BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146719.4 - phase: 0 /pseudo
(471 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GIS2_YEAST (P53849) Zinc-finger protein GIS2 68 4e-11
CNBP_RAT (P62634) Cellular nucleic acid binding protein (CNBP) (... 66 2e-10
CNBP_HUMAN (P62633) Cellular nucleic acid binding protein (CNBP)... 66 2e-10
CNBP_MOUSE (P53996) Cellular nucleic acid binding protein (CNBP)... 64 6e-10
CNBP_CHICK (O42395) Cellular nucleic acid binding protein (CNBP) 64 6e-10
ZCH3_HUMAN (Q9NUD5) Zinc finger CCHC domain containing protein 3 62 3e-09
HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding p... 62 4e-09
GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-... 59 2e-08
BYR3_SCHPO (P36627) Cellular nucleic acid binding protein homolog 58 6e-08
YL92_SCHPO (Q9HFF2) Hypothetical protein C683.02c in chromosome I 57 1e-07
GLH4_CAEEL (O76743) ATP-dependent RNA helicase glh-4 (EC 3.6.1.-... 57 1e-07
GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-... 54 7e-07
GAG_VILV2 (P23425) Gag polyprotein [Contains: Core protein p16; ... 50 2e-05
GAG_VILV1 (P23424) Gag polyprotein [Contains: Core protein p16; ... 50 2e-05
GAG_VILV (P03352) Gag polyprotein [Contains: Core protein p16; C... 50 2e-05
GAG_VILVK (P35955) Gag polyprotein [Contains: Core protein p16; ... 48 5e-05
GAG_SIVCZ (P17282) Gag polyprotein [Contains: Core protein p18; ... 48 6e-05
GAG_CAEVC (P33458) Gag polyprotein [Contains: Core protein p16; ... 47 8e-05
GAG_SIVAI (Q02843) Gag polyprotein [Contains: Core protein p17; ... 47 1e-04
GAG_HV1U4 (P24736) Gag polyprotein [Contains: Core protein p17 (... 47 1e-04
>GIS2_YEAST (P53849) Zinc-finger protein GIS2
Length = 153
Score = 68.2 bits (165), Expect = 4e-11
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 243 PKRRDAPTEIICFKCGEKGHKSNVCDRDEK----KCFRCGQKGHTLADCKRGDVVCYNCN 298
PK+ +++ C+KCG H + C +++ KC+ CGQ GH DC+ D +CYNCN
Sbjct: 83 PKKTSRFSKVSCYKCGGPNHMAKDCMKEDGISGLKCYTCGQAGHMSRDCQN-DRLCYNCN 141
Query: 299 EEGHISSQC 307
E GHIS C
Sbjct: 142 ETGHISKDC 150
Score = 64.7 bits (156), Expect = 5e-10
Identities = 28/77 (36%), Positives = 41/77 (52%), Gaps = 6/77 (7%)
Query: 247 DAPTEIICFKCGEKGHKSNVCDRDE----KKCFRCGQKGHTLADCKRGDVVCYNCNEEGH 302
D +E +C+ C + GH C K+C+ CG+ GH ++C C+NCN+ GH
Sbjct: 18 DCDSERLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSECTVQR--CFNCNQTGH 75
Query: 303 ISSQCTQPKKVRTGGKV 319
IS +C +PKK KV
Sbjct: 76 ISRECPEPKKTSRFSKV 92
Score = 59.7 bits (143), Expect = 2e-08
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 254 CFKCGEKGHKSNVCDRDEKKCFRCGQKGHTLADCKRGDVV----CYNCNEEGHISSQCT 308
C+ CG+ GH + CD E+ C+ C + GH DC V CYNC E GH+ S+CT
Sbjct: 6 CYVCGKIGHLAEDCD-SERLCYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSECT 63
Score = 51.6 bits (122), Expect = 4e-06
Identities = 19/43 (44%), Positives = 28/43 (64%), Gaps = 1/43 (2%)
Query: 271 EKKCFRCGQKGHTLADCKRGDVVCYNCNEEGHISSQCTQPKKV 313
+K C+ CG+ GH DC + +CYNCN+ GH+ + CT P+ V
Sbjct: 3 QKACYVCGKIGHLAEDCD-SERLCYNCNKPGHVQTDCTMPRTV 44
Score = 41.2 bits (95), Expect = 0.006
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 245 RRDAPTEIICFKCGEKGHKSNVCDRDEKKCFRCGQKGHTLADCKR 289
+ D + + C+ CG+ GH S C D + C+ C + GH DC +
Sbjct: 109 KEDGISGLKCYTCGQAGHMSRDCQND-RLCYNCNETGHISKDCPK 152
