BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146722.13 + phase: 0
(142 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NQRF_HAEIN (O05012) Na(+)-translocating NADH-quinone reductase s... 35 0.041
NQRF_PASMU (Q9CLA6) Na(+)-translocating NADH-quinone reductase s... 35 0.070
PDC2_CANAL (O60035) PDC2 protein 32 0.45
TRE1_HUMAN (Q9NSU2) Three prime repair exonuclease 1 (EC 3.1.11.... 31 0.77
NQRF_YERPE (Q8ZBZ5) Na(+)-translocating NADH-quinone reductase s... 31 0.77
NQRF_PSEAE (Q9HZL1) Na(+)-translocating NADH-quinone reductase s... 31 1.0
ZAR1_RAT (Q7TSX9) Zygote arrest 1 (Oocyte-specific maternal effe... 29 2.9
NQRF_VIBVU (Q8DBJ1) Na(+)-translocating NADH-quinone reductase s... 29 2.9
NQRF_VIBPA (Q9LCJ0) Na(+)-translocating NADH-quinone reductase s... 29 2.9
NQRF_VIBCH (Q9X4Q8) Na(+)-translocating NADH-quinone reductase s... 29 2.9
TERP_PSESP (P33007) Terpredoxin (TDX) 29 3.8
CMC1_CAEEL (Q21153) Probable calcium-binding mitochondrial carri... 29 3.8
NQRF_VIBAL (Q56584) Na(+)-translocating NADH-quinone reductase s... 28 5.0
YJ13_SCHPO (O13681) Hypothetical protein C737.03c in chromosome III 28 6.5
NQRF_NEIMB (Q9K0M8) Na(+)-translocating NADH-quinone reductase s... 28 6.5
NQRF_NEIMA (Q9JVQ3) Na(+)-translocating NADH-quinone reductase s... 28 6.5
CDB2_HUMAN (Q9Y5E7) Protocadherin beta 2 precursor (PCDH-beta2) 28 6.5
ACPS_ECOL6 (Q8FF19) Holo-[acyl-carrier-protein] synthase (EC 2.7... 28 6.5
ACPS_ECO57 (Q8XA39) Holo-[acyl-carrier-protein] synthase (EC 2.7... 28 6.5
RIP1_RAT (Q9JIR0) Peripheral-type benzodiazepine receptor-associ... 28 8.5
>NQRF_HAEIN (O05012) Na(+)-translocating NADH-quinone reductase
subunit F (EC 1.6.5.-) (Na(+)-translocating NQR subunit
F) (Na(+)-NQR subunit F) (NQR complex subunit F) (NQR-1
subunit F)
Length = 411
Score = 35.4 bits (80), Expect = 0.041
Identities = 22/65 (33%), Positives = 28/65 (42%), Gaps = 21/65 (32%)
Query: 98 CGGGGSCGTCIV--------------------EKPESWRLACQ-TIVGNKENSGKVVVQR 136
CGGGGSCG CIV E E +RLACQ + GN E +
Sbjct: 73 CGGGGSCGQCIVKVKNGGGEILPTELSHINKREAKEGYRLACQVNVKGNMEVELPEEIFG 132
Query: 137 IPQWK 141
+ +W+
Sbjct: 133 VKKWE 137
>NQRF_PASMU (Q9CLA6) Na(+)-translocating NADH-quinone reductase
subunit F (EC 1.6.5.-) (Na(+)-translocating NQR subunit
F) (Na(+)-NQR subunit F) (NQR complex subunit F) (NQR-1
subunit F)
Length = 407
Score = 34.7 bits (78), Expect = 0.070
Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 23/55 (41%)
Query: 98 CGGGGSCGTCIV--------------------EKPESWRLACQTIVGNKENSGKV 132
CGGGGSCG CIV E E +RL+CQ N +NS KV
Sbjct: 69 CGGGGSCGQCIVKVTEGGGDILPTELSHISKREAKEGYRLSCQV---NVKNSMKV 120
>PDC2_CANAL (O60035) PDC2 protein
Length = 836
Score = 32.0 bits (71), Expect = 0.45
