BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146721.2 - phase: 1 /pseudo
(407 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YDO9_SCHPO (O13729) Hypothetical protein C15A10.09c in chromosome I 34 0.77
NU2M_APILI (P34849) NADH-ubiquinone oxidoreductase chain 2 (EC 1... 33 1.0
YEBQ_ECOLI (P76269) Hypothetical transport protein yebQ 32 2.2
SYK1_METAC (Q8TTA3) Lysyl-tRNA synthetase 1 (EC 6.1.1.6) (Lysine... 32 2.9
Y786_CORGL (Q8NS93) Hypothetical UPF0182 protein Cgl0786/cg0896 32 3.8
OYE6_HUMAN (Q96RD3) Olfactory receptor 52E6 32 3.8
ABC1_MOUSE (P41233) ATP-binding cassette, sub-family A, member 1... 32 3.8
HPPA_BACTN (Q8A294) Pyrophosphate-energized proton pump (EC 3.6.... 31 6.5
FLIG_BORBU (P52610) Flagellar motor switch protein fliG 31 6.5
POLG_CX16T (Q9QF31) Genome polyprotein [Contains: Coat protein V... 30 8.5
LGT_MYCPN (P75547) Prolipoprotein diacylglyceryl transferase (EC... 30 8.5
BPA1_STRAU (P33912) Non-haem bromoperoxidase BPO-A1 (EC 1.11.1.-... 30 8.5
>YDO9_SCHPO (O13729) Hypothetical protein C15A10.09c in chromosome I
Length = 288
Score = 33.9 bits (76), Expect = 0.77
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 250 ASSFTIVGTLIITIMFAAAFTVPGGNNQDKGTPIFLGKNAFSFFIVTDSLSLIASASSVL 309
A+ FT + +I + A + N + PI LGK +++ ++ + L A+ +L
Sbjct: 219 ATIFTFIAAVIAVATYRIAISELEKNIEILNIPIVLGKKIYAYSFLSAAAGL---AACIL 275
Query: 310 MFIGILTSRYA 320
FIG LTS Y+
Sbjct: 276 YFIGNLTSGYS 286
>NU2M_APILI (P34849) NADH-ubiquinone oxidoreductase chain 2 (EC
1.6.5.3)
Length = 333
Score = 33.5 bits (75), Expect = 1.0
Identities = 29/121 (23%), Positives = 56/121 (45%), Gaps = 23/121 (19%)
Query: 289 AFSFFIVTDSLSLIASASSVLMFIGILTSRYAEEDFNTSLPAKLLFGLFTIFLS------ 342
+F++F++ L+ + MF Y + T L + ++ IFLS
Sbjct: 202 SFNYFLLISFLNKFNIQNFNFMF-------YNKYQMYTFLTLMFNYSMYPIFLSFVIKWN 254
Query: 343 VVFMMCSFCSALALMLKGYRWIIITAIASSVIPILVFMFSLLRLFSEVCISFLRSYFLRK 402
++FMM S +K Y WI+ + SS++ I ++ L R+F + ++F ++ F+
Sbjct: 255 LIFMMVS--------VKAYNWILFLLMISSMLMIWNYIIILKRVFLK--MNFYKNNFIDD 304
Query: 403 K 403
K
Sbjct: 305 K 305
>YEBQ_ECOLI (P76269) Hypothetical transport protein yebQ
Length = 457
Score = 32.3 bits (72), Expect = 2.2
Identities = 36/118 (30%), Positives = 50/118 (41%), Gaps = 28/118 (23%)
Query: 260 IITIMFAAAFTVPGGNNQDKGTPIF-------------LGKNAFSFFIVTDSLSLIASAS 306
II ++ A F P G+ K P F L A S F SL+LIA+
Sbjct: 181 IIALLLAMRFLPPNGSRASK--PRFDLPSAVMNALTFGLLITALSGFAQGQSLTLIAAEL 238
Query: 307 SVLMFIGILTSRYAEEDFNTSLPAKLL------FGLFTIFLSVVFMMCSFCSALALML 358
V++ +GI R SLP LL LF+ LS+ +CSFC+ + M+
Sbjct: 239 VVMVVVGIFFIRR-----QLSLPVPLLPVDLLRIPLFS--LSICTSVCSFCAQMLAMV 289
>SYK1_METAC (Q8TTA3) Lysyl-tRNA synthetase 1 (EC 6.1.1.6)
(Lysine--tRNA ligase 1) (LysRS 1)
Length = 533
Score = 32.0 bits (71), Expect = 2.9
Identities = 17/57 (29%), Positives = 36/57 (62%), Gaps = 5/57 (8%)