>CNBP_RAT (P62634) Cellular nucleic acid binding protein (CNBP)
(Zinc finger protein 9)
Length = 177
Score = 65.9 bits (159), Expect = 2e-10
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 253 ICFKCGEKGHKSNVCDRDEKKCFRCGQKGHTLADCK----RGDVVCYNCNEEGHISSQC 307
IC++CGE GH + CD E C+ CG+ GH DCK + CYNC + GH++ C
Sbjct: 53 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 111
Score = 64.3 bits (155), Expect = 6e-10
Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 23/97 (23%)
Query: 232 KGKQRLNDERRPKRRDAPTEIICFKCGEKGHKSNVCDR-DEKKCFRCGQKGHTLADC--- 287
+G D + PKR E C+ CG+ GH + CD DE+KC+ CG+ GH DC
Sbjct: 79 RGGHIAKDCKEPKRE---REQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKV 135
Query: 288 ----------------KRGDVVCYNCNEEGHISSQCT 308
K +V CY C E GH++ +CT
Sbjct: 136 KCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 172
Score = 58.2 bits (139), Expect = 5e-08
Identities = 27/89 (30%), Positives = 35/89 (38%), Gaps = 28/89 (31%)
Query: 254 CFKCGEKGHKSNVCDRDEKK----------------------------CFRCGQKGHTLA 285
CFKCG GH + C + C+RCG+ GH
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65
Query: 286 DCKRGDVVCYNCNEEGHISSQCTQPKKVR 314
DC + CYNC GHI+ C +PK+ R
Sbjct: 66 DCDLQEDACYNCGRGGHIAKDCKEPKRER 94
>CNBP_HUMAN (P62633) Cellular nucleic acid binding protein (CNBP)
(Zinc finger protein 9)
Length = 177
Score = 65.9 bits (159), Expect = 2e-10
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 253 ICFKCGEKGHKSNVCDRDEKKCFRCGQKGHTLADCK----RGDVVCYNCNEEGHISSQC 307
IC++CGE GH + CD E C+ CG+ GH DCK + CYNC + GH++ C
Sbjct: 53 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 111
Score = 64.3 bits (155), Expect = 6e-10
Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 23/97 (23%)
Query: 232 KGKQRLNDERRPKRRDAPTEIICFKCGEKGHKSNVCDR-DEKKCFRCGQKGHTLADC--- 287
+G D + PKR E C+ CG+ GH + CD DE+KC+ CG+ GH DC
Sbjct: 79 RGGHIAKDCKEPKRE---REQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKV 135
Query: 288 ----------------KRGDVVCYNCNEEGHISSQCT 308
K +V CY C E GH++ +CT
Sbjct: 136 KCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 172
Score = 58.2 bits (139), Expect = 5e-08
Identities = 27/89 (30%), Positives = 35/89 (38%), Gaps = 28/89 (31%)
Query: 254 CFKCGEKGHKSNVCDRDEKK----------------------------CFRCGQKGHTLA 285
CFKCG GH + C + C+RCG+ GH
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65
Query: 286 DCKRGDVVCYNCNEEGHISSQCTQPKKVR 314
DC + CYNC GHI+ C +PK+ R
Sbjct: 66 DCDLQEDACYNCGRGGHIAKDCKEPKRER 94
>CNBP_MOUSE (P53996) Cellular nucleic acid binding protein (CNBP)
(Zinc finger protein 9)
Length = 178
Score = 64.3 bits (155), Expect = 6e-10
Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 23/97 (23%)
Query: 232 KGKQRLNDERRPKRRDAPTEIICFKCGEKGHKSNVCDR-DEKKCFRCGQKGHTLADC--- 287
+G D + PKR E C+ CG+ GH + CD DE+KC+ CG+ GH DC
Sbjct: 80 RGGHIAKDCKEPKRE---REQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKV 136
Query: 288 ----------------KRGDVVCYNCNEEGHISSQCT 308
K +V CY C E GH++ +CT
Sbjct: 137 KCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 173
Score = 62.8 bits (151), Expect = 2e-09
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 253 ICFKCGEKGHKSNVCD-RDEKKCFRCGQKGHTLADCK----RGDVVCYNCNEEGHISSQC 307
IC++CGE GH + CD ++++ C+ CG+ GH DCK + CYNC + GH++ C
Sbjct: 53 ICYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 112
