BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146711.3 - phase: 0 
         (61 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810...    47  7e-06
COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contain...    45  3e-05
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran...    42  3e-04

>M810_ARATH (P92519) Hypothetical mitochondrial protein AtMg00810
           (ORF240b)
          Length = 240

 Score = 47.4 bits (111), Expect = 7e-06
 Identities = 21/49 (42%), Positives = 32/49 (64%)

Query: 12  DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESAA 60
           D+D+AG    R+ST+G C FL   +  WS ++Q T++ S+TE EY + A
Sbjct: 169 DSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALA 217


>COPI_DROME (P04146) Copia protein (Gag-int-pol protein) [Contains:
            Copia VLP protein; Copia protease (EC 3.4.23.-)]
          Length = 1409

 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 21/47 (44%), Positives = 35/47 (73%), Gaps = 1/47 (2%)

Query: 11   LDADYAGDKIERKSTSGSC-QFLEQALTGWSCRKQNTIALSTTEAEY 56
            +D+D+AG +I+RKST+G   +  +  L  W+ ++QN++A S+TEAEY
Sbjct: 1252 VDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEY 1298


>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
            transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
            Reverse transcriptase (EC 2.7.7.49); Endonuclease]
          Length = 1328

 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 22/48 (45%), Positives = 27/48 (55%)

Query: 12   DADYAGDKIERKSTSGSCQFLEQALTGWSCRKQNTIALSTTEAEYESA 59
            DAD AGD   RKS++G           W  + Q  +ALSTTEAEY +A
Sbjct: 1180 DADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAA 1227


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.332    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,557,014
Number of Sequences: 164201
Number of extensions: 135314
Number of successful extensions: 443
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 439
Number of HSP's gapped (non-prelim): 3
length of query: 61
length of database: 59,974,054
effective HSP length: 37
effective length of query: 24
effective length of database: 53,898,617
effective search space: 1293566808
effective search space used: 1293566808
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 58 (26.9 bits)