BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146743.14 + phase: 0
(720 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RECO_STAAW (Q8NWB5) DNA repair protein recO (Recombination prote... 33 3.4
RECO_STAAN (P65986) DNA repair protein recO (Recombination prote... 33 3.4
RECO_STAAM (P65985) DNA repair protein recO (Recombination prote... 33 3.4
NCO2_HUMAN (Q15596) Nuclear receptor coactivator 2 (NCoA-2) (Tra... 33 3.4
NCO2_RAT (Q9WUI9) Nuclear receptor coactivator 2 (NCoA-2) (Trans... 32 4.5
NCO1_HUMAN (Q15788) Nuclear receptor coactivator 1 (EC 2.3.1.48)... 32 4.5
MY2A_SACCA (Q875X3) Myosin-2A (Class V unconventional myosin MYO... 32 5.9
HEM1_DESVM (Q9KW52) Glutamyl-tRNA reductase (EC 1.2.1.-) (GluTR) 32 5.9
RECF_STRPY (P49999) DNA replication and repair protein recF 32 7.7
RECF_STRP8 (Q8NYZ4) DNA replication and repair protein recF 32 7.7
RECF_STRP3 (Q8K5G2) DNA replication and repair protein recF 32 7.7
HEMA_NDVJ (P35742) Hemagglutinin-neuraminidase (EC 3.2.1.18) 32 7.7
SYFB_NEIMB (Q9K089) Phenylalanyl-tRNA synthetase beta chain (EC ... 31 10.0
SYFB_NEIMA (Q9JVA0) Phenylalanyl-tRNA synthetase beta chain (EC ... 31 10.0
>RECO_STAAW (Q8NWB5) DNA repair protein recO (Recombination protein
O)
Length = 250
Score = 32.7 bits (73), Expect = 3.4
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 67 IVAENLQGPRFVFVNLDAGMASQLLTIKLLERLKSRFGNLYTEENVAISGIHTHAGPGGY 126
I N Q +FV +++G ++QL+++ ++ + RFG + A+SG T A GY
Sbjct: 107 IAPYNYQLLQFVLEKIESGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQADLIGY 166
>RECO_STAAN (P65986) DNA repair protein recO (Recombination protein
O)
Length = 250
Score = 32.7 bits (73), Expect = 3.4
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 67 IVAENLQGPRFVFVNLDAGMASQLLTIKLLERLKSRFGNLYTEENVAISGIHTHAGPGGY 126
I N Q +FV +++G ++QL+++ ++ + RFG + A+SG T A GY
Sbjct: 107 IAPYNYQLLQFVLEKIESGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQADLIGY 166
>RECO_STAAM (P65985) DNA repair protein recO (Recombination protein
O)
Length = 250
Score = 32.7 bits (73), Expect = 3.4
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 67 IVAENLQGPRFVFVNLDAGMASQLLTIKLLERLKSRFGNLYTEENVAISGIHTHAGPGGY 126
I N Q +FV +++G ++QL+++ ++ + RFG + A+SG T A GY
Sbjct: 107 IAPYNYQLLQFVLEKIESGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQADLIGY 166
>NCO2_HUMAN (Q15596) Nuclear receptor coactivator 2 (NCoA-2)
(Transcriptional intermediary factor 2)
Length = 1464
Score = 32.7 bits (73), Expect = 3.4
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 214 ASGKSKGSFSWFATHGTSMSNNNKLISGDNKDIGELVQIAQLIKATGGKDCNEKSSQAS 272
++G GS S THGTS+ +K++ +D V +A+L GKD +++SS +
Sbjct: 668 STGSLPGSGS---THGTSLKEKHKILHRLLQDSSSPVDLAKLTAEATGKDLSQESSSTA 723
>NCO2_RAT (Q9WUI9) Nuclear receptor coactivator 2 (NCoA-2)
(Transcriptional intermediary factor 2)
Length = 1465