Score = 56.6 bits (135), Expect = 1e-07
Identities = 28/90 (31%), Positives = 36/90 (39%), Gaps = 29/90 (32%)
Query: 254 CFKCGEKGHKSNVCDRDEKK----------------------------CFRCGQKGHTLA 285
CFKCG GH + C + C+RCG+ GH
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65
Query: 286 DCK-RGDVVCYNCNEEGHISSQCTQPKKVR 314
DC + D CYNC GHI+ C +PK+ R
Sbjct: 66 DCDLQEDEACYNCGRGGHIAKDCKEPKRER 95
>CNBP_CHICK (O42395) Cellular nucleic acid binding protein (CNBP)
Length = 172
Score = 64.3 bits (155), Expect = 6e-10
Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 23/97 (23%)
Query: 232 KGKQRLNDERRPKRRDAPTEIICFKCGEKGHKSNVCDR-DEKKCFRCGQKGHTLADC--- 287
+G D + PKR E C+ CG+ GH + CD DE+KC+ CG+ GH DC
Sbjct: 74 RGGHIAKDCKEPKRE---REQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKV 130
Query: 288 ----------------KRGDVVCYNCNEEGHISSQCT 308
K +V CY C E GH++ +CT
Sbjct: 131 KCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 167
Score = 62.4 bits (150), Expect = 2e-09
Identities = 34/113 (30%), Positives = 48/113 (42%), Gaps = 31/113 (27%)
Query: 253 ICFKCGEKGHKSNVCD-RDEKKCFRCGQKGHTLADCKR---------------------- 289
IC++CGE GH + CD +++K C+ CG+ GH DCK
Sbjct: 47 ICYRCGESGHLAKDCDLQEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 106
Query: 290 ---GDVVCYNCNEEGHISSQCTQPKKVRTGGKVFALTGTQTVNEDRLIRGTCF 339
+ CY+C E GHI CT+ K R G TG +N + C+
Sbjct: 107 DHADEQKCYSCGEFGHIQKDCTKVKCYRCGE-----TGHVAINCSKTSEVNCY 154
Score = 58.2 bits (139), Expect = 5e-08
Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 23/84 (27%)
Query: 254 CFKCGEKGHKSNVCDRDEKK----------------------CFRCGQKGHTLADCK-RG 290
CFKCG GH + C + C+RCG+ GH DC +
Sbjct: 6 CFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDLQE 65
Query: 291 DVVCYNCNEEGHISSQCTQPKKVR 314
D CYNC GHI+ C +PK+ R
Sbjct: 66 DKACYNCGRGGHIAKDCKEPKRER 89
>ZCH3_HUMAN (Q9NUD5) Zinc finger CCHC domain containing protein 3
Length = 404
Score = 62.0 bits (149), Expect = 3e-09
Identities = 28/60 (46%), Positives = 38/60 (62%), Gaps = 5/60 (8%)
Query: 254 CFKCGEKGHKSNVCDRDEKKCFRCGQKGHTLADCKRGDVVCYNCNEEGHISSQCTQPKKV 313
CFKCG + H S C +D +CFRCG++GH C++G +VC C + GH +QC PK V
Sbjct: 336 CFKCGSRTHMSGSCTQD--RCFRCGEEGHLSPYCRKG-IVCNLCGKRGHAFAQC--PKAV 390
Score = 41.6 bits (96), Expect = 0.004
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 250 TEIICFKCGEKGHKSNVCDRDEKKCFRCGQKGHTLADCKR 289
T+ CF+CGE+GH S C R C CG++GH A C +
Sbjct: 350 TQDRCFRCGEEGHLSPYC-RKGIVCNLCGKRGHAFAQCPK 388
Score = 40.0 bits (92), Expect = 0.013
Identities = 15/36 (41%), Positives = 20/36 (54%), Gaps = 2/36 (5%)
Query: 272 KKCFRCGQKGHTLADCKRGDVVCYNCNEEGHISSQC 307
K CF+CG + H C + C+ C EEGH+S C
Sbjct: 334 KTCFKCGSRTHMSGSCTQDR--CFRCGEEGHLSPYC 367
>HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding
protein)
Length = 271
Score = 61.6 bits (148), Expect = 4e-09
Identities = 28/78 (35%), Positives = 36/78 (45%), Gaps = 14/78 (17%)
Query: 254 CFKCGEKGHKSNVCDRDEKK-------CFRCGQKGHTLADCKRG-------DVVCYNCNE 299
CF+CGE+GH S C + + CFRCG+ GH DC CY C +
Sbjct: 45 CFRCGEEGHMSRECPNEARSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQ 104
Query: 300 EGHISSQCTQPKKVRTGG 317
EGH+S C + GG
Sbjct: 105 EGHLSRDCPSSQGGSRGG 122
Score = 59.3 bits (142), Expect = 2e-08
Identities = 25/70 (35%), Positives = 36/70 (50%), Gaps = 14/70 (20%)
