BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146720.2 - phase: 0
(1333 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 495 e-139
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain... 291 1e-77
M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810... 208 9e-53
YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein 154 1e-36
YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein 115 8e-25
YJZ7_YEAST (P47098) Transposon Ty1 protein B 110 2e-23
YMT5_YEAST (Q04214) Transposon Ty1 protein B 110 3e-23
YJZ9_YEAST (P47100) Transposon Ty1 protein B 110 3e-23
YMU0_YEAST (Q04670) Transposon Ty1 protein B 108 7e-23
YMD9_YEAST (Q03434) Transposon Ty1 protein B 108 1e-22
YME4_YEAST (Q04711) Transposon Ty1 protein B 108 1e-22
M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820... 107 2e-22
YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B) 105 6e-22
M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240... 76 7e-13
POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23... 58 2e-07
POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.2... 55 1e-06
POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse transcript... 54 2e-06
POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.2... 52 1e-05
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 52 1e-05
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 50 3e-05
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 495 bits (1274), Expect = e-139
Identities = 383/1345 (28%), Positives = 583/1345 (42%), Gaps = 153/1345 (11%)
Query: 22 NVIPQLNLRGI---AFLIFFDNKNSRALYLEQEFSKISMEQFSTASSYCQHIKSLSDQLA 78
N+I + RGI ++ + LYL+++ + M + + S+ L QLA
Sbjct: 74 NIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNVFNGLITQLA 133
Query: 79 NVGAPVSNERMVLQLVSGLSEAYDTVGSQIRHSDTLPPFYKARSMVVLEETARAKRTAVT 138
N+G + E + L++ L +YD + + I H T S ++L E R K
Sbjct: 134 NLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKDVTSALLLNEKMRKKPENQG 193
Query: 139 TANSTFLAAQEDNNSGNSPSHRPNRNNNSNNGSRGGRGGSGNNHGGRGRGRGGGRGGRSH 198
A T G S++ + NN +G+RG + + R R +
Sbjct: 194 QALIT---------EGRGRSYQRSSNNYGRSGARG-----------KSKNRSKSRVRNCY 233
Query: 199 NYQQGSWQQPQAPQHQWAYPPYQYPSWNAPWQPWATPPCPYPTTGNWQRPVVPNRQAGIL 258
N Q P H CP P G +
Sbjct: 234 NCNQ--------PGH-------------------FKRDCPNPRKGKGETS---------- 256
Query: 259 GAKPQQAHVAATPSS-YAPTDIQAAMHSLSLAPPDEQWYMDTGATSHMTANGGNLTSY-S 316
G K A ++ I + L+ P+ +W +DT A+ H T Y +
Sbjct: 257 GQKNDDNTAAMVQNNDNVVLFINEEEECMHLSGPESEWVVDTAASHHATPVRDLFCRYVA 316
Query: 317 NISNNITVGSGHNIPVIGCGNALVQ-NPQYPLTLNNVLHAPKLIKNLVSVRKFTIDNEVS 375
+ +G+ + G G+ ++ N L L +V H P L NL+S D S
Sbjct: 317 GDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYES 376
Query: 376 VEFDPFGFSVKDFQTGMPLMRCNSSGDLYPLATRPYYPSTTPSTFAALSNEIWHNRLGHP 435
+ K + + + + G LY + +S ++WH R+GH
Sbjct: 377 YFANQKWRLTKG---SLVIAKGVARGTLYR-TNAEICQGELNAAQDEISVDLWHKRMGHM 432
Query: 436 GVSILNSLHRNNSILCNKFRNNFFCQSCQLGKQIKLPFYESLSSTLLPFDIVHSDIW-TS 494
L L + + I K C C GKQ ++ F S L D+V+SD+
Sbjct: 433 SEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVSFQTSSERKLNILDLVYSDVCGPM 492
Query: 495 PILSSGGHHYYILFLDDFTDFLWTFPLTNKSQAHSIFLQFCNHIKTQFERDIKCFQCDNG 554
I S GG+ Y++ F+DD + LW + L K Q +F +F ++ + R +K + DNG
Sbjct: 493 EIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNG 552
Query: 555 KEYDNSHFHQFCKQNGMIFRFSCPHTSPQNGKVERKIRTINNIIRTLLAHASLPPSFWHH 614
EY + F ++C +G+ + P T NG ER RTI +R++L A LP SFW
Sbjct: 553 GEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGE 612
Query: 615 ALQMATYLLNILPTKKLALQTPTTILYQKSPSYSHLKVFGCLCFPLIPSTTRNKLQARST 674
A+Q A YL+N P+ LA + P + K SYSHLKVFGC F +P R KL +S
Sbjct: 613 AVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSI 672
Query: 675 PCVFLGYPSNHRGYKCFELSSRKIIISRHVIFDEN---TFPFSNSNIPESSCYNFLDTSD 731
PC+F+GY GY+ ++ +K+I SR V+F E+ T + + NF+
Sbjct: 673 PCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRESEVRTAADMSEKVKNGIIPNFV---- 728
Query: 732 TPFPYHLFQHTSNLPTNEPNSHDQPPTTTATPLTTPYSINTTTHQP--TVAPSPQIQTSP 789
TSN PT+ ++ D+ ++ QP + Q+
Sbjct: 729 ------TIPSTSNNPTSAESTTDE--------------VSEQGEQPGEVIEQGEQLDEGV 768
Query: 790 QLTITPNTASPHQIPPPNPLLANPPLSPQMTTRAQHGIFKPRQLLNLHTSSSNQISPLPT 849
+ P + PL R + + + + + S+ P
Sbjct: 769 EEVEHPTQGEEQ----------HQPLRRSERPRVESRRYPSTEYVLI----SDDREPESL 814
Query: 850 NPINALQDHNWKM-AMKDEYDALIDNKTWDLVPRPSNANIIRSLWIFRHKKKADGSFERY 908
+ + + N M AM++E ++L N T+ LV P ++ W+F+ KK D RY
Sbjct: 815 KEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRY 874
Query: 909 KARLVGNGSNQQTGVDCGETFSPVVKPATIRTVLSIALSKSWCLHQLDVKNAFLHGNLNE 968
KARLV G Q+ G+D E FSPVVK +IRT+LS+A S + QLDVK AFLHG+L E
Sbjct: 875 KARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEE 934
Query: 969 TVYMYQPPGFRDPQHPDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSHSVCDHSLFI 1028
+YM QP GF VC L KSLYGLKQAPR WY +F ++ + + + D ++
Sbjct: 935 EIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYF 994
Query: 1029 YH-SGDDTAYILLYVDDIILTASSDTLRQSIMSKLNSEFAMKDLGPLSYFLGISVTRHSD 1087
S ++ +LLYVDD+++ L + L+ F MKDLGP LG+ + R
Sbjct: 995 KRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERT 1054
Query: 1088 DTKAKLSG-------------TSGNPYHDP------------------------SEYRSL 1110
K LS + P P Y S
Sbjct: 1055 SRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSA 1114
Query: 1111 AGALQY-LTFTRPDISYAVQQVCLFMHDPKTQHMTALKRIIRYIKGTSTHGLHLYPSTVD 1169
G+L Y + TRPDI++AV V F+ +P +H A+K I+RY++GT+ L + +
Sbjct: 1115 VGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCL-CFGGSDP 1173
Query: 1170 KLTTYTDADWGGCPDTRKSTSGYCVYLGDNLVSWSAKRQPTLSRSSAEAEYRGVANVVSE 1229
L YTDAD G D RKS++GY +SW +K Q ++ S+ EAEY E
Sbjct: 1174 ILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKE 1233
Query: 1230 SCWLRNLLLELQCPVTKATLVYCDNVSAVYLSGNPIQHQRTKHIEMDIHFVREKVARGQV 1289
WL+ L EL K +VYCD+ SA+ LS N + H RTKHI++ H++RE V +
Sbjct: 1234 MIWLKRFLQELGLH-QKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESL 1292
Query: 1290 RVMHVPSRYQIADIFTKGLPLQLFD 1314
+V+ + + AD+ TK +P F+
Sbjct: 1293 KVLKISTNENPADMLTKVVPRNKFE 1317
>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
Copia VLP protein; Copia protease (EC 3.4.23.-)]
Length = 1409
Score = 291 bits (744), Expect = 1e-77
Identities = 171/500 (34%), Positives = 260/500 (51%), Gaps = 36/500 (7%)
