D      K  VKN  +CTLC
Sbjct: 157 IPVSLSVVRYYPKVEILAN-----CEKAVNVCPEGVFELKD-----GKLSVKNELSCTLC 206

Query: 333 RECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFTIESTGAIPPDVLFTEAVKILEDKCE 392
            EC+R  +              + +  V+D +I  IES G++ P+ +  EA K +  K E
Sbjct: 207 EECLRYCN------------GSIRISFVEDKYILEIESVGSLKPERILLEAGKSIIRKIE 254

Query: 393 RVITEL 398
            +  +L
Sbjct: 255 ELEKKL 260


>RPOD_AERPE (Q9YB53) DNA-directed RNA polymerase subunit D (EC
           2.7.7.6)
          Length = 290

 Score =  104 bits (260), Expect = 3e-22
 Identities = 81/308 (26%), Positives = 140/308 (45%), Gaps = 45/308 (14%)

Query: 88  VEVKRITDEEMEFDMIGIDPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHRL 147
           VEV  +    +   + G      NA RR ++++VPTMA++  YI +NT+ V DE+++HRL
Sbjct: 13  VEVVELDSLRVRLRIRGYPVVFVNAIRRTVLSDVPTMAVDYAYIFDNTTAVYDEMVAHRL 72

Query: 148 GLIPIDADPKLFEY--PDDAGGENNEKNTIVFKQHVRCEKGQPRLTVKSDTLKWLPNGSE 205
           GL+ +D++  + +Y  P++  G+   +     +  +  E     +  + +T ++      
Sbjct: 73  GLVVLDSNEAVEKYRRPEECAGKEPSEEDCFVEVSLEAE-----VDAEGETGRY------ 121

Query: 206 LIAEGTKSAADPAPKTFTTFNQKSLPKFSKDPAPYNLDVIVAKLGPGQEIELEAHAVKGI 265
            I  G  S +DP  K          P + + P  Y        + PGQ I ++A A  G 
Sbjct: 122 -ITAGDLSISDPQVK----------PVYPETPLIY--------VAPGQRIHVQAFARLGR 162

Query: 266 GKTHAKWSPVATAWYRMLPEVVLTKDVKDELAEELVSKCPAKVFDIEDIGRGRKKAVVKN 325
           GK H KWSP + +  R  P ++       +   E +S  P  V  ++  G+G    V++ 
Sbjct: 163 GKEHTKWSPASLSVLRYTPILIYDSSKAGDECLECLSAYPQVVEALKSGGKG--SLVLEG 220

Query: 326 ARACTLCRECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFTIESTGAIPPDVLFTEAVK 385
            R  +  R C   A  G            V +R    +    +ESTGA+ P+ +   A++
Sbjct: 221 LRRTSGLRYCAETACRG-----------AVEVRYDSSNLDLEVESTGALRPEKIVELAIR 269

Query: 386 ILEDKCER 393
            LE+K +R
Sbjct: 270 ELEEKVKR 277


>RPB3_HUMAN (P19387) DNA-directed RNA polymerase II 33 kDa
           polypeptide (EC 2.7.7.6) (RPB3) (RNA polymerase II
           subunit 3) (RPB33) (RPB31)
          Length = 275

 Score =  104 bits (260), Expect = 3e-22
 Identities = 71/208 (34%), Positives = 103/208 (49%), Gaps = 23/208 (11%)

Query: 88  VEVKRITDEEMEFDMIGIDPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHRL 147
           V +  +TDE ++F +   D AVAN+ RR+ IAEVP +AI+ V I  N+S++ DE ++HRL
Sbjct: 9   VRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDEFIAHRL 68

Query: 148 GLIPIDAD---PKLFEYPDDAGGENNEKNTIVFKQHVRCEKGQPRLTVKSDTLKWLPNGS 204
           GLIP+ +D    KL    D    E   + ++ F   VRC + Q R     D    L + S
Sbjct: 69  GLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRD----LISNS 124

Query: 205 ELIAEGTKSAADPAPKTFTTFNQKSLPKFSKDPAPYNLDVIVAKLGPGQEIELEAHAVKG 264
             +   T    D  P  +   +                D+++ KL  GQE+ L A+A KG
Sbjct: 125 PRVIPVTSRNRDNDPNDYVEQD----------------DILIVKLRKGQELRLRAYAKKG 168