Query: 254 CFKCGEKGHKSNVCDRDE--------KKCFRCGQKGHTLADCKR------GDVVCYNCNE 299
C+KCG+ GH S C + +KC++CG+ GH +C GD CY C +
Sbjct: 170 CYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPSAGSTGSGDRACYKCGK 229
Query: 300 EGHISSQCTQ 309
GHIS +C +
Sbjct: 230 PGHISRECPE 239
Score = 58.2 bits (139), Expect = 5e-08
Identities = 26/71 (36%), Positives = 33/71 (45%), Gaps = 17/71 (23%)
Query: 254 CFKCGEKGHKSNVCDR------DEKKCFRCGQKGHTLADCKR-----------GDVVCYN 296
C+KCGE GH S C ++ C++CG+ GH +C GD CY
Sbjct: 198 CYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISRECPEAGGSYGGSRGGGDRTCYK 257
Query: 297 CNEEGHISSQC 307
C E GHIS C
Sbjct: 258 CGEAGHISRDC 268
Score = 57.8 bits (138), Expect = 6e-08
Identities = 33/118 (27%), Positives = 47/118 (38%), Gaps = 16/118 (13%)
Query: 217 KGQ*SRPKPYSAPTDKGKQRLNDERRPKRRDAPTEIICFKCGEKGHKSNVCDRDE----- 271
+G SR P S +G R + + C+KCG+ GH S C +
Sbjct: 105 EGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNGQGGYSG 164
Query: 272 ---KKCFRCGQKGHTLADCKRG--------DVVCYNCNEEGHISSQCTQPKKVRTGGK 318
+ C++CG GH DC G D CY C E GH+S +C +G +
Sbjct: 165 AGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRKCYKCGESGHMSRECPSAGSTGSGDR 222
Score = 57.8 bits (138), Expect = 6e-08
Identities = 32/93 (34%), Positives = 39/93 (41%), Gaps = 30/93 (32%)
Query: 245 RRDAPTEIICFKCGEKGHKSNVCDRDEK-------KCFRCGQKGHTLADC---------- 287
R A + CF+CGE GH S C K +C++CGQ+GH DC
Sbjct: 63 RSGAAGAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGG 122
Query: 288 ---KR----------GDVVCYNCNEEGHISSQC 307
KR GD CY C + GHIS C
Sbjct: 123 YGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDC 155
Score = 56.2 bits (134), Expect = 2e-07
Identities = 27/88 (30%), Positives = 41/88 (45%), Gaps = 17/88 (19%)
Query: 239 DERRPKRRDAPTEIICFKCGEKGHKSNVCDRDEKK-------CFRCGQKGHTLADCKR-- 289
D +RP+ + + C CG++GH + C + K CFRCG++GH +C
Sbjct: 6 DVKRPRTESSTS---CRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEA 62
Query: 290 -----GDVVCYNCNEEGHISSQCTQPKK 312
G + C+ C E GH+S C K
Sbjct: 63 RSGAAGAMTCFRCGEAGHMSRDCPNSAK 90
>GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-)
(Germline helicase-2)
Length = 974
Score = 59.3 bits (142), Expect = 2e-08
Identities = 36/135 (26%), Positives = 49/135 (35%), Gaps = 39/135 (28%)
Query: 236 RLNDERRPKRRDAPTEIICFKCGEKGHKSNVCDRDEK----------------------- 272
R ND PK+ P +C+ C + GH S C + K
Sbjct: 382 RSNDCPEPKKEREPR--VCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGNDGGFGGG 439
Query: 273 --------------KCFRCGQKGHTLADCKRGDVVCYNCNEEGHISSQCTQPKKVRTGGK 318
KCF C +GH A+C C+NC E+GH S++C P K R G +
Sbjct: 440 NAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNECPNPAKPREGAE 499
Query: 319 VFALTGTQTVNEDRL 333
T ED +
Sbjct: 500 GEGPKATYVPVEDNM 514
Score = 52.4 bits (124), Expect = 3e-06
Identities = 27/101 (26%), Positives = 40/101 (38%), Gaps = 42/101 (41%)
Query: 254 CFKCGEKGHKSNVC-----DRDEKKCFRCGQKGHTLADC--------------------- 287
CF C + GH+SN C +R+ + C+ C Q GH DC
Sbjct: 373 CFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGFTSGFGGGN 432
Query: 288 ----------------KRGDVVCYNCNEEGHISSQCTQPKK 312
+RG + C+NC EGH S++C +P +
Sbjct: 433 DGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPR 473
Score = 48.1 bits (113), Expect = 5e-05
Identities = 25/60 (41%), Positives = 30/60 (49%), Gaps = 7/60 (11%)