Query: 859 NWKMAMKDEYDALIDNKTWDLVPRPSNANIIRSLWIFRHKKKADGSFERYKARLVGNGSN 918
+W+ A+ E +A N TW + RP N NI+ S W+F K G+ RYKARLV G
Sbjct: 905 SWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFT 964
Query: 919 QQTGVDCGETFSPVVKPATIRTVLSIALSKSWCLHQLDVKNAFLHGNLNETVYMYQPPGF 978
Q+ +D ETF+PV + ++ R +LS+ + + +HQ+DVK AFL+G L E +YM P G
Sbjct: 965 QKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGI 1024
Query: 979 RDPQHPDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSHSVCDHSLFIYHSG--DDTA 1036
+ D VC L K++YGLKQA R W++ F + F +S D ++I G ++
Sbjct: 1025 --SCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENI 1082
Query: 1037 YILLYVDDIILTASSDTLRQSIMSKLNSEFAMKDLGPLSYFLGISVTRHSD--------- 1087
Y+LLYVDD+++ T + L +F M DL + +F+GI + D
Sbjct: 1083 YVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAY 1142
Query: 1088 --DTKAKLSGTSGNPYHDP-----------------SEYRSLAGALQYLTF-TRPDISYA 1127
+K + + N P + RSL G L Y+ TRPD++ A
Sbjct: 1143 VKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTA 1202
Query: 1128 VQQVCLFMHDPKTQHMTALKRIIRYIKGTSTHGLHLYPSTV--DKLTTYTDADWGGCPDT 1185
V + + ++ LKR++RY+KGT L + +K+ Y D+DW G
Sbjct: 1203 VNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEID 1262
Query: 1186 RKSTSGYCVYLGD-NLVSWSAKRQPTLSRSSAEAEYRGVANVVSESCWLRNLLLELQCPV 1244
RKST+GY + D NL+ W+ KRQ +++ SS EAEY + V E+ WL+ LL + +
Sbjct: 1263 RKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKL 1322
Query: 1245 TKATLVYCDNVSAVYLSGNPIQHQRTKHIEMDIHFVREKVARGQVRVMHVPSRYQIADIF 1304
+Y DN + ++ NP H+R KHI++ HF RE+V + + ++P+ Q+ADIF
Sbjct: 1323 ENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIF 1382
Query: 1305 TKGLPLQLFDDFRDSLHIRQ 1324
TK LP F + RD L + Q
Sbjct: 1383 TKPLPAARFVELRDKLGLLQ 1402
Score = 177 bits (448), Expect = 2e-43
Identities = 125/428 (29%), Positives = 208/428 (48%), Gaps = 29/428 (6%)
Query: 297 MDTGATSHMTANGGNLTSYSNISNNITVG---SGHNIPVIGCGNALVQNPQYPLTLNNVL 353
+D+GA+ H+ + T + + + G I G ++N + +TL +VL
Sbjct: 291 LDSGASDHLINDESLYTDSVEVVPPLKIAVAKQGEFIYATKRGIVRLRN-DHEITLEDVL 349
Query: 354 HAPKLIKNLVSVRKFTIDNEVSVEFDPFGFSVKDFQTGMPLMRCNSSGDLYPLATRPYYP 413
+ NL+SV++ + +S+EFD G ++ + G+ +++ + + P+ Y
Sbjct: 350 FCKEAAGNLMSVKRLQ-EAGMSIEFDKSGVTIS--KNGLMVVKNSGMLNNVPVINFQAY- 405
Query: 414 STTPSTFAALSNE--IWHNRLGHPGVSILNSLHRNNSILCNKFRNNF-----FCQSCQLG 466
S A N +WH R GH L + R N NN C+ C G
Sbjct: 406 ----SINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEICEPCLNG 461
Query: 467 KQIKLPFYESLSSTLL--PFDIVHSDIWTSPI--LSSGGHHYYILFLDDFTDFLWTFPLT 522
KQ +LPF + T + P +VHSD+ PI ++ +Y+++F+D FT + T+ +
Sbjct: 462 KQARLPFKQLKDKTHIKRPLFVVHSDV-CGPITPVTLDDKNYFVIFVDQFTHYCVTYLIK 520
Query: 523 NKSQAHSIFLQFCNHIKTQFERDIKCFQCDNGKEYDNSHFHQFCKQNGMIFRFSCPHTSP 582
KS S+F F + F + DNG+EY ++ QFC + G+ + + PHT
Sbjct: 521 YKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQ 580
Query: 583 QNGKVERKIRTINNIIRTLLAHASLPPSFWHHALQMATYLLNILPTKKL--ALQTPTTIL 640
NG ER IRTI RT+++ A L SFW A+ ATYL+N +P++ L + +TP +
Sbjct: 581 LNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMW 640
Query: 641 YQKSPSYSHLKVFGCLCFPLIPSTTRNKLQARSTPCVFLGYPSNHRGYKCFELSSRKIII 700
+ K P HL+VFG + I + K +S +F+GY N G+K ++ + K I+
Sbjct: 641 HNKKPYLKHLRVFGATVYVHI-KNKQGKFDDKSFKSIFVGYEPN--GFKLWDAVNEKFIV 697
Query: 701 SRHVIFDE 708
+R V+ DE
Sbjct: 698 ARDVVVDE 705
>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810
(ORF240b)
Length = 240
Score = 208 bits (529), Expect = 9e-53
Identities = 106/224 (47%), Positives = 140/224 (62%), Gaps = 28/224 (12%)
Query: 1037 YILLYVDDIILTASSDTLRQSIMSKLNSEFAMKDLGPLSYFLGISVTRH----------- 1085
Y+LLYVDDI+LT SS+TL ++ +L+S F+MKDLGP+ YFLGI + H
Sbjct: 2 YLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKY 61
Query: 1086 ----------------SDDTKAKL-SGTSGNPYHDPSEYRSLAGALQYLTFTRPDISYAV 1128
S KL S S Y DPS++RS+ GALQYLT TRPDISYAV
Sbjct: 62 AEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAV 121
Query: 1129 QQVCLFMHDPKTQHMTALKRIIRYIKGTSTHGLHLYPSTVDKLTTYTDADWGGCPDTRKS 1188
VC MH+P LKR++RY+KGT HGL+++ ++ + + D+DW GC TR+S
Sbjct: 122 NIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRS 181
Query: 1189 TSGYCVYLGDNLVSWSAKRQPTLSRSSAEAEYRGVANVVSESCW 1232
T+G+C +LG N++SWSAKRQPT+SRSS E EYR +A +E W
Sbjct: 182 TTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225
>YCH4_YEAST (P25600) Transposon Ty5-1 34.5 kDa hypothetical protein
Length = 308
Score = 154 bits (390), Expect = 1e-36
Identities = 97/307 (31%), Positives = 150/307 (48%), Gaps = 32/307 (10%)
Query: 955 LDVKNAFLHGNLNETVYMYQPPGFRDPQHPDYVCLLKKSLYGLKQAPRAWYQRFTDYVAT 1014
+DV AFL+ ++E +Y+ QPPGF + ++PDYV L +YGLKQAP W + + +
Sbjct: 1 MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60
Query: 1015 LGFSHSVCDHSLFIYHSGDDTAYILLYVDDIILTASSDTLRQSIMSKLNSEFAMKDLGPL 1074
+GF +H L+ + D YI +YVDD+++ A S + + +L ++MKDLG +
Sbjct: 61 IGFCRHEGEHGLYFRSTSDGPIYIGVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120
Query: 1075 SYFLGIS--------VTRHSDDTKAK----------------------LSGTSGNPYHDP 1104
FLG++ +T D AK L T+ D
Sbjct: 121 DKFLGLNIHQSTNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDI 180
Query: 1105 SEYRSLAGALQYLTFT-RPDISYAVQQVCLFMHDPKTQHMTALKRIIRYIKGTSTHGLHL 1163
+ Y+S+ G L + T RPDISY V + F+ +P+ H+ + +R++RY+ T + L
Sbjct: 181 TPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKY 240
Query: 1164 YPSTVDKLTTYTDADWGGCPDTRKSTSGYCVYLGDNLVSWSAKR-QPTLSRSSAEAEYRG 1222
+ LT Y DA G D ST GY L V+WS+K+ + + S EAEY
Sbjct: 241 RSGSQVALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEYIT 300
Query: 1223 VANVVSE 1229
+ V E
Sbjct: 301 ASETVME 307
>YJL3_YEAST (P47024) Transposon Ty4 207.7 kDa hypothetical protein
Length = 1803
Score = 115 bits (288), Expect = 8e-25
Identities = 124/518 (23%), Positives = 220/518 (41%), Gaps = 75/518 (14%)
Query: 856 QDHNWKMAMKDEYDALIDNKTWDLVPRPSNANIIRSLWIFRHK---KKADGSFERYKARL 912
+ H +K A E L D K +D+ + S + I +L + + KK +G YKAR+
Sbjct: 1285 EKHEYKQAYHKELQNLKDMKVFDVDVKYSRSEIPDNLIVPTNTIFTKKRNGI---YKARI 1341
Query: 913 VGNGSNQQTGVDCGETFSPVVKPAT----IRTVLSIALSKSWCLHQLDVKNAFLHGNLNE 968
V G Q +T+S + + I+ L IA +++ + LD+ +AFL+ L E
Sbjct: 1342 VCRGDTQSP-----DTYSVITTESLNHNHIKIFLMIANNRNMFMKTLDINHAFLYAKLEE 1396
Query: 969 TVYMYQPPGFRDPQHPDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSHSVCDHSLFI 1028
