BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146708.4 + phase: 0 
         (298 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

PRPR_SALTY (P74839) Propionate catabolism operon regulatory protein    33  1.1
DRA_RAT (Q924C9) Chloride anion exchanger (DRA protein) (Down-re...    32  2.5
KUP1_LACJO (Q74LN3) Probable potassium transport system protein ...    31  3.3
YBIO_ECOLI (P75783) Hypothetical UPF0003 protein ybiO                  30  7.2
NARB_SYNY3 (P73448) Nitrate reductase (EC 1.7.99.4)                    30  7.2

>PRPR_SALTY (P74839) Propionate catabolism operon regulatory protein
          Length = 541

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 31/105 (29%), Positives = 43/105 (40%), Gaps = 14/105 (13%)

Query: 94  RVHAFIGLSGAVSTGKCIAADAAILDAFRIPPHRRSMREIVSVCWKPPSAPWVKVNTDGS 153
           R  A + + G   TGK +AA A     F   PHR++           PS P+V VN    
Sbjct: 240 RSRAAVLIQGETGTGKELAAQAIHQTFFHRQPHRQN----------KPSPPFVAVNC--G 287

Query: 154 VLNNSGACGGLFRDHLGTFLGAFVGNLGRCSVFDTEVSGFILVME 198
            +  S     LF    G F G+  G  GR  +F+    G + + E
Sbjct: 288 AITESLLEAELFGYEEGAFTGSRRG--GRAGLFEIAHGGTLFLDE 330


>DRA_RAT (Q924C9) Chloride anion exchanger (DRA protein)
           (Down-regulated in adenoma)
          Length = 757

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 18/44 (40%), Positives = 24/44 (53%), Gaps = 6/44 (13%)

Query: 176 FVGNLGRCSVFDTEV--SGFILVMEHAALHGWYNIWLESDASSA 217
           F+  L RC  FD EV  S F L +  A LH    IW++ D S++
Sbjct: 683 FIDKLARCEFFDDEVTDSIFFLTIHDAILH----IWMKKDYSTS 722


>KUP1_LACJO (Q74LN3) Probable potassium transport system protein
           kup1
          Length = 683

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 16  FLRCKFVVTLWSWLCSQLHVGLDFSSIKALMSSLPRHCSSQVRDLYVAAVVHMVHSIWWA 75
           +L  K V T+W+WL     +   F  +  +++SL +        L +A  + ++  +W+ 
Sbjct: 393 WLAMKGVHTIWNWL---FLIFFGFLDVMFMLASLSKFMHGGYVSLVIAGFIGIIMYVWYY 449

Query: 76  RNNVRFSSAKVSSHAVQVRVHAFIGL 101
            N +R    K  S    VR+  ++ +
Sbjct: 450 GNKIR---DKRESRNAYVRLDEYVDM 472


>YBIO_ECOLI (P75783) Hypothetical UPF0003 protein ybiO
          Length = 741

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 7/107 (6%)

Query: 15  LFLRCKFVVTLWSWLCSQLHVGLDFSSIKALMSSLPRHCSSQVRDLY---VAAVVHMVHS 71
           LF+R   +V  W WL S   + L F S+    +SL     + VR L    +AA V  + S
Sbjct: 338 LFIRAFALV--WHWLASAYFIVLFFFSLFDPGNSLKFMMGATVRSLAIIGIAAFVSGMFS 395

Query: 72  IWWARNNVRFSSAKVSSHAVQVRVHAFIGLSGAVSTGKCIAADAAIL 118
            W A+        + +   +Q R++ +  LS A+ T + +    A++
Sbjct: 396 RWLAKTITLSPHTQRNYPELQKRLNGW--LSAALKTARILTVCVAVM 440


>NARB_SYNY3 (P73448) Nitrate reductase (EC 1.7.99.4)
          Length = 714

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 14/36 (38%), Positives = 21/36 (57%)

Query: 1   MCSFCLEQVETSDHLFLRCKFVVTLWSWLCSQLHVG 36
           +C   LEQ+ET+ H +   K V++LWS   +Q   G
Sbjct: 280 ICGISLEQLETAAHYWGNAKTVLSLWSMGMNQSFQG 315


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.326    0.137    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,406,965
Number of Sequences: 164201
Number of extensions: 1337880
Number of successful extensions: 3605
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3604
Number of HSP's gapped (non-prelim): 5
length of query: 298
length of database: 59,974,054
effective HSP length: 109
effective length of query: 189
effective length of database: 42,076,145
effective search space: 7952391405
effective search space used: 7952391405
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 65 (29.6 bits)