Query: 268 DRDEKK--CFRCGQKGHTLADC-----KRGDVVCYNCNEEGHISSQCTQPKKVRTGGKVF 320
DR E+ CF C Q GH DC +R VCYNC + GH S C + +K R G F
Sbjct: 251 DRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGF 310
Score = 48.1 bits (113), Expect = 5e-05
Identities = 25/60 (41%), Positives = 30/60 (49%), Gaps = 7/60 (11%)
Query: 268 DRDEKK--CFRCGQKGHTLADC-----KRGDVVCYNCNEEGHISSQCTQPKKVRTGGKVF 320
DR E+ CF C Q GH DC +R VCYNC + GH S C + +K R G F
Sbjct: 365 DRGERNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGF 424
Score = 31.6 bits (70), Expect = 4.6
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 236 RLNDERRPKRRDAPTEIICFKCGEKGHKSNVCDRDEKKCFRCGQKGHT 283
R ND PK+ P +C+ C + GH S C + K R G+ G T
Sbjct: 268 RSNDCPEPKKEREPR--VCYNCQQPGHNSRDCPEERKP--REGRNGFT 311
>BYR3_SCHPO (P36627) Cellular nucleic acid binding protein homolog
Length = 179
Score = 57.8 bits (138), Expect = 6e-08
Identities = 20/47 (42%), Positives = 33/47 (69%), Gaps = 1/47 (2%)
Query: 269 RDEKKCFRCGQKGHTLADCKRGDVVCYNCNEEGHISSQCTQPKKVRT 315
R +C+ CG+ GH +C +G + CYNCN+ GH +S+CT+P++ +T
Sbjct: 14 RPGPRCYNCGENGHQARECTKGSI-CYNCNQTGHKASECTEPQQEKT 59
Score = 57.4 bits (137), Expect = 8e-08
Identities = 26/75 (34%), Positives = 36/75 (47%), Gaps = 7/75 (9%)
Query: 240 ERRPKRRDAPTEIICFKCGEKGHKSNVCD--RDEKKCFRCGQKGHTLADC-----KRGDV 292
E + R+ IC+ C + GHK++ C + EK C+ CG GH + DC R
Sbjct: 24 ENGHQARECTKGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGA 83
Query: 293 VCYNCNEEGHISSQC 307
CY C GHI+ C
Sbjct: 84 ECYKCGRVGHIARDC 98
Score = 57.0 bits (136), Expect = 1e-07
Identities = 23/59 (38%), Positives = 34/59 (56%), Gaps = 3/59 (5%)
Query: 254 CFKCGEKGHKSNVCDRDEKKCFRCGQKGHTLADCKRGD--VVCYNCNEEGHISSQCTQP 310
C+ CG GH++ C K C+ CG+ GH +C++ +CY CN+ GHI+ CT P
Sbjct: 118 CYACGSYGHQARDCTMGVK-CYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNCTSP 175
Score = 52.8 bits (125), Expect = 2e-06
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 254 CFKCGEKGHKSNVCDRDEKKCFRCGQKGHTLADC--KRGDVVCYNCNEEGHISSQCTQPK 311
C+ CGE GH++ C + C+ C Q GH ++C + + CY C GH+ C
Sbjct: 19 CYNCGENGHQARECTKG-SICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSP 77
Query: 312 KVRTGGKVF 320
R G + +
Sbjct: 78 NPRQGAECY 86
Score = 50.4 bits (119), Expect = 1e-05
Identities = 26/87 (29%), Positives = 37/87 (41%), Gaps = 18/87 (20%)
Query: 251 EIICFKCGEKGHKSNVCD-----RDEKKCFRCGQKGHTLADCK-------------RGDV 292
E C+ CG GH C R +C++CG+ GH DC+ R ++
Sbjct: 57 EKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNM 116
Query: 293 VCYNCNEEGHISSQCTQPKKVRTGGKV 319
CY C GH + CT K + GK+
Sbjct: 117 NCYACGSYGHQARDCTMGVKCYSCGKI 143
Score = 41.6 bits (96), Expect = 0.004
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 246 RDAPTEIICFKCGEKGHKSNVCDR--DEKKCFRCGQKGHTLADC 287
RD + C+ CG+ GH+S C + D + C++C Q GH +C
Sbjct: 129 RDCTMGVKCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
>YL92_SCHPO (Q9HFF2) Hypothetical protein C683.02c in chromosome I
Length = 218
Score = 56.6 bits (135), Expect = 1e-07
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 17/97 (17%)
Query: 233 GKQRLNDERRPKRRDAPTEI----------ICFKCGEKGHKSNVCDRDEKK---CFRCGQ 279
G + DER+ K+R + CF C ++GH C + CFRCG
Sbjct: 48 GSSKRYDERQKKKRSEYRRLRRINQRNRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGS 107
Query: 280 KGHTLADC-KRGDVV---CYNCNEEGHISSQCTQPKK 312