+Y+ P R V L K+LYGLKQ+P+ W Y+ +G + ++ +
Sbjct: 1397 EIYIPHPHDRR------CVVKLNKALYGLKQSPKEWNDHLRQYLNGIGLKDN--SYTPGL 1448
Query: 1029 YHSGDDTAYILLYVDDIILTASSDTLRQSIMSKLNSEFAMKDLGPL------SYFLGISV 1082
Y + D I +YVDD ++ AS++ ++KL S F +K G L + LG+ +
Sbjct: 1449 YQTEDKNLMIAVYVDDCVIAASNEQRLDEFINKLKSNFELKITGTLIDDVLDTDILGMDL 1508
Query: 1083 T---------------------RHSDDTK-------AKLSGTSGNPYHD-----PSEYR- 1108
+++++ K +S +P D E+R
Sbjct: 1509 VYNKRLGTIDLTLKSFINRMDKKYNEELKKIRKSSIPHMSTYKIDPKKDVLQMSEEEFRQ 1568
Query: 1109 ------SLAGALQYLTF-TRPDISYAVQQVCLFMHDPKTQHMTALKRIIRYIKGTSTHGL 1161
L G L Y+ R DI +AV++V ++ P + + +II+Y+ G+
Sbjct: 1569 GVLKLQQLLGELNYVRHKCRYDIEFAVKKVARLVNYPHERVFYMIYKIIQYLVRYKDIGI 1628
Query: 1162 HLYPSTVD---KLTTYTDADWGGCPDTRKSTSGYCVYLGDNLVSWSAKRQPTLSRSSAEA 1218
H Y + K+ TDA G D +S G ++ G N+ + + + SS EA
Sbjct: 1629 H-YDRDCNKDKKVIAITDASVGSEYDA-QSRIGVILWYGMNIFNVYSNKSTNRCVSSTEA 1686
Query: 1219 EYRGVANVVSESCWLRNLLLELQCPVTKATLVYCDNVSAVYLSGNPIQHQRTKHIEMDIH 1278
E + ++S L+ L EL ++ D+ A+ Q + K +
Sbjct: 1687 ELHAIYEGYADSETLKVTLKELGEGDNNDIVMITDSKPAIQGLNRSYQQPKEKFTWIKTE 1746
Query: 1279 FVREKVARGQVRVMHVPSRYQIADIFTKGLPLQLFDDF 1316
++EK+ ++++ + + IAD+ TK + F F
Sbjct: 1747 IIKEKIKEKSIKLLKITGKGNIADLLTKPVSASDFKRF 1784
Score = 91.3 bits (225), Expect = 2e-17
Identities = 85/294 (28%), Positives = 129/294 (42%), Gaps = 32/294 (10%)
Query: 429 HNRLGHPGVS-ILNSLHRNN---SILCNKFRNNFFCQSCQLGKQIKLPFY----ESLSST 480
H R+GH G+ I NS+ N+ S+ K N F+CQ+C++ K K Y + S+
Sbjct: 562 HKRMGHTGIQQIENSIKHNHYEESLDLIKEPNEFWCQTCKISKATKRNHYTGSMNNHSTD 621
Query: 481 LLPFDIVHSDIWTSPILSSGGH--HYYILFLDDFTDFLWTFPLTNKSQAHSIFLQF---C 535
P DI+ P+ SS Y ++ +D+ T + T NK+ A +I Q
Sbjct: 622 HEPGSSWCMDIF-GPVSSSNADTKRYMLIMVDNNTRYCMTSTHFNKN-AETILAQVRKNI 679
Query: 536 NHIKTQFERDIKCFQCDNGKEYDNSHFHQFCKQNGMIFRFSCPHTSPQNGKVERKIRTIN 595
+++TQF+R ++ D G E+ N ++ G+ + NG+ ER IRTI
Sbjct: 680 QYVETQFDRKVREINSDRGTEFTNDQIEEYFISKGIHHILTSTQDHAANGRAERYIRTII 739
Query: 596 NIIRTLLAHASLPPSFWHHALQMATYLLNI--------LPTKKLALQTPTTILYQKSPSY 647
TLL ++L FW +A+ AT + N LP K ++ Q T L P
Sbjct: 740 TDATTLLRQSNLRVKFWEYAVTSATNIRNYLEHKSTGKLPLKAISRQPVTVRLMSFLP-- 797
Query: 648 SHLKVFGCLCFPLIPSTTRNKLQARSTPCVFLGYPSNHRGYKCFELSSRKIIIS 701
FG +I + KL+ P + L N GYK F S KI+ S
Sbjct: 798 -----FGEK--GIIWNHNHKKLKPSGLPSIILCKDPNSYGYKFFIPSKNKIVTS 844
>YJZ7_YEAST (P47098) Transposon Ty1 protein B
Length = 1755
Score = 110 bits (276), Expect = 2e-23
Identities = 132/600 (22%), Positives = 226/600 (37%), Gaps = 89/600 (14%)
Query: 297 MDTGATSHMTANGGNLTSYS-NISNNITVGSGHNIPVIGCGNALVQNPQYPLTLNNVLHA 355
+D+GA+ + + ++ S S N N+ NIP+ G+ T VLH
Sbjct: 460 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 519
Query: 356 PKLIKNLVSVRKFTIDNEVSVEFDPFGFSVKDFQTGMPLMRCNSSGDLYPLATRPYYPST 415
P + +L+S+ + + + F +V + G L GD Y ++ R PS
Sbjct: 520 PNIAYDLLSLNELAAVDITAC----FTKNVLERSDGTVLAPIVQYGDFYWVSKRYLLPSN 575
Query: 416 ----------TPSTFAALSNEIWHNRLGHPGVSILNSLHRNNSILCNKFRN-------NF 458
T + H L H + +NN+I + ++
Sbjct: 576 ISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDY 635
Query: 459 FCQSCQLGKQIKLPFYES----LSSTLLPFDIVHSDIWTSPI--LSSGGHHYYILFLDDF 512
C C +GK K + ++ PF +H+DI+ P+ L Y+I F D+
Sbjct: 636 QCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIF-GPVHNLPKSAPSYFISFTDET 694
Query: 513 TDFLWTFPLTNKSQAH--SIFLQFCNHIKTQFERDIKCFQCDNGKEYDNSHFHQFCKQNG 570
T F W +PL ++ + +F IK QF+ + Q D G EY N H+F ++NG
Sbjct: 695 TKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNG 754
Query: 571 MIFRFSCPHTSPQNGKVERKIRTINNIIRTLLAHASLPPSFWHHALQMATYLLNILPTKK 630
+ ++ S +G ER RT+ + RT L + LP W A++ +T + N L + K
Sbjct: 755 ITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPK 814
Query: 631 LALQTPTTILYQKSPSYSHLKVFGCLCFPLIP---------STTRNKLQARSTPCVFLGY 681
K + H + G L+P +K+ R P L
Sbjct: 815 -----------SKKSARQHAGLAGLDISTLLPFGQPVIVNDHNPNSKIHPRGIPGYALHP 863
Query: 682 PSNHRGYKCFELSSRKIIISRHVI-------------FDENTFP-------------FSN 715
N GY + S +K + + + + +D TF ++
Sbjct: 864 SRNSYGYIIYLPSLKKTVDTTNYVILQGKESRLDQFNYDALTFDEDLNRLTASYQSFIAS 923
Query: 716 SNIPESSCYNFLDTSD--TPFPYHLFQHTSNLPTNEPNSHDQPPTT--------TATPLT 765
+ I ES+ N D + H Q + L + PP+T + T +
Sbjct: 924 NEIQESNDLNIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIR 983
Query: 766 TPYSINTTTHQPTVAPSPQIQTSPQLTITPNTASPHQIPPPNPLLANPPLSPQMTTRAQH 825
P ++ + + PS + ++PQ++ +T S PLLA P+S T + H
Sbjct: 984 APREVDPNISESNILPSKKRSSTPQISNIESTGSGGMHKLNVPLLA--PMSQSNTHESSH 1041
Score = 97.1 bits (240), Expect = 3e-19
Identities = 124/507 (24%), Positives = 205/507 (39%), Gaps = 69/507 (13%)
Query: 863 AMKDEYDALIDNKTWDLVPRPSNANI-----IRSLWIFRHKKKADGSFERYKARLVGNGS 917
A E + L+ KTWD I I S++IF KK DG+ +KAR V G
Sbjct: 1253 AYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIFN--KKRDGT---HKARFVARGD 1307
Query: 918 NQQTGVDCGETFSPVVKPATIRTVLSIALSKSWCLHQLDVKNAFLHGNLNETVYMYQPPG 977
Q S V + T LS+AL ++ + QLD+ +A+L+ ++ E +Y+ PP
Sbjct: 1308 IQHPDTYDTGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPH 1367
Query: 978 FRDPQHPDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSHSVCDHSLFIYHSGDDTAY 1037
D + LKKS YGLKQ+ WY+ Y+ V S +S
Sbjct: 1368 L---GMNDKLIRLKKSHYGLKQSGANWYETIKSYLIKQCGMEEVRGWSCVFKNS---QVT 1421
Query: 1038 ILLYVDDIILTASSDTLRQSIMSKLNSEFAMK--DLG----PLSY-FLGISVTRHSD--- 1087
I L+VDD+IL + + I++ L ++ K +LG + Y LG+ +
Sbjct: 1422 ICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRGKYM 1481
Query: 1088 -------------------DTKAKLSGTSGNP--YHDPS--------------EYRSLAG 1112
+ K + G P Y D E + L G
Sbjct: 1482 KLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKEKVHEMQKLIG 1541
Query: 1113 ALQYLTFT-RPDISYAVQQVCLFMHDPKTQHMTALKRIIRYIKGTSTHGLHLY---PSTV 1168
Y+ + R D+ Y + + + P Q + +I+++ T L + P+
Sbjct: 1542 LASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEP 1601
Query: 1169 D-KLTTYTDADWGGCPDTRKSTSGYCVYLGDNLVSWSAKRQPTLSRSSAEAEYRGVANVV 1227
D KL +DA +G P KS G L ++ + + S+ EAE ++ V
Sbjct: 1602 DNKLVAISDASYGNQP-YYKSQIGNIFLLNGKVIGGKSTKASLTCTSTTEAEIHAISESV 1660
Query: 1228 SESCWLRNLLLEL-QCPVTKATLVYCDNVSAVYLSGNPIQHQRTKHIEMDIHFVREKVAR 1286
L L+ EL + P+ K L + ++ S N + R + +R++V+
Sbjct: 1661 PLLNNLSYLIQELNKKPIIKGLLTDSRSTISIIKSTNE-EKFRNRFFGTKAMRLRDEVSG 1719
Query: 1287 GQVRVMHVPSRYQIADIFTKGLPLQLF 1313
+ V ++ ++ IAD+ TK LP++ F