Query: 110 AKYGIIEFINSMREA--NPDLLWAMDKYKRGIFAHAI---LNRQDKVFKLIYEMEGQ 161
A++ + FI ++R NP++L A + Y+ G++ AI L ++D++ K++ E+ G+
Sbjct: 100 AEHFLKPFIEALRRLGINPEVLRADEMYRAGLYTEAIKTALAKRDEIAKILEEVSGK 156
>Y786_CORGL (Q8NS93) Hypothetical UPF0182 protein Cgl0786/cg0896
Length = 985
Score = 31.6 bits (70), Expect = 3.8
Identities = 33/145 (22%), Positives = 61/145 (41%), Gaps = 10/145 (6%)
Query: 249 IASSFTIVGTLIITIMFAAAFTVPG--GNNQDKGTPIFLGKNAFSFFIVTDSL-SLIASA 305
IA S +++ + I + + G NQ G F+ + A + VT L L+ A
Sbjct: 171 IADSLSMMLIVAFLIALVGHYLMGGIRAGNQMTGQKSFVSRGARTQLAVTAGLWMLVKVA 230
Query: 306 SSVLMFIGILTSRYAE------EDFNTSLPAKLLFGLFTIFLSVVFMMCSFCSALALM-L 358
L +LT + D N LPAK++ + +F+++ F F L + L
Sbjct: 231 GYWLDRYDLLTKENSTFTGASYTDINAQLPAKIILLVIALFVAIAFFSAIFLKDLRIPGL 290
Query: 359 KGYRWIIITAIASSVIPILVFMFSL 383
++ + I + P+++ FS+
Sbjct: 291 AVVLMLLSSVIIGAAWPLMLERFSV 315
>OYE6_HUMAN (Q96RD3) Olfactory receptor 52E6
Length = 313
Score = 31.6 bits (70), Expect = 3.8
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 10/100 (10%)
Query: 297 DSLSLIASASSVLMFIGILTSRYAEEDFNTSLPAKLLFGLFTIFLSVVFMMCSFCSALAL 356
DS+ L S +++ +GI E F L FT+ S+V + +F +A+
Sbjct: 69 DSIDLSLSTATIPKMLGIFWFNIKEISFGGYLSQMFFIHFFTVMESIVLVAMAFDRYIAI 128
Query: 357 MLKGYRWIIIT----------AIASSVIPILVFMFSLLRL 386
+ +I+T A+ S+ ++ +F LLRL
Sbjct: 129 CKPLWYTMILTSKIISLIAGIAVLRSLYMVIPLVFLLLRL 168
>ABC1_MOUSE (P41233) ATP-binding cassette, sub-family A, member 1
(ATP-binding cassette transporter 1) (ATP-binding
cassette 1) (ABC-1)
Length = 2261
Score = 31.6 bits (70), Expect = 3.8
Identities = 62/269 (23%), Positives = 112/269 (41%), Gaps = 42/269 (15%)
Query: 112 YGIIEFINSMREANPDLLWAMDKYKRGIFAHAILNRQ-----DKVFKLIYEMEGQKELKT 166
Y + ++ + ++ + +W +++++ G F+ + N Q +V I +M+ K LK
Sbjct: 1508 YLVKTYVQIIAKSLKNKIW-VNEFRYGGFSLGVSNSQALPPSHEVNDAIKQMK--KLLKL 1564
Query: 167 TKDIFENNLLHLAAELGPSSYRGCRSNAALQMQGELQ-WFK-----AVESTVPPMCKEAK 220
TKD + L + LG R A L + ++ WF A+ S + +
Sbjct: 1565 TKDTSADRFL---SSLG-------RFMAGLDTKNNVKVWFNNKGWHAISSFLNVINNAIL 1614
Query: 221 NAD---GLTPHELFTKNHEHLLNEGRQWAKDIASSFTIVGTLI-ITIMFAAAFTVPGGNN 276
A+ G P + H LN +Q ++A T V L+ I ++FA +F VP
Sbjct: 1615 RANLQKGENPSQYGITAFNHPLNLTKQQLSEVALMTTSVDVLVSICVIFAMSF-VPAS-- 1671
Query: 277 QDKGTPIFLGKNAFSFFIVTDSLSLIASASSVLMFIGILTSRYAEEDFNTSLPAKLLFGL 336
+FL + S L I+ V+ ++ S + + N +PA L+ +
Sbjct: 1672 ----FVVFLIQERVS---KAKHLQFISGVKPVIYWL----SNFVWDMCNYVVPATLVIII 1720
Query: 337 FTIFLSVVFMMCSFCSALALMLKGYRWII 365
F F ++ + LAL+L Y W I
Sbjct: 1721 FICFQQKSYVSSTNLPVLALLLLLYGWSI 1749
>HPPA_BACTN (Q8A294) Pyrophosphate-energized proton pump (EC
3.6.1.1) (Pyrophosphate-energized inorganic
pyrophosphatase) (H+-PPase) (Membrane-bound
proton-translocating pyrophosphatase)
Length = 734
Score = 30.8 bits (68), Expect = 6.5