K H+L C K+G + C+ C+E GH+S QC Q K
Sbjct: 108 KEHSLNACSKKGPLKFAKCFICHENGHLSGQCEQNPK 144
Score = 34.7 bits (78), Expect = 0.54
Identities = 22/79 (27%), Positives = 31/79 (38%), Gaps = 14/79 (17%)
Query: 254 CFKCGEKGHKSNVCDRDEKKCFRCGQKGHTLADCKRGDVVCYNCNEEGHISSQCTQPKKV 313
CF C E GH S C+++ K + G C C+ H++ C Q K
Sbjct: 126 CFICHENGHLSGQCEQNPKGLYPKGG-------------CCKFCSSVHHLAKDCDQVNKD 172
Query: 314 RTG-GKVFALTGTQTVNED 331
G V + GT +ED
Sbjct: 173 DVSFGHVVGVAGTTGADED 191
>GLH4_CAEEL (O76743) ATP-dependent RNA helicase glh-4 (EC 3.6.1.-)
(Germline helicase-4)
Length = 1156
Score = 56.6 bits (135), Expect = 1e-07
Identities = 32/95 (33%), Positives = 43/95 (44%), Gaps = 14/95 (14%)
Query: 226 YSAPTDKGKQRLNDERRPKRRDAPTEIICFKCGEKGHKSNVCDRDEK---KCFRCGQKGH 282
+ P+D + + RP+ C CGE+GH S CD+ + C C Q GH
Sbjct: 552 FGEPSDNQRGNWDGGERPRG--------CHNCGEEGHISKECDKPKVPRFPCRNCEQLGH 603
Query: 283 TLADCKRGDV---VCYNCNEEGHISSQCTQPKKVR 314
+DC + V C NC EGH + C QPK R
Sbjct: 604 FASDCDQPRVPRGPCRNCGIEGHFAVDCDQPKVPR 638
Score = 46.6 bits (109), Expect = 1e-04
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 254 CFKCGEKGHKSNVCDRDEKK---CFRCGQKGHTLADCKRGDV------VCYNCNEEGHIS 304
C CG +GH + CD+ + C CGQ+GH DC+ V C C EEGH
Sbjct: 618 CRNCGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDCQNERVRMEPTEPCRRCAEEGHWG 677
Query: 305 SQC-TQPKKVR 314
+C T+PK ++
Sbjct: 678 YECPTRPKDLQ 688
Score = 36.6 bits (83), Expect = 0.14
Identities = 18/47 (38%), Positives = 25/47 (52%), Gaps = 2/47 (4%)
Query: 294 CYNCNEEGHISSQCTQPKKVRTGGKVFALTG--TQTVNEDRLIRGTC 338
C+NC EEGHIS +C +PK R + G ++ R+ RG C
Sbjct: 572 CHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQPRVPRGPC 618
>GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-)
(Germline helicase-1)
Length = 763
Score = 54.3 bits (129), Expect = 7e-07
Identities = 31/120 (25%), Positives = 44/120 (35%), Gaps = 41/120 (34%)
Query: 236 RLNDERRPKRRDAPTEIICFKCGEKGHKSNVCDRDEK----------------------- 272
R +D P++ P +C+ C + GH S C + K
Sbjct: 169 RSSDCPEPRKEREPR--VCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFGNNGGNDG 226
Query: 273 ----------------KCFRCGQKGHTLADCKRGDVVCYNCNEEGHISSQCTQPKKVRTG 316
KCF C +GH A+C C+NC E+GH S++C P K R G
Sbjct: 227 FGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPRGCFNCGEQGHRSNECPNPAKPREG 286
Score = 53.5 bits (127), Expect = 1e-06
Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 11/68 (16%)
Query: 258 GEKGHKSNVCDRDEKKCFRCGQKGHTLADC-----KRGDVVCYNCNEEGHISSQCTQ--- 309
GE GH CF C Q GH +DC +R VCYNC + GH S +CT+
Sbjct: 147 GEGGHGGG---ERNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERK 203
Query: 310 PKKVRTGG 317
P++ RTGG
Sbjct: 204 PREGRTGG 211
Score = 50.1 bits (118), Expect = 1e-05
Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 44/103 (42%)
Query: 254 CFKCGEKGHKSNVC-----DRDEKKCFRCGQKGHTLADC--------------------- 287
CF C + GH+S+ C +R+ + C+ C Q GHT +C
Sbjct: 160 CFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERKPREGRTGGFGGGAGFG 219
Query: 288 ------------------KRGDVVCYNCNEEGHISSQCTQPKK 312
+RG + C+NC EGH S++C +P +
Sbjct: 220 NNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPR 262
>GAG_VILV2 (P23425) Gag polyprotein [Contains: Core protein p16;
Core protein p25; Core protein p14]
Length = 442
Score = 49.7 bits (117), Expect = 2e-05