Sbjct: 1720 NNLYVYYIETKKNIADVMTKPLPIKTF 1746
>YMT5_YEAST (Q04214) Transposon Ty1 protein B
Length = 1328
Score = 110 bits (274), Expect = 3e-23
Identities = 132/602 (21%), Positives = 229/602 (37%), Gaps = 93/602 (15%)
Query: 297 MDTGATSHMTANGGNLTSYS-NISNNITVGSGHNIPVIGCGNALVQNPQYPLTLNNVLHA 355
+D+GA+ + + ++ S S N N+ NIP+ G+ T VLH
Sbjct: 33 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 92
Query: 356 PKLIKNLVSVRKFTIDNEVSVEFDPFGFSVKDFQTGMPLMRCNSSGDLYPLATRPYYPST 415
P + +L+S+ + + + F +V + G L GD Y ++ + PS
Sbjct: 93 PNIAYDLLSLNELAAVDITAC----FTKNVLERSDGTVLAPIVKYGDFYWVSKKYLLPSN 148
Query: 416 ----------TPSTFAALSNEIWHNRLGHPGVSILNSLHRNNSILCNKFRN-------NF 458
T + H L H + +NN+I + ++
Sbjct: 149 ISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDY 208
Query: 459 FCQSCQLGKQIKLPFYES----LSSTLLPFDIVHSDIWTSPI--LSSGGHHYYILFLDDF 512
C C +GK K + ++ PF +H+DI+ P+ L Y+I F D+
Sbjct: 209 QCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIF-GPVHNLPKSAPSYFISFTDET 267
Query: 513 TDFLWTFPLTNKSQAH--SIFLQFCNHIKTQFERDIKCFQCDNGKEYDNSHFHQFCKQNG 570
T F W +PL ++ + +F IK QF+ + Q D G EY N H+F ++NG
Sbjct: 268 TKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNG 327
Query: 571 MIFRFSCPHTSPQNGKVERKIRTINNIIRTLLAHASLPPSFWHHALQMATYLLNILPTKK 630
+ ++ S +G ER RT+ + RT L + LP W A++ +T + N L + K
Sbjct: 328 ITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPK 387
Query: 631 LALQTPTTILYQKSPSYSHLKVFGCLCFPLIP---------STTRNKLQARSTPCVFLGY 681
K + H + G L+P +K+ R P L
Sbjct: 388 -----------SKKSARQHAGLAGLDISTLLPFGQPVIVNDHNPNSKIHPRGIPGYALHP 436
Query: 682 PSNHRGYKCFELSSRKIIISRHVI-------------FDENTFP-------------FSN 715
N GY + S +K + + + + +D TF ++
Sbjct: 437 SRNSYGYIIYLPSLKKTVDTTNYVILQGKESRLDQFNYDALTFDEDLNRLTASYHSFIAS 496
Query: 716 SNIPESSCYNFLDTSDTPFPYHLFQHTSNL---------PTNE--PNSH-DQPPTTTATP 763
+ I +S+ N SD F + H L PT+ P++H + + T
Sbjct: 497 NEIQQSNDLNI--ESDHDFQSDIELHPEQLRNVLSKAVSPTDSTPPSTHTEDSKRVSKTN 554
Query: 764 LTTPYSINTTTHQPTVAPSPQIQTSPQLTITPNTASPHQIPPPNPLLANPPLSPQMTTRA 823
+ P ++ + + PS + ++PQ++ +T S PLLA P+S T +
Sbjct: 555 IRAPREVDPNISESNILPSKKRSSTPQISDIESTGSGGMHRLDVPLLA--PMSQSNTHES 612
Query: 824 QH 825
H
Sbjct: 613 SH 614
Score = 108 bits (271), Expect = 7e-23
Identities = 125/507 (24%), Positives = 208/507 (40%), Gaps = 69/507 (13%)
Query: 863 AMKDEYDALIDNKTWDLVPRPSNANI-----IRSLWIFRHKKKADGSFERYKARLVGNGS 917
A E + L+ KTWD I I S++IF K+ DG+ +KAR V G
Sbjct: 826 AYHKEVNQLLKMKTWDTDKYYDRKEIDPKRVINSMFIFNRKR--DGT---HKARFVARGD 880
Query: 918 NQQTGVDCGETFSPVVKPATIRTVLSIALSKSWCLHQLDVKNAFLHGNLNETVYMYQPPG 977
Q S V + T LS+AL ++ + QLD+ +A+L+ ++ E +Y+ PP
Sbjct: 881 IQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPH 940
Query: 978 FRDPQHPDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSHSVCDHSLFIYHSGDDTAY 1037
D + LKKSLYGLKQ+ WY+ Y+ V S +S
Sbjct: 941 L---GMNDKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRGWSCVFENS---QVT 994
Query: 1038 ILLYVDDIILTASSDTLRQSIMSKLNSEFAMK--DLG----PLSY-FLGISVTRHSD--- 1087
I L+VDD++L + + + I+ KL ++ K +LG + Y LG+ +
Sbjct: 995 ICLFVDDMVLFSKNLNSNKRIIDKLKMQYDTKIINLGESDEEIQYDILGLEIKYQRGKYM 1054
Query: 1088 -------------------DTKAKLSGTSGNP--YHDPS--------------EYRSLAG 1112
+ K + G P Y D E + L G
Sbjct: 1055 KLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELELEEDDYKMKVHEMQKLIG 1114
Query: 1113 ALQYLTFT-RPDISYAVQQVCLFMHDPKTQHMTALKRIIRYIKGTSTHGLHLYPS----T 1167
Y+ + R D+ Y + + + P Q + +I++I T L + S
Sbjct: 1115 LASYVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRDKQLIWHKSKPVKP 1174
Query: 1168 VDKLTTYTDADWGGCPDTRKSTSGYCVYLGDNLVSWSAKRQPTLSRSSAEAEYRGVANVV 1227
+KL +DA +G P KS G L ++ + + S+ EAE ++ V
Sbjct: 1175 TNKLVVISDASYGNQP-YYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAEIHAISESV 1233
Query: 1228 SESCWLRNLLLEL-QCPVTKATLVYCDNVSAVYLSGNPIQHQRTKHIEMDIHFVREKVAR 1286
L L+ EL + P+TK L + ++ +S N + R + +R++V+
Sbjct: 1234 PLLNNLSYLIQELDKKPITKGLLTDSKSTISIIISNNE-EKFRNRFFGTKAMRLRDEVSG 1292
Query: 1287 GQVRVMHVPSRYQIADIFTKGLPLQLF 1313
+ V ++ ++ IAD+ TK LP++ F
Sbjct: 1293 NHLHVCYIETKKNIADVMTKPLPIKTF 1319
>YJZ9_YEAST (P47100) Transposon Ty1 protein B
Length = 1755
Score = 110 bits (274), Expect = 3e-23
Identities = 168/739 (22%), Positives = 277/739 (36%), Gaps = 159/739 (21%)
Query: 712 PFSNSNIPESSCYNFLDTSDTPFPYHLFQHTSNLPTNEPNSHDQPPTTTA--TPLTTPYS 769
P S SN ESS + + D F+H+ + NE N + P ++T T P
Sbjct: 1030 PMSQSNTHESS--HASKSKD-------FRHSDSYSENETNHTNVPISSTGGTNNKTVPQI 1080
Query: 770 INTTTHQPTVAPSPQIQTSPQLTI---------TPNTASPHQ-------------IPP-- 805
+ T + + SP I SP TP T S +PP
Sbjct: 1081 SDQETEKRIIHRSPSIDASPPENNSSHNIVPIKTPTTVSEQNTEESIIADLPLPDLPPES 1140
Query: 806 ----PNPLLANPPLSPQMT--------------------------------------TRA 823
P+P PP++ + T T+
Sbjct: 1141 PTEFPDPFKELPPINSRQTNSSLGGIGDSNAYTTINSKKRSLEDNETEIKVSRDTWNTKN 1200
Query: 824 QHGIFKPRQLLNLHTSSS----NQISPLPTN-PINALQDHNWKMAMKDEY--------DA 870
+ PR +H ++ I P+ T + +N + K++Y +
Sbjct: 1201 MRSLEPPRSKKRIHLIAAVKAVKSIKPIRTTLRYDEAITYNKDIKEKEKYIEAYHKEVNQ 1260
Query: 871 LIDNKTWDLVPRPSNANI-----IRSLWIFRHKKKADGSFERYKARLVGNGSNQQTGVDC 925
L+ KTWD I I S++IF KK DG+ +KAR V G Q
Sbjct: 1261 LLKMKTWDTDEYYDRKEIDPKRVINSMFIFN--KKRDGT---HKARFVARGDIQHPDTYD 1315
Query: 926 GETFSPVVKPATIRTVLSIALSKSWCLHQLDVKNAFLHGNLNETVYMYQPPGFRDPQHPD 985
S V + T LS+AL ++ + QLD+ +A+L+ ++ E +Y+ PP D
Sbjct: 1316 SGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHL---GMND 1372
Query: 986 YVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSHSVCDHSLFIYHSGDDTAYILLYVDDI 1045
+ LKKSLYGLKQ+ WY+ Y+ V S +S I L+VDD+
Sbjct: 1373 KLIRLKKSLYGLKQSGANWYETIKSYLIQQCGMEEVRGWSCVFKNS---QVTICLFVDDM 1429
Query: 1046 ILTASSDTLRQSIMSKLNSEFAMK--DLG----PLSY-FLGISVTRHSD----------- 1087
+L + + + I+ KL ++ K +LG + Y LG+ +
Sbjct: 1430 VLFSKNLNSNKRIIEKLKMQYDTKIINLGESDEEIQYDILGLEIKYQRGKYMKLGMENSL 1489
Query: 1088 -----------DTKAKLSGTSGNP--YHDPS--------------EYRSLAGALQYLTFT 1120
+ K + G P Y D E + L G Y+ +
Sbjct: 1490 TEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELELEEDDYKMKVHEMQKLIGLASYVGYK 1549
Query: 1121 -RPDISYAVQQVCLFMHDPKTQHMTALKRIIRYIKGTSTHGLHLYPS----TVDKLTTYT 1175
R D+ Y + + + P Q + +I++I T L + S +KL +
Sbjct: 1550 FRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRDKQLIWHKSKPVKPTNKLVVIS 1609
Query: 1176 DADWGGCPDTRKSTSGYCVYLGDNLVSWSAKRQPTLSRSSAEAEYRGVANVVSESCWLRN 1235