Identities = 24/89 (26%), Positives = 38/89 (41%), Gaps = 5/89 (5%)
Query: 4 MNNIFTPFPLTAGNRNPTIYFPRRR---PNSVCLVANSPESPSPPPEIELEFVGPKPEGD 60
++NI +P + G NP + F N L NS SP PPP + + P P
Sbjct: 707 ISNIESPIA-SGGLTNPNVQFGNGAGSFDNQTPLFMNSLTSPPPPPPVPVPVPVPVPSVP 765
Query: 61 GSFPVDKV-KAISGEKLMRSIMSDNKIDL 88
P + +S + +R+ MS +D+
Sbjct: 766 SQVPATSFPQDVSSSRAVRAPMSTAAVDV 794
>TRE1_HUMAN (Q9NSU2) Three prime repair exonuclease 1 (EC 3.1.11.2)
(3'-5' exonuclease TREX1) (DNase III)
Length = 369
Score = 31.2 bits (69), Expect = 0.77
Identities = 20/54 (37%), Positives = 27/54 (49%), Gaps = 1/54 (1%)
Query: 19 NPTIYFPRRRPNSVCLVA-NSPESPSPPPEIELEFVGPKPEGDGSFPVDKVKAI 71
N + F RR+P CLVA N P + EL +G DG+F VD + A+
Sbjct: 161 NLLLAFLRRQPQPWCLVAHNGDRYDFPLLQAELAMLGLTSALDGAFCVDSITAL 214
>NQRF_YERPE (Q8ZBZ5) Na(+)-translocating NADH-quinone reductase
subunit F (EC 1.6.5.-) (Na(+)-translocating NQR subunit
F) (Na(+)-NQR subunit F) (NQR complex subunit F) (NQR-1
subunit F)
Length = 407
Score = 31.2 bits (69), Expect = 0.77
Identities = 21/72 (29%), Positives = 31/72 (42%), Gaps = 22/72 (30%)
Query: 74 EKLMRSIMSDNKIDLYATYGKLMN--CGGGGSCGTCIV--------------------EK 111
+K + D +++ +++G ++ CGGGGSCG C V E
Sbjct: 43 DKSFTAPAGDKLLNMLSSHGIFVSSACGGGGSCGQCRVTIKEGGGDILPTELSHISKREA 102
Query: 112 PESWRLACQTIV 123
E RLACQ V
Sbjct: 103 KEGCRLACQVNV 114
>NQRF_PSEAE (Q9HZL1) Na(+)-translocating NADH-quinone reductase
subunit F (EC 1.6.5.-) (Na(+)-translocating NQR subunit
F) (Na(+)-NQR subunit F) (NQR complex subunit F) (NQR-1
subunit F)
Length = 407
Score = 30.8 bits (68), Expect = 1.0
Identities = 22/72 (30%), Positives = 32/72 (43%), Gaps = 27/72 (37%)
Query: 72 SGEKLMRSIMSDNKIDLYATYGKLMNCGGGGSCGTC---IVE-----------------K 111
+G KL++++ ++N A CGGGG+C C +VE
Sbjct: 51 AGGKLLQTLAANNVFLSSA-------CGGGGTCAQCKCVVVEGGGEMLPTEESHFTRRQA 103
Query: 112 PESWRLACQTIV 123
E WRL+CQT V
Sbjct: 104 KEGWRLSCQTPV 115
>ZAR1_RAT (Q7TSX9) Zygote arrest 1 (Oocyte-specific maternal effect
factor)
Length = 361
Score = 29.3 bits (64), Expect = 2.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 25 PRRRPNSVCLVANSPESPSPPPEIEL 50
PR P+SV + + P S PPP +E+
Sbjct: 204 PREDPDSVAAMQSEPGSEEPPPAVEM 229
>NQRF_VIBVU (Q8DBJ1) Na(+)-translocating NADH-quinone reductase
subunit F (EC 1.6.5.-) (Na(+)-translocating NQR subunit
F) (Na(+)-NQR subunit F) (NQR complex subunit F) (NQR-1
subunit F)
Length = 407
Score = 29.3 bits (64), Expect = 2.9
Identities = 18/46 (39%), Positives = 18/46 (39%), Gaps = 20/46 (43%)
Query: 98 CGGGGSCGTCIV--------------------EKPESWRLACQTIV 123
CGGGGSCG C V E E RLACQ V
Sbjct: 69 CGGGGSCGQCRVKVKSGGGDILPTELDHITKGEAREGERLACQVAV 114
>NQRF_VIBPA (Q9LCJ0) Na(+)-translocating NADH-quinone reductase
subunit F (EC 1.6.5.-) (Na(+)-translocating NQR subunit