Query: 265 IGKTHAKWSPVATAWYRMLPEVVLTKDV 292
            GK HAKW+P A   +   P+  L   V
Sbjct: 169 FGKEHAKWNPTAGVAFEYDPDNALRHTV 196


>RPOD_METKA (Q8TVB8) DNA-directed RNA polymerase subunit D (EC
           2.7.7.6)
          Length = 275

 Score =  102 bits (255), Expect = 1e-21
 Identities = 93/314 (29%), Positives = 135/314 (42%), Gaps = 64/314 (20%)

Query: 83  YQNFKVEVKRITDEEMEFDMIGIDPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEV 142
           Y   K +V+R T     F +        N  RR L   VPT+ IE V I  N + + DE+
Sbjct: 9   YDYRKADVERAT-----FIIEETSAEFVNTIRRALYTLVPTLRIEEVIIYENDTPMYDEM 63

Query: 143 LSHRLGLIPIDADP-KLFEYPD--DAGGENNEKNTIVFKQHVRCEKGQPRLTVKSDTLKW 199
           L+HRLGLIP+  D    FE PD  D GG+              CEK Q R          
Sbjct: 64  LAHRLGLIPLRVDDIDQFELPDLCDCGGKG-------------CEKCQVR---------- 100

Query: 200 LPNGSELIAEGTKSAADPAPKTFTTFNQKSLPKFSKDPAPYNLDVIVAKLGPGQEIELEA 259
               +EL  EG            T    + L     D  P   D ++ ++G  Q I LE 
Sbjct: 101 ----AELEVEGP-----------TKVYARDLKFDHPDVEPAFPDTLITEVGEDQRIRLEV 145

Query: 260 HAVKGIGKTHAKWSPVATAWYRMLPEVVLTKDVKDELAEELVSKCPAKVFDIEDIGRGRK 319
            AV G+G  HAKW PV+   Y+ LPE+ + +D   E  +++  +CP  +  IE+   G  
Sbjct: 146 IAVPGLGLEHAKWKPVSAVGYKGLPELEIDEDKLKE--KKITYECPQGIIRIEN---GEV 200

Query: 320 KAVVKN-ARACTLCRECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFTIESTGAIPPDV 378
             + ++    C + +E  RE D              V +R   D F+F +E+ G++  D 
Sbjct: 201 VHIDEDRLPECRMYKEYERETD------------GAVRVRLRDDAFVFNVETDGSMSLDT 248

Query: 379 LFTEAVKILEDKCE 392
              +A+  +E K E
Sbjct: 249 AILKALDAIEHKLE 262


>RPOD_SULTO (Q96YW0) DNA-directed RNA polymerase subunit D (EC
           2.7.7.6)
          Length = 264

 Score =  102 bits (254), Expect = 2e-21
 Identities = 86/289 (29%), Positives = 126/289 (42%), Gaps = 58/289 (20%)

Query: 109 VANAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHRLGLIPIDADPKLFEY-PDDAGG 167
           + N+ RR  I  VP MA++ VY   N S + DE+L+HRL +IP  +D  L  Y P +   
Sbjct: 24  LVNSIRRASILYVPVMAVDEVYFIENNSPLYDEILAHRLAMIPFSSDEALDHYRPPEECA 83

Query: 168 ENNEKNTIVFKQHVRCEKGQPRLTVKSDTLKWLPNGSELIAEGTKSAADPAPKTFTTFNQ 227
           E  E           C+    R+ +                       D       T   
Sbjct: 84  ECKEN----------CDGCYARVYL-----------------------DVGANEGETVMV 110

Query: 228 KSLPKFSKDPA--PYNLDVIVAKLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPE 285
            S    + DPA  P + ++ +  LGP Q++ LEA    G GK H K+SPV+ A  R  P 
Sbjct: 111 YSRDLKTDDPAIVPISGNIPIVLLGPKQKVTLEARLRLGYGKEHIKFSPVSIAVVRYYPH 170

Query: 286 VVLTKDVKDELAEELVSKCPAKVFDIEDIGRGRKKAVVKNARACTLCRECIREADEGEEG 345
           V    +VK    E+    CP  VF +E+      K  VKN  ACTLC ECI+  +     
Sbjct: 171 V----EVKGN-CEKAFEVCPEGVFGMEN-----GKLFVKNEVACTLCEECIKYCE----- 215