DA +G P KS G L ++ + + S+ EAE ++ V L
Sbjct: 1610 DASYGNQP-YYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLLNNLSY 1668
Query: 1236 LLLEL-QCPVTKATLVYCDNVSAVYLSGNPIQHQRTKHIEMDIHFVREKVARGQVRVMHV 1294
L+ EL + P+TK L + ++ +S N + R + +R++V+ + V ++
Sbjct: 1669 LIQELDKKPITKGLLTDSKSTISIIISNNE-EKFRNRFFGTKAMRLRDEVSGNHLHVCYI 1727
Query: 1295 PSRYQIADIFTKGLPLQLF 1313
++ IAD+ TK LP++ F
Sbjct: 1728 ETKKNIADVMTKPLPIKTF 1746
Score = 108 bits (269), Expect = 1e-22
Identities = 130/600 (21%), Positives = 225/600 (36%), Gaps = 89/600 (14%)
Query: 297 MDTGATSHMTANGGNLTSYS-NISNNITVGSGHNIPVIGCGNALVQNPQYPLTLNNVLHA 355
+D+GA+ + + ++ S S N N+ NIP+ G+ T VLH
Sbjct: 460 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 519
Query: 356 PKLIKNLVSVRKFTIDNEVSVEFDPFGFSVKDFQTGMPLMRCNSSGDLYPLATRPYYPST 415
P + +L+S+ + + + F +V + G L GD Y ++ + PS
Sbjct: 520 PNIAYDLLSLNELAAVDITAC----FTKNVLERSDGTVLAPIVKYGDFYWVSKKYLLPSN 575
Query: 416 ----------TPSTFAALSNEIWHNRLGHPGVSILNSLHRNNSILCNKFRN-------NF 458
T + H L H + +NN+I + ++
Sbjct: 576 ISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDY 635
Query: 459 FCQSCQLGKQIKLPFYES----LSSTLLPFDIVHSDIWTSPI--LSSGGHHYYILFLDDF 512
C C +GK K + ++ PF +H+DI+ P+ L Y+I F D+
Sbjct: 636 QCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIF-GPVHNLPKSAPSYFISFTDET 694
Query: 513 TDFLWTFPLTNKSQAH--SIFLQFCNHIKTQFERDIKCFQCDNGKEYDNSHFHQFCKQNG 570
T F W +PL ++ + +F IK QF+ + Q D G EY N H+F ++NG
Sbjct: 695 TKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNG 754
Query: 571 MIFRFSCPHTSPQNGKVERKIRTINNIIRTLLAHASLPPSFWHHALQMATYLLNILPTKK 630
+ ++ S +G ER RT+ + RT L + LP W A++ +T + N L + K
Sbjct: 755 ITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPK 814
Query: 631 LALQTPTTILYQKSPSYSHLKVFGCLCFPLIP---------STTRNKLQARSTPCVFLGY 681
K + H + G L+P +K+ R P L
Sbjct: 815 -----------SKKSARQHAGLAGLDISTLLPFGQPVIVNDHNPNSKIHPRGIPGYALHP 863
Query: 682 PSNHRGYKCFELSSRKIIISRHVI-------------FDENTFP-------------FSN 715
N GY + S +K + + + + +D TF ++
Sbjct: 864 SRNSYGYIIYLPSLKKTVDTTNYVILQGKESRLDQFNYDALTFDEDLNRLTASYQSFIAS 923
Query: 716 SNIPESSCYNFLDTSD--TPFPYHLFQHTSNLPTNEPNSHDQPPTT--------TATPLT 765
+ I +S N D + H Q + L + PP+T + T +
Sbjct: 924 NEIQQSDDLNIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIR 983
Query: 766 TPYSINTTTHQPTVAPSPQIQTSPQLTITPNTASPHQIPPPNPLLANPPLSPQMTTRAQH 825
P ++ + + PS + ++PQ++ +T S PLLA P+S T + H
Sbjct: 984 APREVDPNISESNILPSKKRSSTPQISNIESTGSGGMHKLNVPLLA--PMSQSNTHESSH 1041
>YMU0_YEAST (Q04670) Transposon Ty1 protein B
Length = 1328
Score = 108 bits (271), Expect = 7e-23
Identities = 167/744 (22%), Positives = 279/744 (37%), Gaps = 169/744 (22%)
Query: 712 PFSNSNIPESSCYNFLDTSDTPFPYHLFQHTSNLPTNEPNSHDQPPTTTA--TPLTTPYS 769
P S SN ESS + + D F+H+ + NE N + P ++T T P
Sbjct: 603 PMSQSNTHESS--HASKSKD-------FRHSDSYSENETNHTNVPISSTGGTNNKTVPQI 653
Query: 770 INTTTHQPTVAPSPQIQTSPQLTI---------TPNTASPHQ-------------IPP-- 805
+ T + + SP I SP TP T S +PP
Sbjct: 654 SDQETEKRIIHRSPSIDASPPENNSSHNIVPIKTPTTVSEQNTEESIIADLPLPDLPPES 713
Query: 806 ----PNPLLANPPLSPQMT--------------------------------------TRA 823
P+P PP++ + T T+
Sbjct: 714 PTEFPDPFKELPPINSRQTNSSLGGIGDSNAYTTINSKKRSLEDNETEIKVSRDTWNTKN 773
Query: 824 QHGIFKPRQLLNLHTSSS----NQISPLPTN---------PINALQDHNWKMAMKDEYDA 870
+ PR +H ++ I P+ T + + + A E +
Sbjct: 774 MRSLEPPRSKKRIHLIAAVKAVKSIKPIRTTLRYDEAITYNKDIKEKEKYIQAYHKEVNQ 833
Query: 871 LIDNKTWDLVPRPSNANI-----IRSLWIFRHKKKADGSFERYKARLVGNGSNQQTGVDC 925
L+ KTWD I I S++IF K+ DG+ +KAR V G Q
Sbjct: 834 LLKMKTWDTDRYYDRKEIDPKRVINSMFIFNRKR--DGT---HKARFVARGDIQHP---- 884
Query: 926 GETFSPVVKPATIR-----TVLSIALSKSWCLHQLDVKNAFLHGNLNETVYMYQPPGFRD 980
+T+ P ++ T+ T LS+AL ++ + QLD+ +A+L+ ++ E +Y+ PP
Sbjct: 885 -DTYDPGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPHL-- 941
Query: 981 PQHPDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSHSVCDHSLFIYHSGDDTAYILL 1040
D + LKKSLYGLKQ+ WY+ Y+ V S +S I L
Sbjct: 942 -GMNDKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRGWSCVFKNS---QVTICL 997
Query: 1041 YVDDIILTASSDTLRQSIMSKLNSEFAMK--DLG----PLSY-FLGISVTRHSD------ 1087
+VDD+IL + + I++ L ++ K +LG + Y LG+ +
Sbjct: 998 FVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRGKYMKLG 1057
Query: 1088 ----------------DTKAKLSGTSGNP--YHDPS--------------EYRSLAGALQ 1115
+ K + G P Y D E + L G
Sbjct: 1058 MENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQQELELEEDDYKMKVHEMQKLIGLAS 1117
Query: 1116 YLTFT-RPDISYAVQQVCLFMHDPKTQHMTALKRIIRYIKGTSTHGLHLYPS----TVDK 1170
Y+ + R D+ Y + + + P Q + +I++I T L + S +K
Sbjct: 1118 YVGYKFRFDLLYYINTLAQHILFPSKQVLDMTYELIQFIWNTRDKQLIWHKSKPVKPTNK 1177
Query: 1171 LTTYTDADWGGCPDTRKSTSGYCVYLGDNLVSWSAKRQPTLSRSSAEAEYRGVANVVSES 1230
L +DA +G P KS G L ++ + + S+ EAE ++ V
Sbjct: 1178 LVVISDASYGNQP-YYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAEIHAISESVPLL 1236
Query: 1231 CWLRNLLLEL-QCPVTKATLVYCDNVSAVYLSGNPIQHQRTKHIEMDIHFVREKVARGQV 1289
L +L+ EL + P+TK L + ++ +S N + R + +R++V+ +
Sbjct: 1237 NNLSHLVQELNKKPITKGLLTDSKSTISIIISNNE-EKFRNRFFGTKAMRLRDEVSGNHL 1295
Query: 1290 RVMHVPSRYQIADIFTKGLPLQLF 1313
V ++ ++ IAD+ TK LP++ F
Sbjct: 1296 HVCYIETKKNIADVMTKPLPIKTF 1319
Score = 108 bits (269), Expect = 1e-22
Identities = 130/600 (21%), Positives = 225/600 (36%), Gaps = 89/600 (14%)
Query: 297 MDTGATSHMTANGGNLTSYS-NISNNITVGSGHNIPVIGCGNALVQNPQYPLTLNNVLHA 355
+D+GA+ + + ++ S S N N+ NIP+ G+ T VLH
Sbjct: 33 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 92
Query: 356 PKLIKNLVSVRKFTIDNEVSVEFDPFGFSVKDFQTGMPLMRCNSSGDLYPLATRPYYPST 415
P + +L+S+ + + + F +V + G L GD Y ++ + PS
Sbjct: 93 PNIAYDLLSLNELAAVDITAC----FTKNVLERSDGTVLAPIVKYGDFYWVSKKYLLPSN 148
Query: 416 ----------TPSTFAALSNEIWHNRLGHPGVSILNSLHRNNSILCNKFRN-------NF 458
T + H L H + +NN+I + ++
Sbjct: 149 ISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDY 208
Query: 459 FCQSCQLGKQIKLPFYES----LSSTLLPFDIVHSDIWTSPI--LSSGGHHYYILFLDDF 512
C C +GK K + ++ PF +H+DI+ P+ L Y+I F D+
Sbjct: 209 QCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIF-GPVHNLPKSAPSYFISFTDET 267
Query: 513 TDFLWTFPLTNKSQAH--SIFLQFCNHIKTQFERDIKCFQCDNGKEYDNSHFHQFCKQNG 570
T F W +PL ++ + +F IK QF+ + Q D G EY N H+F ++NG
Sbjct: 268 TKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNG 327