Score = 32.3 bits (72), Expect = 4.5
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 226 ATHGTSMSNNNKLISGDNKDIGELVQIAQLIKATGGKDCNEKSS 269
+THGTS+ +K++ +D V +A+L GK+ N++SS
Sbjct: 677 STHGTSLKEKHKILHRLLQDSSSPVDLAKLTAEATGKELNQESS 720
>NCO1_HUMAN (Q15788) Nuclear receptor coactivator 1 (EC 2.3.1.48)
(NCoA-1) (Steroid receptor coactivator-1) (SRC-1)
(RIP160) (Hin-2 protein)
Length = 1441
Score = 32.3 bits (72), Expect = 4.5
Identities = 47/212 (22%), Positives = 84/212 (39%), Gaps = 34/212 (16%)
Query: 174 VKEASINRSPSAYLLNPAEERSRYPSNVDTQMTLLKFVDSASGKSKGSFSWFATHGTSMS 233
+++ S SPS + PA+ S+ N + TL + + S + S G +
Sbjct: 561 LRQMSSQNSPSRLNIQPAKAESK--DNKEIASTLNEMIQSDNSSSDGK----PLDSGLLH 614
Query: 234 NNNKLISGDNKDIGELVQIAQLIKATGGKDCNEKSSQASKVRKNDGSLFVGAFCQSNVGD 293
NN++L GD+K ++ QL+ T + Q + D S C
Sbjct: 615 NNDRLSDGDSKYSQTSHKLVQLLTTT--------AEQQLRHADIDTSCKDVLSCTGTSNS 666
Query: 294 VSPNVLGAFCIDSGKPCDFNHSSCNG-NDLLCVGRGPGYPNEILSTKIIGERQFRSAVEL 352
S N SG C +HSS + +L G P++I + + +++ +
Sbjct: 667 ASAN-------SSGGSCPSSHSSLTARHKILHRLLQEGSPSDITTLSVEPDKKDSA---- 715
Query: 353 FGSASEELTGKIDYRHVYLNFTNIEVELDNKK 384
S S +TG++ ++I++ELD K
Sbjct: 716 --STSVSVTGQVQ------GNSSIKLELDASK 739
>MY2A_SACCA (Q875X3) Myosin-2A (Class V unconventional myosin MYO2A)
(Type V myosin heavy chain MYO2A) (Myosin V MYO2A)
Length = 1567
Score = 32.0 bits (71), Expect = 5.9
Identities = 37/164 (22%), Positives = 62/164 (37%), Gaps = 20/164 (12%)
Query: 120 HAGPGGYLQYVVYSVTSLGFV-TQSFDAIANAVEQSIIQAHNNLKPGSIFINTGDVKEAS 178
HA Y Q +Y+ + + + T FD + Q +IQA++ + G I
Sbjct: 88 HAIKQRYSQLNIYTYSGIVLIATNPFDRMDQLYSQDMIQAYSGKRRGEI----------- 136
Query: 179 INRSPSAYLLNPAEERSRYPSNVDTQMTLLKFVDSASGKSKGSFSWFATHGTSMSNNNKL 238
+L AEE R N T++ +S +GK+ S + + S N
Sbjct: 137 -----EPHLFAIAEEAYRLMKNDKQNQTIVVSGESGAGKTV-SAKYIMRYFASCDEENSS 190
Query: 239 ISGDNKDIGELVQIAQLIKATGGKDCNEKSSQASKVRKNDGSLF 282
G+ + E+ + + I AT E A R ++ S F
Sbjct: 191 NMGNLQHTAEMSETEERILAT--NPIMEAFGNAKTTRNDNSSRF 232
>HEM1_DESVM (Q9KW52) Glutamyl-tRNA reductase (EC 1.2.1.-) (GluTR)
Length = 435
Score = 32.0 bits (71), Expect = 5.9
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 315 SSCNGNDLLCVGRGPGYPNEILSTKIIGERQFRSAVELF 353
S+CN +++ VG GPG P +L Q RS +E F
Sbjct: 42 STCNRVEIMAVGNGPGVPARVLDCWAAARGQKRSDLEPF 80
>RECF_STRPY (P49999) DNA replication and repair protein recF
Length = 368
Score = 31.6 bits (70), Expect = 7.7
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 508 ETHVVIAGLTNTYSQYIATFEEYHQQRYEAASTLYGPH--TLSAYIQEFN 555
++ VV TN Y Q++ E+ HQ+ + +T GPH L+ YI N
Sbjct: 223 QSSVVFDKKTNIYQQFLHQLEKNHQKDFFRKNTSVGPHRDELAFYINGMN 272
>RECF_STRP8 (Q8NYZ4) DNA replication and repair protein recF
Length = 368
Score = 31.6 bits (70), Expect = 7.7
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 508 ETHVVIAGLTNTYSQYIATFEEYHQQRYEAASTLYGPH--TLSAYIQEFN 555