Query: 346 GEGEKWTDRVSLRRVKDHFIFTIESTGAIPPDVLFTEAVKILEDKCERV 394
                  + + +  V++ +I  IES G++ P+ +  EA K L  K  ++
Sbjct: 216 -------NNIFISAVENKYILEIESVGSLKPERILIEAGKSLLRKLNQL 257


>RPOD_SULAC (P39471) DNA-directed RNA polymerase subunit D (EC
           2.7.7.6)
          Length = 264

 Score =  101 bits (252), Expect = 3e-21
 Identities = 82/290 (28%), Positives = 126/290 (43%), Gaps = 57/290 (19%)

Query: 111 NAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHRLGLIPIDADPKLFEY--PDDAGGE 168
           N+ RR  I  VP MA++ VY   N S + DE+L+HRL L+P  +D  L  Y  P++    
Sbjct: 26  NSIRRASILYVPVMAVDEVYFIENNSPLYDEILAHRLALVPFVSDEALEHYRPPEECAEC 85

Query: 169 NNEKNTIVFKQHVRCEKGQPRLTVKSDTLKWLPNGSELIAEGTKSAADPAPKTFTTFNQK 228
               +    + ++  E     L + S  LK   +  ++I                     
Sbjct: 86  KENCDGCYNRVYLDVEAKDQSLMIYSRDLK---SEDQMIT-------------------- 122

Query: 229 SLPKFSKDPAPYNLDVIVAKLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEVVL 288
                     P +  + +  LG  Q+I LEA    G GK H K+SPV+ +  R  P+V +
Sbjct: 123 ----------PVSGAIPIVLLGSKQKISLEARLRLGYGKEHIKYSPVSVSIVRYYPKVTV 172

Query: 289 TKDVKDELAEELVSKCPAKVFDIEDIGRGRKKAVVKNARACTLCRECIREADEGEEGGEG 348
             +      E+ V  CP  VF +E+      K VVKN  +C LC EC++           
Sbjct: 173 LGN-----CEKAVEVCPEGVFAMEN-----NKLVVKNELSCILCEECLKYC--------- 213

Query: 349 EKWTDRVSLRRVKDHFIFTIESTGAIPPDVLFTEAVKILEDKCERVITEL 398
                 VS+  V++ FI  IES G++ P+ +  EA K L  K   + ++L
Sbjct: 214 ---AGSVSIESVENKFILEIESVGSLKPERILIEASKSLLRKLSELKSKL 260


>RPB3_MOUSE (P97760) DNA-directed RNA polymerase II 33 kDa
           polypeptide (EC 2.7.7.6) (RPB3) (RNA polymerase II
           subunit 3) (RPB33) (RPB31)
          Length = 275

 Score = 98.6 bits (244), Expect = 2e-20
 Identities = 66/201 (32%), Positives = 99/201 (48%), Gaps = 23/201 (11%)

Query: 88  VEVKRITDEEMEFDMIGIDPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHRL 147
           V +  +T+E ++F +   D AVAN+ RR+ IAEVP +AI+ V I  N+S++ DE ++HRL
Sbjct: 9   VRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDGNSSVLHDEFIAHRL 68

Query: 148 GLIPIDAD---PKLFEYPDDAGGENNEKNTIVFKQHVRCEKGQPRLTVKSDTLKWLPNGS 204
           GLIP+ +D    KL    D    E   + ++ F   VRC + Q R     D    L + S
Sbjct: 69  GLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQTRHVTSRD----LISNS 124

Query: 205 ELIAEGTKSAADPAPKTFTTFNQKSLPKFSKDPAPYNLDVIVAKLGPGQEIELEAHAVKG 264
             +   T    D  P  +   +                D+++ KL  GQE+ L A+  K 
Sbjct: 125 PRVIPVTSRNRDNDPNDYVEQD----------------DILIVKLRKGQELRLRAYVKKR 168

Query: 265 IGKTHAKWSPVATAWYRMLPE 285
            GK HAKW+P A   +   P+
Sbjct: 169 SGKEHAKWNPTAGVAFEYDPD 189


>RPOD_PYRAE (Q8ZYQ3) DNA-directed RNA polymerase subunit D (EC
           2.7.7.6)
          Length = 260