Query: 571 MIFRFSCPHTSPQNGKVERKIRTINNIIRTLLAHASLPPSFWHHALQMATYLLNILPTKK 630
+ ++ S +G ER RT+ + RT L + LP W A++ +T + N L + K
Sbjct: 328 ITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPK 387
Query: 631 LALQTPTTILYQKSPSYSHLKVFGCLCFPLIP---------STTRNKLQARSTPCVFLGY 681
K + H + G L+P +K+ R P L
Sbjct: 388 -----------SKKSARQHAGLAGLDISTLLPFGQPVIVNDHNPNSKIHPRGIPGYALHP 436
Query: 682 PSNHRGYKCFELSSRKIIISRHVI-------------FDENTFP-------------FSN 715
N GY + S +K + + + + +D TF ++
Sbjct: 437 SRNSYGYIIYLPSLKKTVDTTNYVILQGKESRLDQFNYDALTFDEDLNRLTASYQSFIAS 496
Query: 716 SNIPESSCYNFLDTSD--TPFPYHLFQHTSNLPTNEPNSHDQPPTT--------TATPLT 765
+ I +S N D + H Q + L + PP+T + T +
Sbjct: 497 NEIQQSDDLNIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIR 556
Query: 766 TPYSINTTTHQPTVAPSPQIQTSPQLTITPNTASPHQIPPPNPLLANPPLSPQMTTRAQH 825
P ++ + + PS + ++PQ++ +T S PLLA P+S T + H
Sbjct: 557 APREVDPNISESNILPSKKRSSTPQISNIESTGSGGMHKLNVPLLA--PMSQSNTHESSH 614
>YMD9_YEAST (Q03434) Transposon Ty1 protein B
Length = 1328
Score = 108 bits (270), Expect = 1e-22
Identities = 130/600 (21%), Positives = 225/600 (36%), Gaps = 89/600 (14%)
Query: 297 MDTGATSHMTANGGNLTSYS-NISNNITVGSGHNIPVIGCGNALVQNPQYPLTLNNVLHA 355
+D+GA+ + + ++ S S N N+ NIP+ G+ T VLH
Sbjct: 33 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 92
Query: 356 PKLIKNLVSVRKFTIDNEVSVEFDPFGFSVKDFQTGMPLMRCNSSGDLYPLATRPYYPST 415
P + +L+S+ + + + F +V + G L GD Y ++ + PS
Sbjct: 93 PNIAYDLLSLNELAAVDITAC----FTKNVLERSDGTVLAPIVKYGDFYWVSKKYLLPSN 148
Query: 416 ----------TPSTFAALSNEIWHNRLGHPGVSILNSLHRNNSI-------LCNKFRNNF 458
T + H L H + +NN+I + ++
Sbjct: 149 ISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDRSSAIDY 208
Query: 459 FCQSCQLGKQIKLPFYES----LSSTLLPFDIVHSDIWTSPI--LSSGGHHYYILFLDDF 512
C C +GK K + ++ PF +H+DI+ P+ L Y+I F D+
Sbjct: 209 QCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIF-GPVHNLPKSAPSYFISFTDET 267
Query: 513 TDFLWTFPLTNKSQAH--SIFLQFCNHIKTQFERDIKCFQCDNGKEYDNSHFHQFCKQNG 570
T F W +PL ++ + +F IK QF+ + Q D G EY N H+F ++NG
Sbjct: 268 TKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNG 327
Query: 571 MIFRFSCPHTSPQNGKVERKIRTINNIIRTLLAHASLPPSFWHHALQMATYLLNILPTKK 630
+ ++ S +G ER RT+ + RT L + LP W A++ +T + N L + K
Sbjct: 328 ITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPK 387
Query: 631 LALQTPTTILYQKSPSYSHLKVFGCLCFPLIP---------STTRNKLQARSTPCVFLGY 681
K + H + G L+P +K+ R P L
Sbjct: 388 -----------SKKSARQHAGLAGLDISTLLPFGQPVIVNDHNPNSKIHPRGIPGYALHP 436
Query: 682 PSNHRGYKCFELSSRKIIISRHVI-------------FDENTFP-------------FSN 715
N GY + S +K + + + + +D TF ++
Sbjct: 437 SRNSYGYIIYLPSLKKTVDTTNYVILQGKESRLDQFNYDALTFDEDLNRLTASYQSFIAS 496
Query: 716 SNIPESSCYNFLDTSD--TPFPYHLFQHTSNLPTNEPNSHDQPPTT--------TATPLT 765
+ I +S N D + H Q + L + PP+T + T +
Sbjct: 497 NEIQQSDDLNIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIR 556
Query: 766 TPYSINTTTHQPTVAPSPQIQTSPQLTITPNTASPHQIPPPNPLLANPPLSPQMTTRAQH 825
P ++ + + PS + ++PQ++ +T S PLLA P+S T + H
Sbjct: 557 APREVDPNISESNILPSKKRSSTPQISNIESTGSGGMHKLNVPLLA--PMSQSNTHESSH 614
Score = 100 bits (249), Expect = 3e-20
Identities = 125/507 (24%), Positives = 206/507 (39%), Gaps = 69/507 (13%)
Query: 863 AMKDEYDALIDNKTWDLVPRPSNANI-----IRSLWIFRHKKKADGSFERYKARLVGNGS 917
A E + L+ KTWD I I S++IF KK DG+ +KAR V G
Sbjct: 826 AYHKEVNQLLKMKTWDTDEYYDRKEIDPKRVINSMFIFN--KKRDGT---HKARFVARGD 880
Query: 918 NQQTGVDCGETFSPVVKPATIRTVLSIALSKSWCLHQLDVKNAFLHGNLNETVYMYQPPG 977
Q S V + T LS+AL ++ + QLD+ +A+L+ ++ E +Y+ PP
Sbjct: 881 IQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPH 940
Query: 978 FRDPQHPDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSHSVCDHSLFIYHSGDDTAY 1037
D + LKKSLYGLKQ+ WY+ Y+ V S +S
Sbjct: 941 L---GMNDKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRGWSCVFKNS---QVT 994
Query: 1038 ILLYVDDIILTASSDTLRQSIMSKLNSEFAMK--DLG----PLSY-FLGISVTRHSD--- 1087
I L+VDD+IL + + I++ L ++ K +LG + Y LG+ +
Sbjct: 995 ICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRGKYM 1054
Query: 1088 -------------------DTKAKLSGTSGNP--YHDPS--------------EYRSLAG 1112
+ K + G P Y D E + L G
Sbjct: 1055 KLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKEKVHEMQKLIG 1114
Query: 1113 ALQYLTFT-RPDISYAVQQVCLFMHDPKTQHMTALKRIIRYIKGTSTHGLHLY---PSTV 1168
Y+ + R D+ Y + + + P Q + +I+++ T L + P+
Sbjct: 1115 LASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEP 1174
Query: 1169 D-KLTTYTDADWGGCPDTRKSTSGYCVYLGDNLVSWSAKRQPTLSRSSAEAEYRGVANVV 1227
D KL +DA +G P KS G L ++ + + S+ EAE ++ V
Sbjct: 1175 DNKLVAISDASYGNQP-YYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAEIHAISESV 1233
Query: 1228 SESCWLRNLLLEL-QCPVTKATLVYCDNVSAVYLSGNPIQHQRTKHIEMDIHFVREKVAR 1286
L L+ EL + P+ K L + ++ S N + R + +R++V+
Sbjct: 1234 PLLNNLSYLIQELNKKPIIKGLLTDSRSTISIIKSTNE-EKFRNRFFGTKAMRLRDEVSG 1292
Query: 1287 GQVRVMHVPSRYQIADIFTKGLPLQLF 1313
+ V ++ ++ IAD+ TK LP++ F
Sbjct: 1293 NNLYVYYIETKKNIADVMTKPLPIKTF 1319
>YME4_YEAST (Q04711) Transposon Ty1 protein B
Length = 1328
Score = 108 bits (269), Expect = 1e-22
Identities = 130/600 (21%), Positives = 225/600 (36%), Gaps = 89/600 (14%)
Query: 297 MDTGATSHMTANGGNLTSYS-NISNNITVGSGHNIPVIGCGNALVQNPQYPLTLNNVLHA 355
+D+GA+ + + ++ S S N N+ NIP+ G+ T VLH
Sbjct: 33 LDSGASRTLIRSAHHIHSASSNPDINVVDAQKRNIPINAIGDLQFHFQDNTKTSIKVLHT 92
Query: 356 PKLIKNLVSVRKFTIDNEVSVEFDPFGFSVKDFQTGMPLMRCNSSGDLYPLATRPYYPST 415
P + +L+S+ + + + F +V + G L GD Y ++ + PS
Sbjct: 93 PNIAYDLLSLNELAAVDITAC----FTKNVLERSDGTVLAPIVKYGDFYWVSKKYLLPSN 148
Query: 416 ----------TPSTFAALSNEIWHNRLGHPGVSILNSLHRNNSILCNKFRN-------NF 458
T + H L H + +NN+I + ++
Sbjct: 149 ISVPTINNVHTSESTRKYPYPFIHRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDY 208
Query: 459 FCQSCQLGKQIKLPFYES----LSSTLLPFDIVHSDIWTSPI--LSSGGHHYYILFLDDF 512
C C +GK K + ++ PF +H+DI+ P+ L Y+I F D+
Sbjct: 209 QCPDCLIGKSTKHRHIKGSRLKYQNSYEPFQYLHTDIF-GPVHNLPKSAPSYFISFTDET 267
Query: 513 TDFLWTFPLTNKSQAH--SIFLQFCNHIKTQFERDIKCFQCDNGKEYDNSHFHQFCKQNG 570
T F W +PL ++ + +F IK QF+ + Q D G EY N H+F ++NG
Sbjct: 268 TKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNG 327
Query: 571 MIFRFSCPHTSPQNGKVERKIRTINNIIRTLLAHASLPPSFWHHALQMATYLLNILPTKK 630
+ ++ S +G ER RT+ + RT L + LP W A++ +T + N L + K
Sbjct: 328 ITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPK 387