F) (Na(+)-NQR subunit F) (NQR complex subunit F) (NQR-1
subunit F)
Length = 407
Score = 29.3 bits (64), Expect = 2.9
Identities = 18/46 (39%), Positives = 18/46 (39%), Gaps = 20/46 (43%)
Query: 98 CGGGGSCGTCIV--------------------EKPESWRLACQTIV 123
CGGGGSCG C V E E RLACQ V
Sbjct: 69 CGGGGSCGQCRVKVKSGGGDILPTELDHITKGEAREGERLACQVAV 114
>NQRF_VIBCH (Q9X4Q8) Na(+)-translocating NADH-quinone reductase
subunit F (EC 1.6.5.-) (Na(+)-translocating NQR subunit
F) (Na(+)-NQR subunit F) (NQR complex subunit F) (NQR-1
subunit F)
Length = 408
Score = 29.3 bits (64), Expect = 2.9
Identities = 18/46 (39%), Positives = 18/46 (39%), Gaps = 20/46 (43%)
Query: 98 CGGGGSCGTCIV--------------------EKPESWRLACQTIV 123
CGGGGSCG C V E E RLACQ V
Sbjct: 70 CGGGGSCGQCRVKIKSGGGDILPTELDHISKGEAREGERLACQVAV 115
>TERP_PSESP (P33007) Terpredoxin (TDX)
Length = 105
Score = 28.9 bits (63), Expect = 3.8
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
Query: 58 EGDGSFPVDKVKAISGEKLMRSIMSDNKIDLYATYGKLMNCGGGGSCGTCIVEKPESW 115
E G + VD A G+ LM + + N + G + CGG C TC +E ++W
Sbjct: 8 EQSGEYAVD---AQDGQSLME-VATQNGVP-----GIVAECGGSCVCATCRIEIEDAW 56
>CMC1_CAEEL (Q21153) Probable calcium-binding mitochondrial carrier
K02F3.2
Length = 702
Score = 28.9 bits (63), Expect = 3.8
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 54 GPKPEGDGSFPVDKVKAISGEKLMRSIMSDNKIDLYATYGKLMNCGGGGSCGTCIVEKPE 113
G P+ G P +K + + D KI LY G+++ G GG C E
Sbjct: 429 GLLPQIVGVAPEKAIKLTMNDYMRDKFTKDGKIPLY---GEIIAGGTGGMCQVVFTNPLE 485
Query: 114 SWRLACQTIVGNKENSGKVV 133
++ QT G + +GK +
Sbjct: 486 IVKIRLQT-AGEVQQAGKKI 504
>NQRF_VIBAL (Q56584) Na(+)-translocating NADH-quinone reductase
subunit F (EC 1.6.5.-) (Na(+)-translocating NADH-quinone
reductase subunit beta) (Na(+)-translocating NQR subunit
F) (Na(+)-NQR subunit F) (NQR complex subunit F) (NQR-1
subunit F)
Length = 407
Score = 28.5 bits (62), Expect = 5.0
Identities = 10/13 (76%), Positives = 11/13 (83%)
Query: 98 CGGGGSCGTCIVE 110
CGGGGSCG C V+
Sbjct: 69 CGGGGSCGQCRVK 81
>YJ13_SCHPO (O13681) Hypothetical protein C737.03c in chromosome III
Length = 615
Score = 28.1 bits (61), Expect = 6.5
Identities = 21/66 (31%), Positives = 24/66 (35%), Gaps = 2/66 (3%)
Query: 42 PSPPPEIELEFVGPKPEGDGSFPVDKVKAISGEKLMR--SIMSDNKIDLYATYGKLMNCG 99
PSPPPE+ L KP V I E R I NK+ +AT L N
Sbjct: 345 PSPPPEVHLTGEILKPRKKRQESTSSVHRIGKESSDRKDGISGQNKLQQFATISILNNTN 404
Query: 100 GGGSCG 105
G
Sbjct: 405 ATSHLG 410
>NQRF_NEIMB (Q9K0M8) Na(+)-translocating NADH-quinone reductase
subunit F (EC 1.6.5.-) (Na(+)-translocating NQR subunit
F) (Na(+)-NQR subunit F) (NQR complex subunit F) (NQR-1
subunit F)
Length = 405
Score = 28.1 bits (61), Expect = 6.5
Identities = 10/12 (83%), Positives = 10/12 (83%)