Identities = 19/55 (34%), Positives = 32/55 (57%), Gaps = 6/55 (10%)
Query: 258 GEKGHKSNVCDRDEKKCFRCGQKGHTLADCKRGDVVCYNCNEEGHISSQCTQPKK 312
G+ GHK +KC+ CG+ GH C++G ++C++C + GH+ C Q K+
Sbjct: 376 GKAGHKGV-----NQKCYNCGKPGHLARQCRQG-IICHHCGKRGHMQKDCRQKKQ 424
Score = 30.8 bits (68), Expect = 7.9
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 254 CFKCGEKGHKSNVCDRDEKKCFRCGQKGHTLADCKRGDVVCYNCNEEGHISSQCTQ 309
C G +G K + + + + G KG CYNC + GH++ QC Q
Sbjct: 355 CRDVGSEGFKMQLLAQALRPQGKAGHKGVNQK--------CYNCGKPGHLARQCRQ 402
>GAG_VILV1 (P23424) Gag polyprotein [Contains: Core protein p16;
Core protein p25; Core protein p14]
Length = 442
Score = 49.7 bits (117), Expect = 2e-05
Identities = 19/55 (34%), Positives = 32/55 (57%), Gaps = 6/55 (10%)
Query: 258 GEKGHKSNVCDRDEKKCFRCGQKGHTLADCKRGDVVCYNCNEEGHISSQCTQPKK 312
G+ GHK +KC+ CG+ GH C++G ++C++C + GH+ C Q K+
Sbjct: 376 GKAGHKGV-----NQKCYNCGKPGHLARQCRQG-IICHHCGKRGHMQKDCRQKKQ 424
Score = 30.8 bits (68), Expect = 7.9
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 254 CFKCGEKGHKSNVCDRDEKKCFRCGQKGHTLADCKRGDVVCYNCNEEGHISSQCTQ 309
C G +G K + + + + G KG CYNC + GH++ QC Q
Sbjct: 355 CRDVGSEGFKMQLLAQALRPQGKAGHKGVNQK--------CYNCGKPGHLARQCRQ 402
>GAG_VILV (P03352) Gag polyprotein [Contains: Core protein p16; Core
protein p25; Core protein p14]
Length = 442
Score = 49.7 bits (117), Expect = 2e-05
Identities = 19/55 (34%), Positives = 32/55 (57%), Gaps = 6/55 (10%)
Query: 258 GEKGHKSNVCDRDEKKCFRCGQKGHTLADCKRGDVVCYNCNEEGHISSQCTQPKK 312
G+ GHK +KC+ CG+ GH C++G ++C++C + GH+ C Q K+
Sbjct: 376 GKAGHKGV-----NQKCYNCGKPGHLARQCRQG-IICHHCGKRGHMQKDCRQKKQ 424
Score = 30.8 bits (68), Expect = 7.9
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 254 CFKCGEKGHKSNVCDRDEKKCFRCGQKGHTLADCKRGDVVCYNCNEEGHISSQCTQ 309
C G +G K + + + + G KG CYNC + GH++ QC Q
Sbjct: 355 CRDVGSEGFKMQLLAQALRPQGKAGHKGVNQK--------CYNCGKPGHLARQCRQ 402
>GAG_VILVK (P35955) Gag polyprotein [Contains: Core protein p16;
Core protein p25; Core protein p14]
Length = 442
Score = 48.1 bits (113), Expect = 5e-05
Identities = 19/57 (33%), Positives = 32/57 (55%), Gaps = 9/57 (15%)
Query: 256 KCGEKGHKSNVCDRDEKKCFRCGQKGHTLADCKRGDVVCYNCNEEGHISSQCTQPKK 312
K G+KG +KC+ CG+ GH C++G ++C++C + GH+ C Q K+
Sbjct: 377 KAGQKGVN--------QKCYNCGKPGHLARQCRQG-IICHHCGKRGHMQKDCRQKKQ 424
Score = 32.7 bits (73), Expect = 2.1
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 254 CFKCGEKGHKSNVCDRDEKKCFRCGQKGHTLADCKRGDVVCYNCNEEGHISSQCTQ 309
C G +G K + + + + GQKG CYNC + GH++ QC Q
Sbjct: 355 CRDVGSEGFKMQLLAQALRPQGKAGQKGVNQK--------CYNCGKPGHLARQCRQ 402
>GAG_SIVCZ (P17282) Gag polyprotein [Contains: Core protein p18;
Core protein p25; Core protein p16]
Length = 508
Score = 47.8 bits (112), Expect = 6e-05
Identities = 21/46 (45%), Positives = 29/46 (62%), Gaps = 6/46 (13%)
Query: 243 PKRRDAPTEIICFKCGEKGHKSNVCDRDEKK-CFRCGQKGHTLADC 287
PKR+ I CF CG++GH + C +K C+RCGQ+GH + DC
Sbjct: 396 PKRK-----IKCFNCGKEGHLARNCKAPRRKGCWRCGQEGHQMKDC 436
Score = 40.4 bits (93), Expect = 0.010
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 7/40 (17%)
Query: 273 KCFRCGQKGHTLADCK----RGDVVCYNCNEEGHISSQCT 308
KCF CG++GH +CK +G C+ C +EGH CT
Sbjct: 401 KCFNCGKEGHLARNCKAPRRKG---CWRCGQEGHQMKDCT 437
Score = 30.8 bits (68), Expect = 7.9