Query: 631 LALQTPTTILYQKSPSYSHLKVFGCLCFPLIP---------STTRNKLQARSTPCVFLGY 681
K + H + G L+P +K+ R P L
Sbjct: 388 -----------SKKSARQHAGLAGLDISTLLPFGQPVIVNDHNPNSKIHPRGIPGYALHP 436
Query: 682 PSNHRGYKCFELSSRKIIISRHVI-------------FDENTFP-------------FSN 715
N GY + S +K + + + + +D TF ++
Sbjct: 437 SRNSYGYIIYLPSLKKTVDTTNYVILQGKESRLDQFNYDALTFDEDLNRLTASYQSFIAS 496
Query: 716 SNIPESSCYNFLDTSD--TPFPYHLFQHTSNLPTNEPNSHDQPPTT--------TATPLT 765
+ I +S N D + H Q + L + PP+T + T +
Sbjct: 497 NEIQQSDDLNIESDHDFQSDIELHPEQPRNVLSKAVSPTDSTPPSTHTEDSKRVSKTNIR 556
Query: 766 TPYSINTTTHQPTVAPSPQIQTSPQLTITPNTASPHQIPPPNPLLANPPLSPQMTTRAQH 825
P ++ + + PS + ++PQ++ +T S PLLA P+S T + H
Sbjct: 557 APREVDPNISESNILPSKKRSSTPQISNIESTGSGGMHKLNVPLLA--PMSQSNTHESSH 614
Score = 104 bits (259), Expect = 2e-21
Identities = 124/507 (24%), Positives = 208/507 (40%), Gaps = 69/507 (13%)
Query: 863 AMKDEYDALIDNKTWDLVPRPSNANI-----IRSLWIFRHKKKADGSFERYKARLVGNGS 917
A E + L+ TWD I I S++IF K+ DG+ +KAR V G
Sbjct: 826 AYHKEVNQLLKMNTWDTDKYYDRKEIDPKRVINSMFIFNRKR--DGT---HKARFVARGD 880
Query: 918 NQQTGVDCGETFSPVVKPATIRTVLSIALSKSWCLHQLDVKNAFLHGNLNETVYMYQPPG 977
Q S V + T LS+AL ++ + QLD+ +A+L+ ++ E +Y+ PP
Sbjct: 881 IQHPDTYDSGMQSNTVHHYALMTSLSLALDNNYYITQLDISSAYLYADIKEELYIRPPPH 940
Query: 978 FRDPQHPDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSHSVCDHSLFIYHSGDDTAY 1037
D + LKKSLYGLKQ+ WY+ Y+ V S +S
Sbjct: 941 L---GMNDKLIRLKKSLYGLKQSGANWYETIKSYLIKQCGMEEVRGWSCVFKNS---QVT 994
Query: 1038 ILLYVDDIILTASSDTLRQSIMSKLNSEFAMK--DLG----PLSY-FLGISVTRHSD--- 1087
I L+VDD+IL + + I++ L ++ K +LG + Y LG+ +
Sbjct: 995 ICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRGKYM 1054
Query: 1088 -------------------DTKAKLSGTSGNP--YHDPS--------------EYRSLAG 1112
+ K + G P Y D E + L G
Sbjct: 1055 KLGMENSLTEKIPKLNVPLNPKGRKLSAPGQPGLYIDQDELEIDEDEYKEKVHEMQKLIG 1114
Query: 1113 ALQYLTFT-RPDISYAVQQVCLFMHDPKTQHMTALKRIIRYIKGTSTHGLHLY---PSTV 1168
Y+ + R D+ Y + + + P Q + +I+++ T L + P+
Sbjct: 1115 LASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPTEP 1174
Query: 1169 D-KLTTYTDADWGGCPDTRKSTSGYCVYLGDNLVSWSAKRQPTLSRSSAEAEYRGVANVV 1227
D KL +DA +G P KS G L ++ + + S+ EAE ++ V
Sbjct: 1175 DNKLVAISDASYGNQP-YYKSQIGNIYLLNGKVIGGKSTKASLTCTSTTEAEIHAISESV 1233
Query: 1228 SESCWLRNLLLEL-QCPVTKATLVYCDNVSAVYLSGNPIQHQRTKHIEMDIHFVREKVAR 1286
L +L+ EL + P+TK L + ++ +S N + R + +R++V+
Sbjct: 1234 PLLNNLSHLVQELNKKPITKGLLTDSKSTISIIISNNE-EKFRNRFFGTKAMRLRDEVSG 1292
Query: 1287 GQVRVMHVPSRYQIADIFTKGLPLQLF 1313
+ V ++ ++ IAD+ TK LP++ F
Sbjct: 1293 NHLHVCYIETKKNIADVMTKPLPIKTF 1319
>M820_ARATH (P92520) Hypothetical mitochondrial protein AtMg00820
(ORF170)
Length = 170
Score = 107 bits (268), Expect = 2e-22
Identities = 59/129 (45%), Positives = 83/129 (63%), Gaps = 6/129 (4%)
Query: 819 MTTRAQHGIFK--PRQLLNLHTSSSNQISPLPTNPINALQDHNWKMAMKDEYDALIDNKT 876
M TR++ GI K P+ L + T+ + P + I AL+D W AM++E DAL NKT
Sbjct: 1 MLTRSKAGINKLNPKYSLTITTTIKKE----PKSVIFALKDPGWCQAMQEELDALSRNKT 56
Query: 877 WDLVPRPSNANIIRSLWIFRHKKKADGSFERYKARLVGNGSNQQTGVDCGETFSPVVKPA 936
W LVP P N NI+ W+F+ K +DG+ +R KARLV G +Q+ G+ ET+SPVV+ A
Sbjct: 57 WILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTA 116
Query: 937 TIRTVLSIA 945
TIRT+L++A
Sbjct: 117 TIRTILNVA 125
>YCB9_YEAST (P25384) Transposon Ty2 protein B (Ty1-17 protein B)
Length = 1770
Score = 105 bits (263), Expect = 6e-22
Identities = 127/509 (24%), Positives = 208/509 (39%), Gaps = 73/509 (14%)
Query: 863 AMKDEYDALIDNKTWDLVPRPSNANI-----IRSLWIFRHKKKADGSFERYKARLVGNGS 917
A E L+ TWD +I I S++IF KK DG+ +KAR V G
Sbjct: 1268 AYHKEISQLLKMNTWDTNKYYDRNDIDPKKVINSMFIFN--KKRDGT---HKARFVARGD 1322
Query: 918 NQQTGVDCGETFSPVVKPATIRTVLSIALSKSWCLHQLDVKNAFLHGNLNETVYMYQPP- 976
Q + S V + T LSIAL + + QLD+ +A+L+ ++ E +Y+ PP
Sbjct: 1323 IQHPDTYDSDMQSNTVHHYALMTSLSIALDNDYYITQLDISSAYLYADIKEELYIRPPPH 1382
Query: 977 -GFRDPQHPDYVCLLKKSLYGLKQAPRAWYQRFTDYVATLGFSHSVCDHSLFIYHSGDDT 1035
G D + L+KSLYGLKQ+ WY+ Y+ V S +S
Sbjct: 1383 LGLNDK-----LLRLRKSLYGLKQSGANWYETIKSYLINCCDMQEVRGWSCVFKNS---Q 1434
Query: 1036 AYILLYVDDIILTASSDTLRQSIMSKLNSEFAMK--DLG----PLSY-FLGISVTRHSD- 1087
I L+VDD+IL + + I++ L ++ K +LG + Y LG+ +
Sbjct: 1435 VTICLFVDDMILFSKDLNANKKIITTLKKQYDTKIINLGESDNEIQYDILGLEIKYQRSK 1494
Query: 1088 ---------------------DTKAKLSGTSGNPYH---------DPSEYR-------SL 1110
+ K K G P H D EY+ L
Sbjct: 1495 YMKLGMEKSLTEKLPKLNVPLNPKGKKLRAPGQPGHYIDQDELEIDEDEYKEKVHEMQKL 1554
Query: 1111 AGALQYLTFT-RPDISYAVQQVCLFMHDPKTQHMTALKRIIRYIKGTSTHGLHLY---PS 1166
G Y+ + R D+ Y + + + P Q + +I+++ T L + P+
Sbjct: 1555 IGLASYVGYKFRFDLLYYINTLAQHILFPSRQVLDMTYELIQFMWDTRDKQLIWHKNKPT 1614
Query: 1167 TVD-KLTTYTDADWGGCPDTRKSTSGYCVYLGDNLVSWSAKRQPTLSRSSAEAEYRGVAN 1225
D KL +DA +G P KS G L ++ + + S+ EAE V+
Sbjct: 1615 KPDNKLVAISDASYGNQP-YYKSQIGNIFLLNGKVIGGKSTKASLTCTSTTEAEIHAVSE 1673
Query: 1226 VVSESCWLRNLLLEL-QCPVTKATLVYCDNVSAVYLSGNPIQHQRTKHIEMDIHFVREKV 1284
+ L +L+ EL + P+ K L + ++ S N + R + +R++V
Sbjct: 1674 AIPLLNNLSHLVQELNKKPIIKGLLTDSRSTISIIKSTNE-EKFRNRFFGTKAMRLRDEV 1732
Query: 1285 ARGQVRVMHVPSRYQIADIFTKGLPLQLF 1313
+ + V ++ ++ IAD+ TK LP++ F
Sbjct: 1733 SGNNLYVYYIETKKNIADVMTKPLPIKTF 1761
Score = 98.2 bits (243), Expect = 1e-19
Identities = 91/364 (25%), Positives = 144/364 (39%), Gaps = 39/364 (10%)
Query: 297 MDTGATSHMTANGGNLTSYS-NISNNITVGSGHNIPVIGCGNALVQNPQYPLTLNNVLHA 355
+D+GA+ + + L + N NI +IP+ GN T LH
Sbjct: 456 IDSGASQTLVRSAHYLHHATPNSEINIVDAQKQDIPINAIGNLHFNFQNGTKTSIKALHT 515
Query: 356 PKLIKNLVSVRKFTIDNEVSVEFDPFGFSVKDFQTGMPLMRCNSSGDLYPLATRPYYPST 415
P + +L+S+ + N + F + + G L GD Y L+ + PS
Sbjct: 516 PNIAYDLLSLSELANQNITAC----FTRNTLERSDGTVLAPIVKHGDFYWLSKKYLIPSH 571
Query: 416 TPSTFAALSNE----------IWHNRLGHPGVSILNSLHRNNSILCNKFRN-------NF 458
N+ + H LGH + + N++ K + +
Sbjct: 572 ISKLTINNVNKSKSVNKYPYPLIHRMLGHANFRSIQKSLKKNAVTYLKESDIEWSNASTY 631
Query: 459 FCQSCQLGKQIK--------LPFYESLSSTLLPFDIVHSDIWTSPI--LSSGGHHYYILF 508
C C +GK K L + ES PF +H+DI+ P+ L Y+I F
Sbjct: 632 QCPDCLIGKSTKHRHVKGSRLKYQESYE----PFQYLHTDIF-GPVHHLPKSAPSYFISF 686
Query: 509 LDDFTDFLWTFPLTNKSQAH--SIFLQFCNHIKTQFERDIKCFQCDNGKEYDNSHFHQFC 566
D+ T F W +PL ++ + ++F IK QF + Q D G EY N H+F
Sbjct: 687 TDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFF 746
Query: 567 KQNGMIFRFSCPHTSPQNGKVERKIRTINNIIRTLLAHASLPPSFWHHALQMATYLLNIL 626