Query: 98 CGGGGSCGTCIV 109
CGGGGSCG C V
Sbjct: 67 CGGGGSCGQCRV 78
>NQRF_NEIMA (Q9JVQ3) Na(+)-translocating NADH-quinone reductase
subunit F (EC 1.6.5.-) (Na(+)-translocating NQR subunit
F) (Na(+)-NQR subunit F) (NQR complex subunit F) (NQR-1
subunit F)
Length = 405
Score = 28.1 bits (61), Expect = 6.5
Identities = 10/12 (83%), Positives = 10/12 (83%)
Query: 98 CGGGGSCGTCIV 109
CGGGGSCG C V
Sbjct: 67 CGGGGSCGQCRV 78
>CDB2_HUMAN (Q9Y5E7) Protocadherin beta 2 precursor (PCDH-beta2)
Length = 798
Score = 28.1 bits (61), Expect = 6.5
Identities = 15/43 (34%), Positives = 21/43 (47%), Gaps = 2/43 (4%)
Query: 67 KVKAISGEKLMRSIMSDNKIDLYATYGKLMNCGGGGSCGTCIV 109
++ A SGE L+R + I Y + GGG GTC+V
Sbjct: 295 RLSAKSGELLLRQKLDFESIQTYTV--NIQATDGGGLSGTCVV 335
>ACPS_ECOL6 (Q8FF19) Holo-[acyl-carrier-protein] synthase (EC
2.7.8.7) (Holo-ACP synthase) (4'-phosphopantetheinyl
transferase acpS)
Length = 125
Score = 28.1 bits (61), Expect = 6.5
Identities = 11/28 (39%), Positives = 21/28 (74%)
Query: 65 VDKVKAISGEKLMRSIMSDNKIDLYATY 92
++ V A SGE+L R ++SDN+ +++ T+
Sbjct: 15 IEAVIARSGERLARRVLSDNEWEIWKTH 42
>ACPS_ECO57 (Q8XA39) Holo-[acyl-carrier-protein] synthase (EC
2.7.8.7) (Holo-ACP synthase) (4'-phosphopantetheinyl
transferase acpS)
Length = 125
Score = 28.1 bits (61), Expect = 6.5
Identities = 11/28 (39%), Positives = 21/28 (74%)
Query: 65 VDKVKAISGEKLMRSIMSDNKIDLYATY 92
++ V A SGE+L R ++SDN+ +++ T+
Sbjct: 15 IEAVIARSGERLARRVLSDNEWEIWKTH 42
>RIP1_RAT (Q9JIR0) Peripheral-type benzodiazepine receptor-associated
protein 1 (PRAX-1) (RIM binding protein 1) (RIM-BP1)
Length = 1847
Score = 27.7 bits (60), Expect = 8.5
Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 20/118 (16%)
Query: 42 PSPP------PEIELEFVGPKPEGDGSFPVDK--VKAISGEKLMRSIMSDNKIDLYATYG 93
P PP P IE VG +P G G + + + + E + S +S +++ Y
Sbjct: 1435 PVPPRDRGSLPVIEGTRVGQEPGGRGRPGLSRRCPRGPAPESSLVSCLSPKCLEISIEYD 1494
Query: 94 ----KLMNCGGGGSCGTCIVEKPESWRLACQTIVGN-----KENSGKVVVQRIPQWKK 142
+ + GG +C E+W A VG K NSG R+P W+K
Sbjct: 1495 SEDEQEVGSGGVSISSSCYPTDGEAWGTAA---VGRPRGPVKVNSGSNTYLRLPAWEK 1549
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.317 0.137 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,643,193
Number of Sequences: 164201
Number of extensions: 942001
Number of successful extensions: 2549
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2531
Number of HSP's gapped (non-prelim): 26
length of query: 142
length of database: 59,974,054
effective HSP length: 99
effective length of query: 43
effective length of database: 43,718,155
effective search space: 1879880665
effective search space used: 1879880665
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Medicago: description of AC146722.13