++ VV TN Y Q++ E+ HQ+ + +T GPH L+ YI N
Sbjct: 223 QSSVVFDKKTNIYQQFLHQLEKNHQKDFFRKNTSVGPHRDDLAFYINGMN 272
>RECF_STRP3 (Q8K5G2) DNA replication and repair protein recF
Length = 368
Score = 31.6 bits (70), Expect = 7.7
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 508 ETHVVIAGLTNTYSQYIATFEEYHQQRYEAASTLYGPH--TLSAYIQEFN 555
++ VV TN Y Q++ E+ HQ+ + +T GPH L+ YI N
Sbjct: 223 QSSVVFDKKTNIYQQFLHQLEKNHQKDFFRKNTSVGPHRDDLAFYINGMN 272
>HEMA_NDVJ (P35742) Hemagglutinin-neuraminidase (EC 3.2.1.18)
Length = 571
Score = 31.6 bits (70), Expect = 7.7
Identities = 34/137 (24%), Positives = 55/137 (39%), Gaps = 22/137 (16%)
Query: 478 PGEFTTMAGRRLREAVKETLISNSNGE-------------FNNETHVVIAGLTNTY---- 520
PG F G+R+++A+ +S S GE E V+ G ++
Sbjct: 361 PGRF---GGKRVQQAILSIKVSTSLGEDPVLTVPPNTITLMGAEGRVLTVGTSHFLYQRG 417
Query: 521 SQYIATFEEYHQQRYEAASTLYGPHTLSAYIQEFNKLAQAMAK--GDKIYGNGTSPPDLL 578
S Y + Y Y+ +TL+ P+T +A+ + + QA A+ I G T P L+
Sbjct: 418 SSYFSPALLYPMTVYQQTATLHSPYTFNAFTRPGSVPCQASARCPNSCITGVYTDPYPLV 477
Query: 579 SVQKSFLLDPFGDTTPD 595
+ L FG D
Sbjct: 478 FHRNHTLRGVFGTMLDD 494
>SYFB_NEIMB (Q9K089) Phenylalanyl-tRNA synthetase beta chain (EC
6.1.1.20) (Phenylalanine--tRNA ligase beta chain)
(PheRS)
Length = 787
Score = 31.2 bits (69), Expect = 10.0
Identities = 27/82 (32%), Positives = 35/82 (41%), Gaps = 5/82 (6%)
Query: 358 EELTGKIDYRHVYLNFTNIEVELDNKKV--VKTCPAALGPGFAAGTTDGPGVFGFQQGDP 415
E+ GK Y ++E L NK V VKT AL PG AA V GF
Sbjct: 600 EQWGGKTRNADFYDIKADVENLLKNKAVEFVKTGHPALHPGRAANIVSDGKVIGFV---G 656
Query: 416 EISPFWKNVRDFLKEPSQYQVD 437
E+ P W D + P +++D
Sbjct: 657 ELHPKWLQKYDLPQAPLVFEID 678
>SYFB_NEIMA (Q9JVA0) Phenylalanyl-tRNA synthetase beta chain (EC
6.1.1.20) (Phenylalanine--tRNA ligase beta chain)
(PheRS)
Length = 787
Score = 31.2 bits (69), Expect = 10.0
Identities = 29/88 (32%), Positives = 39/88 (43%), Gaps = 6/88 (6%)
Query: 353 FGSAS-EELTGKIDYRHVYLNFTNIEVELDNKKV--VKTCPAALGPGFAAGTTDGPGVFG 409
+G+A E+ GK Y ++E L NK V VKT AL PG AA V G
Sbjct: 594 YGAAMPEQWGGKTRNADFYDIKADVENLLKNKAVEFVKTGYPALHPGRAANIVSDGKVIG 653
Query: 410 FQQGDPEISPFWKNVRDFLKEPSQYQVD 437
F E+ P W D + P +++D
Sbjct: 654 FV---GELHPKWLQKYDLPQAPLVFEID 678
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.317 0.136 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,675,784
Number of Sequences: 164201
Number of extensions: 4163743
Number of successful extensions: 8757
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 8749
Number of HSP's gapped (non-prelim): 15
length of query: 720
length of database: 59,974,054
effective HSP length: 118
effective length of query: 602
effective length of database: 40,598,336
effective search space: 24440198272
effective search space used: 24440198272
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 69 (31.2 bits)
Medicago: description of AC146743.14