G+ ++ S +G ER RT+ N RTLL + LP W A++ +T + N L
Sbjct: 747 TNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSL 806
Query: 627 PTKK 630
+ K
Sbjct: 807 VSPK 810
>M240_ARATH (P93290) Hypothetical mitochondrial protein AtMg00240
(ORF111a)
Length = 111
Score = 75.9 bits (185), Expect = 7e-13
Identities = 34/79 (43%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Query: 1116 YLTFTRPDISYAVQQVCLFMHDPKTQHMTALKRIIRYIKGTSTHGLHLYPSTVD-KLTTY 1174
YLT TRPD+++AV ++ F +T M A+ +++ Y+KGT GL Y +T D +L +
Sbjct: 2 YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGL-FYSATSDLQLKAF 60
Query: 1175 TDADWGGCPDTRKSTSGYC 1193
D+DW CPDTR+S +G+C
Sbjct: 61 ADSDWASCPDTRRSVTGFC 79
>POL_SFV1 (P23074) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1161
Score = 58.2 bits (139), Expect = 2e-07
Identities = 48/176 (27%), Positives = 77/176 (43%), Gaps = 25/176 (14%)
Query: 481 LLPFDIVHSDIWTSPILSSGGHHYYILFLDDFTDFLWTFPLTNKSQAHSI-FLQFCNHIK 539
L PFD + D + P+ S G+ + ++ +D T F+W +P S + ++ L I
Sbjct: 881 LKPFDKFYID-YIGPLPPSNGYLHVLVVVDSMTGFVWLYPTKAPSTSATVKALNMLTSIA 939
Query: 540 TQFERDIKCFQCDNGKEYDNSHFHQFCKQNGMIFRFSCPHTSPQNGKVERKIRTINNIIR 599
K D G + +S F + K+ G+ FS P+ +GKVERK I ++
Sbjct: 940 IP-----KVLHSDQGAAFTSSTFADWAKEKGIQLEFSTPYHPQSSGKVERKNSDIKRLLT 994
Query: 600 TLLAHASLPPSFWHHALQMATYLLNILPTKKLALQTPTTILYQKSPSYS-HLKVFG 654
LL P+ W+ ++LP +LAL Y S Y+ H +FG
Sbjct: 995 KLLIGR---PAKWY----------DLLPVVQLALNNS----YSPSSKYTPHQLLFG 1033
>POL_SFV3L (P27401) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1157
Score = 55.1 bits (131), Expect = 1e-06
Identities = 46/174 (26%), Positives = 74/174 (42%), Gaps = 25/174 (14%)
Query: 483 PFDIVHSDIWTSPILSSGGHHYYILFLDDFTDFLWTFPLTNKSQAHSI-FLQFCNHIKTQ 541
PFD D + P+ S G+ + ++ +D T F+W +P S + ++ L I
Sbjct: 885 PFDKFFID-YIGPLPPSNGYLHVLVVVDSMTGFVWLYPTKAPSTSATVKALNMLTSIAVP 943
Query: 542 FERDIKCFQCDNGKEYDNSHFHQFCKQNGMIFRFSCPHTSPQNGKVERKIRTINNIIRTL 601
K D G + ++ F + K G+ FS P+ +GKVERK I ++ L
Sbjct: 944 -----KVIHSDQGAAFTSATFADWAKNKGIQLEFSTPYHPQSSGKVERKNSDIKRLLTKL 998
Query: 602 LAHASLPPSFWHHALQMATYLLNILPTKKLALQTPTTILYQKSPSYS-HLKVFG 654
L P+ W+ ++LP +LAL Y S Y+ H +FG
Sbjct: 999 LVGR---PAKWY----------DLLPVVQLALNNS----YSPSSKYTPHQLLFG 1035
>POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 886
Score = 54.3 bits (129), Expect = 2e-06
Identities = 40/142 (28%), Positives = 64/142 (44%), Gaps = 8/142 (5%)
Query: 483 PFDIVHSDIWTSPILSSGGHHYYILFLDDFTDFLWTFPLTNKSQAHSIFLQFCNHIKTQF 542
PFD D + P+ S G+ Y ++ +D T F W +P K+ + S ++ N + T
Sbjct: 675 PFDKFFID-YIGPLPPSQGYLYVLVVVDGMTGFTWLYP--TKAPSTSATVKSLN-VLTSI 730
Query: 543 ERDIKCFQCDNGKEYDNSHFHQFCKQNGMIFRFSCPHTSPQNGKVERKIRTINNIIRTLL 602
K D G + +S F ++ K+ G+ FS P+ KVERK I ++ LL
Sbjct: 731 AIP-KVIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKRLLTKLL 789
Query: 603 AHASLPPSFWHHALQMATYLLN 624
P+ W+ L + LN
Sbjct: 790 VGR---PTKWYDLLPVVQLALN 808
>POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC
3.1.26.4) (RT); Integrase (IN)]
Length = 1189
Score = 51.6 bits (122), Expect = 1e-05
Identities = 47/172 (27%), Positives = 71/172 (40%), Gaps = 12/172 (6%)
Query: 501 GHHYYILFLDDFTDFLWTFPLTNKSQAHSIFLQFCNHIKTQFERDIKCFQCDNGKEYDNS 560
G+ Y ++F+D F+ ++ FP T + AH + + I +F K DNG + +
Sbjct: 921 GYKYLLVFVDTFSGWVEAFP-TRQETAHIVAKKILEEIFPRFGLP-KVIGSDNGPAFVSQ 978
Query: 561 HFHQFCKQNGMIFRFSCPHTSPQNGKVERKIRTINNIIRTLLAHASLPPSFWHHALQMAT 620
+ G+ ++ C + +G+VER RTI + L L W L +A
Sbjct: 979 VSQGLARILGINWKLHCAYRPQSSGQVERMNRTIKETLTKLTLETGLKD--WRRLLSLA- 1035
Query: 621 YLLNILPTKKLALQTPTTILYQKSPSYSHLKVFGCLCFPLIPSTTRNKLQAR 672
LL T TP ILY P S L PS ++ LQAR
Sbjct: 1036 -LLRARNTPNRFGLTPYEILYGGPPPLS------TLLNSFSPSNSKTDLQAR 1080
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 51.6 bits (122), Expect = 1e-05
Identities = 53/171 (30%), Positives = 67/171 (38%), Gaps = 15/171 (8%)
Query: 460 CQSCQLGKQIKLPFYESLSSTLLP---FDIVHSDIWTSPILSSGGHHYYILFLDDFTDFL 516
CQ CQ K K ++ T P FD V D S G+ Y + + D T +L
Sbjct: 939 CQKCQKAKTTKHT-KTPMTITETPEHAFDRVVVDTIGPLPKSENGNEYAVTLICDLTKYL 997
Query: 517 WTFPLTNKSQ---AHSIFLQFCNHIKTQFERDIKCFQCDNGKEYDNSHFHQFCKQNGMIF 573
P+ NKS A +IF F +K F D G EY NS CK +
Sbjct: 998 VAIPIANKSAKTVAKAIFESFILKY-----GPMKTFITDMGTEYKNSIITDLCKYLKIKN 1052
Query: 574 RFSCPHTSPQNGKVERKIRTINNIIRTLLAHASLPPSFWHHALQMATYLLN 624
S H G VER RT+N IR ++ S + W LQ Y N
Sbjct: 1053 ITSTAHHHQTVGVVERSHRTLNEYIR---SYISTDKTDWDVWLQYFVYCFN 1100
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 50.4 bits (119), Expect = 3e-05
Identities = 54/255 (21%), Positives = 102/255 (39%), Gaps = 29/255 (11%)
Query: 413 PSTTPSTFAALSNEIWHNRLGHPGVSILNS--LHRNNSILCNKFRNNFF--CQSCQLGKQ 468
P+ T T + +L HPG+ +L + L R K + C +CQ+ K
Sbjct: 906 PNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKS 965
Query: 469 IKLPFY---ESLSSTLLPFDIVHSDIWTSPILSSGGHHYYILFLDDFTDFLWTFPLTNKS 525
Y + + + P++ + D T+ + S G++ + +D F+ P T
Sbjct: 966 RNHKPYGPLQPIPPSERPWESLSMDFITA-LPESSGYNALFVVVDRFSKMAILVPCTKSI 1024
Query: 526 QAHSIFLQFCNHIKTQFERDIKCFQCDNGKEYDNSHFHQFCKQNGMIFRFSCPHTSPQNG 585
A F + F K DN + + + F + + +FS P+ +G
Sbjct: 1025 TAEQTARMFDQRVIAYFGNP-KEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDG 1083
Query: 586 KVERKIRTINNIIR--------TLLAHASLPPSFWHHALQMATYLLNILPTKKLALQTPT 637
+ ER +T+ ++R T + H SL +++A+ AT + TP
Sbjct: 1084 QTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQM------------TPF 1131
Query: 638 TILYQKSPSYSHLKV 652
I+++ SP+ S L++
Sbjct: 1132 EIVHRYSPALSPLEL 1146
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.319 0.134 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 170,627,296
Number of Sequences: 164201
Number of extensions: 7993004
Number of successful extensions: 49279
Number of sequences better than 10.0: 756
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 471
Number of HSP's that attempted gapping in prelim test: 33400
Number of HSP's gapped (non-prelim): 7479
length of query: 1333
length of database: 59,974,054
effective HSP length: 122
effective length of query: 1211
effective length of database: 39,941,532
effective search space: 48369195252
effective search space used: 48369195252
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 72 (32.3 bits)
Medicago: description of AC146720.2