 Score = 97.1 bits (240), Expect = 7e-20
 Identities = 84/296 (28%), Positives = 125/296 (41%), Gaps = 82/296 (27%)

Query: 104 GIDPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHRLGLIPIDAD-PKLFEYP 162
           G+ P++ N+ RR++I+E+P MAI+ V + NNTS++ DE+L+HRLGLIP+      L  Y 
Sbjct: 20  GVPPSLVNSLRRVIISELPVMAIDNVVVVNNTSVMYDEMLAHRLGLIPLTTPLQSLPPYE 79

Query: 163 DDAGG--ENNEKNTIVFKQHVRCEKGQPRLTVKSDTLKWLPNGSELIAEGTKSAADPAPK 220
           D   G  + +E +T              RLT+            ++ AEG          
Sbjct: 80  DCVSGLADPSECST--------------RLTL------------QVTAEGD--------- 104

Query: 221 TFTTFNQKSLPKFSKDPAPYNLDVIVAKLGPGQEIELEAHAVKGIGKTHAKWSPVATAWY 280
             TT     L     D  P   D+ + KL  GQ I LEA+A  G+ K HAKW   ATA Y
Sbjct: 105 --TTIYSGDLASDRPDVVPVYKDIPIVKLVKGQSIVLEAYAKLGVAKDHAKWQ-AATASY 161

Query: 281 RMLPEVVLTKDVKDELAEELVSKCPAKVFDIEDIGRGRKKAVVKNARACTLCRECIREAD 340
              P                                   K VVK+     +C+E  R+ +
Sbjct: 162 YYYP-----------------------------------KVVVKSENCREMCKEICRQLE 186

Query: 341 EGEEGGEGEKWT------DRVSLRRVKDHFIFTIESTGAIPPDVLFTEAVKILEDK 390
              E    + WT      + + +   K+ ++F +ES G    +    EA +IL+ K
Sbjct: 187 NPIECSFNKAWTCKDLCKEGLEVTWDKNKYVFWVESFGNYDVNTALREAFRILKRK 242


>RPB3_SCHPO (P37382) DNA-directed RNA polymerase II 33 kDa
           polypeptide (EC 2.7.7.6) (RNA polymerase II subunit 3)
          Length = 297

 Score = 94.4 bits (233), Expect = 5e-19
 Identities = 82/313 (26%), Positives = 140/313 (44%), Gaps = 58/313 (18%)

Query: 88  VEVKRITDEEMEFDMIGIDPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHRL 147
           + ++ I+   ++F +     AVAN+ RR+++AE+PT+AI+ V I  NTS++ DE L+HRL
Sbjct: 7   ITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRL 66

Query: 148 GLIPIDADPKLFEYPDDAGGENNEKNTIVFKQHVRCEKGQPRLTVKSDTLKWLPNGSELI 207
           G+IP+D+     + P   G E        + ++  C++  P+ +V+      L   ++  
Sbjct: 67  GMIPLDSSN--IDEPPPVGLE--------YTRNCDCDQYCPKCSVE------LFLNAKCT 110

Query: 208 AEGTKS--AADPAPKTFTTFNQKSLPKFSKDPAPYNLDVIVAKLGPGQEIELEAHAVKGI 265
            EGT    A D    + ++     L        P +   ++ KL   QEI L   A KGI
Sbjct: 111 GEGTMEIYARDLVVSSNSSLGHPILAD------PKSRGPLICKLRKEQEISLRCIAKKGI 164

Query: 266 GKTHAKWSPVATAWYRMLPEVVLTKDVKDELAEELVSKCPAKVFDIEDIGRGRKKAVVKN 325
            K HAKWSP +   +   P   L +        +  ++ P                    
Sbjct: 165 AKEHAKWSPTSAVAFEYDPWNKL-QHTDYWFENDADAEWPKS------------------ 205

Query: 326 ARACTLCRECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFTIESTGAIPPDVLFTEAVK 385
                      + AD  E   EGE +  +   RR    F   +ES G+IPP+ +  + ++
Sbjct: 206 -----------KNADWEEPPREGEPFNFQEEPRR----FYMDVESVGSIPPNEIMVQGLR 250