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 292 VVCYNCNEEGHISSQCTQPKK 312
+ C+NC +EGH++ C P++
Sbjct: 400 IKCFNCGKEGHLARNCKAPRR 420
>GAG_CAEVC (P33458) Gag polyprotein [Contains: Core protein p16;
Core protein p25; Core protein p14]
Length = 441
Score = 47.4 bits (111), Expect = 8e-05
Identities = 14/43 (32%), Positives = 28/43 (64%), Gaps = 1/43 (2%)
Query: 272 KKCFRCGQKGHTLADCKRGDVVCYNCNEEGHISSQCTQPKKVR 314
++C+ CG+ GH C++G ++C+NC + GH+ +C + +R
Sbjct: 379 QRCYNCGKPGHQARQCRQG-IICHNCGKRGHMQKECRGKRDIR 420
>GAG_SIVAI (Q02843) Gag polyprotein [Contains: Core protein p17;
Core protein p24; Core protein p15]
Length = 513
Score = 47.0 bits (110), Expect = 1e-04
Identities = 19/49 (38%), Positives = 27/49 (54%), Gaps = 1/49 (2%)
Query: 243 PKRRDAPTEIICFKCGEKGHKSNVCDRDEK-KCFRCGQKGHTLADCKRG 290
P+++ + CF CG+ GH C + KCF+CG+ GH DCK G
Sbjct: 381 PQKKGPRGPLKCFNCGKFGHMQRECKAPRQIKCFKCGKIGHMAKDCKNG 429
Score = 39.3 bits (90), Expect = 0.022
Identities = 15/40 (37%), Positives = 22/40 (54%), Gaps = 1/40 (2%)
Query: 269 RDEKKCFRCGQKGHTLADCKRG-DVVCYNCNEEGHISSQC 307
R KCF CG+ GH +CK + C+ C + GH++ C
Sbjct: 387 RGPLKCFNCGKFGHMQRECKAPRQIKCFKCGKIGHMAKDC 426
Score = 32.3 bits (72), Expect = 2.7
Identities = 9/26 (34%), Positives = 18/26 (68%)
Query: 289 RGDVVCYNCNEEGHISSQCTQPKKVR 314
RG + C+NC + GH+ +C P++++
Sbjct: 387 RGPLKCFNCGKFGHMQRECKAPRQIK 412
Score = 30.8 bits (68), Expect = 7.9
Identities = 13/34 (38%), Positives = 17/34 (49%)
Query: 248 APTEIICFKCGEKGHKSNVCDRDEKKCFRCGQKG 281
AP +I CFKCG+ GH + C + G G
Sbjct: 407 APRQIKCFKCGKIGHMAKDCKNGQANFLGYGHWG 440
>GAG_HV1U4 (P24736) Gag polyprotein [Contains: Core protein p17
(Matrix protein); Core protein p24 (Core antigen); Core
protein p2; Core protein p7 (Nucleocapsid protein); Core
protein p1; Core protein p6]
Length = 492
Score = 47.0 bits (110), Expect = 1e-04
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 249 PTEIICFKCGEKGHKSNVCDRDEKK-CFRCGQKGHTLADC 287
P I CF CG++GH + C KK C++CG++GH + DC
Sbjct: 380 PRRIKCFNCGKEGHLAKNCRAPRKKGCWKCGKEGHQMKDC 419
Score = 40.8 bits (94), Expect = 0.008
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 7/41 (17%)
Query: 273 KCFRCGQKGHTLADC----KRGDVVCYNCNEEGHISSQCTQ 309
KCF CG++GH +C K+G C+ C +EGH CT+
Sbjct: 384 KCFNCGKEGHLAKNCRAPRKKG---CWKCGKEGHQMKDCTE 421
Score = 33.5 bits (75), Expect = 1.2
Identities = 19/65 (29%), Positives = 28/65 (42%), Gaps = 12/65 (18%)
Query: 254 CFKCGEKGHKSNVCDRDEKKCFRCGQKGHTLADCKRGD------VVCYNCNEEGHISSQC 307
C G GHK+ V Q T +RG+ + C+NC +EGH++ C
Sbjct: 345 CQGVGGPGHKARVLAE------AMSQVQQTSIMMQRGNFRGPRRIKCFNCGKEGHLAKNC 398
Query: 308 TQPKK 312
P+K
Sbjct: 399 RAPRK 403
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.323 0.137 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,535,177
Number of Sequences: 164201
Number of extensions: 2543833
Number of successful extensions: 6400
Number of sequences better than 10.0: 121
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 5799
Number of HSP's gapped (non-prelim): 374
length of query: 471
length of database: 59,974,054
effective HSP length: 114
effective length of query: 357
effective length of database: 41,255,140
effective search space: 14728084980
effective search space used: 14728084980
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)
Medicago: description of AC146719.4