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 301 LIASASSVLMFIGILTSRYAEEDFNTSLPAKLLFGLFTIFLSVVFMMCSFCSALALMLKG 360
LIA+ +L IGI + R E L L FG T SV+ + +F L L
Sbjct: 281 LIAAVGILLSIIGIFSVRTKENATVKDLLGSLAFG--TNLSSVLIVAATFLILWLLQLDN 338
Query: 361 YRWIIITAIASSVIPILV 378
+ WI + ++ I++
Sbjct: 339 WIWISCAVVVGLLVGIVI 356
>FLIG_BORBU (P52610) Flagellar motor switch protein fliG
Length = 344
Score = 30.8 bits (68), Expect = 6.5
Identities = 25/98 (25%), Positives = 49/98 (49%), Gaps = 4/98 (4%)
Query: 76 LVREIMRRLCEKIEKISSESELHQCSIHDA--MLQAAKYGIIEF-INSMREANPDLLWAM 132
+VRE+ R L +K+ +SSE + + ++ A +F I S+ E +P+L +
Sbjct: 181 VVREVERVLEKKLASLSSEDYTSAGGVDNVVEIINMADRKTEKFIIESLEEEDPELAEEI 240
Query: 133 DKYKRGIFAHAILNRQDKVFKLIYEMEGQKELKTTKDI 170
K K +F +L + +++ E++GQ+ K K +
Sbjct: 241 KK-KMFVFEDIVLLDDRSIQRVLREIDGQELAKALKSV 277
>POLG_CX16T (Q9QF31) Genome polyprotein [Contains: Coat protein VP4
(P1A); Coat protein VP2 (P1B); Coat protein VP3 (P1C);
Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29)
(Core protein P2A); Core protein P2B; Core protein P2C;
Core protein P3A; Genome
Length = 2193
Score = 30.4 bits (67), Expect = 8.5
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 244 QWAKDIASSFTIVGTLIITIMFAAAFTVPGGNNQDKGTPIFLGKNAFSFFIVTDSLSLI 302
QW+ + +F G+ + T A+T PGGN LG + F + S++L+
Sbjct: 433 QWSGSLEVTFMFAGSFMATGKMLIAYTPPGGNVPADRITAMLGTHVIWDFGLQSSVTLV 491
>LGT_MYCPN (P75547) Prolipoprotein diacylglyceryl transferase (EC
2.4.99.-)
Length = 389
Score = 30.4 bits (67), Expect = 8.5
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 17/78 (21%)
Query: 286 GKNAFSFFIVTDSLSLIASASSVLMFIGILTSRYAEEDFNTSLPAKLLFGLFTIFLSVVF 345
G FS+F+ T + LI T R +NTS+ +F I + +V
Sbjct: 250 GTIGFSYFLATGIVRLILE-----------TQRDEAFKYNTSI----VFSALLILVGIVG 294
Query: 346 MMCSFCSALALMLKGYRW 363
++ +C LA+ L+GY W
Sbjct: 295 II--YCQTLAIKLRGYFW 310
>BPA1_STRAU (P33912) Non-haem bromoperoxidase BPO-A1 (EC 1.11.1.-)
(Bromide peroxidase) (BPO1)
Length = 274
Score = 30.4 bits (67), Expect = 8.5
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 210 STVPP-MCKEAKNADGLTPHELFTKNHEHLLNEGRQWAKDIASSF 253
S +PP M K KN DG+ P E+F +L E Q+ KD A F
Sbjct: 119 SAIPPVMIKSDKNPDGV-PDEVFDALKNGVLTERSQFWKDTAEGF 162
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.328 0.139 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,074,784
Number of Sequences: 164201
Number of extensions: 1667421
Number of successful extensions: 5708
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 5702
Number of HSP's gapped (non-prelim): 14
length of query: 407
length of database: 59,974,054
effective HSP length: 113
effective length of query: 294
effective length of database: 41,419,341
effective search space: 12177286254
effective search space used: 12177286254
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 67 (30.4 bits)
Medicago: description of AC146721.2