Query: 386 ILEDKCERVITEL 398
           IL++K   ++ +L
Sbjct: 251 ILQEKLAVLVRDL 263


>RPB3_YEAST (P16370) DNA-directed RNA polymerase II 45 kDa
           polypeptide (EC 2.7.7.6) (B44.5)
          Length = 318

 Score = 87.0 bits (214), Expect = 7e-17
 Identities = 79/317 (24%), Positives = 133/317 (41%), Gaps = 64/317 (20%)

Query: 87  KVEVKRITDEEMEFDMIGIDPAVANAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHR 146
           +V+++  + + ++F +  +D A+AN+ RR++IAE+PT+AI+ V +  NT+++ DE ++HR
Sbjct: 7   QVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAHR 66

Query: 147 LGLIPIDA-DPKLFEYPDDAGGENNEKNTIVFKQHVRCEKGQPRLTVKSDTLKWLPNGSE 205
           LGLIP+ + D +  EY  D   E++            C+K    LT++            
Sbjct: 67  LGLIPLQSMDIEQLEYSRDCFCEDH------------CDKCSVVLTLQ------------ 102

Query: 206 LIAEGTKSAADPAPKTFTTFNQKSLPKFSKDPAPYNLD---VIVAKLGPGQEIELEAHAV 262
             A G   +               + +    P   + +   V++ KL  GQE++L   A 
Sbjct: 103 --AFGESESTTNVYSKDLVIVSNLMGRNIGHPIIQDKEGNGVLICKLRKGQELKLTCVAK 160

Query: 263 KGIGKTHAKWSPVATAWYRMLPEVVLTKDVKDELAEELVSKCPAKVFDIEDIGRGRKKAV 322
           KGI K HAKW P A   +   P   L     D   E+                       
Sbjct: 161 KGIAKEHAKWGPAAAIEFEYDPWNKLKH--TDYWYEQ----------------------- 195

Query: 323 VKNARACTLCRECIREADEGEEGGEGEKWTDRVSLRRVKDHFIFTIESTGAIPPDVLFTE 382
             +A+     + C  E D   EG       D    +   D F   +ES G+IP D +   
Sbjct: 196 -DSAKEWPQSKNCEYE-DPPNEG-------DPFDYKAQADTFYMNVESVGSIPVDQVVVR 246

Query: 383 AVKILEDKCERVITELS 399
            +  L+ K   ++  L+
Sbjct: 247 GIDTLQKKVASILLALT 263


>RPOD_METJA (Q57648) DNA-directed RNA polymerase subunit D (EC
           2.7.7.6)
          Length = 191

 Score = 85.1 bits (209), Expect = 3e-16
 Identities = 63/176 (35%), Positives = 81/176 (45%), Gaps = 53/176 (30%)

Query: 110 ANAFRRILIAEVPTMAIERVYIANNTSLVQDEVLSHRLGLIPIDADPKLFEYPDDAGGEN 169
           +NA RRI+I+EVPT AIE VYI  N+S + DE+L+HRLGLIPI   P L           
Sbjct: 27  SNAIRRIMISEVPTFAIEDVYIYENSSSMDDEILAHRLGLIPIKGKPLL----------E 76

Query: 170 NEKNTIVFKQHVRCEKGQPRLTVKSDTLKWLPNGSELIAEGTKSAADPAPKTFTTFNQKS 229
           NE  T   ++   C       TV S  LK   NG                        K+
Sbjct: 77  NEVITFTLEKEGPC-------TVYSSDLK-SENGEVAF--------------------KN 108

Query: 230 LPKFSKDPAPYNLDVIVAKLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPE 285
           +P              + KLG GQ I++E  A+ GIGK HAKW P   A Y+ + +
Sbjct: 109 IP--------------IVKLGKGQRIQIECEAIPGIGKVHAKWQP-CNAVYKQIAD 149


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.315    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,628,318
Number of Sequences: 164201
Number of extensions: 2218590
Number of successful extensions: 5222
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 5123
Number of HSP's gapped (non-prelim): 66
length of query: 399
length of database: 59,974,054
effective HSP length: 112
effective length of query: 287
effective length of database: 41,583,542
effective search space: 11934476554
effective search space used: 11934476554
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 67 (30.4 bits)