BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146708.15 - phase: 2
(392 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1 related protein) 205 1e-52
TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1 related protein) 199 1e-50
TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1) 194 3e-49
TIA1_HUMAN (P31483) Nucleolysin TIA-1 (RNA-binding protein TIA-1... 192 2e-48
PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-b... 150 5e-36
YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c i... 117 7e-26
CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1 108 2e-23
PAB4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-bin... 101 4e-21
PAB2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-bin... 98 4e-20
S3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome as... 97 9e-20
NAM8_YEAST (Q00539) NAM8 protein 95 4e-19
PAB1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-bindi... 94 5e-19
PAB1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-bin... 94 5e-19
PAB1_XENLA (P20965) Polyadenylate-binding protein 1 (Poly(A)-bin... 94 6e-19
PAB1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-bin... 94 8e-19
PAB1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-bin... 94 8e-19
PAB3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-bin... 91 5e-18
YP85_CAEEL (Q09442) Hypothetical RNA-binding protein C08B11.5 in... 90 1e-17
PAB5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-bin... 88 3e-17
SP49_SCHPO (O14102) Spliceosome-associated protein 49 82 2e-15
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1 related protein)
Length = 375
Score = 205 bits (522), Expect = 1e-52
Identities = 112/282 (39%), Positives = 172/282 (60%), Gaps = 19/282 (6%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSS--YGFIHYFDRRSAALAILTLNGR 87
YVGN+ VTE L+ ++F+ GP + CK+ + S+ Y F+ +++ R AA A+ +NGR
Sbjct: 12 YVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGR 71
Query: 88 HLFGQPIKVNWAYA-SGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYQSCSDARVMWD 146
+ G+ +KVNWA S Q++DTS H+++FVGDLSPE+T + + F+ + SDARV+ D
Sbjct: 72 KILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKD 131
Query: 147 QKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSDSKSV 206
TG+S+G+GFVSF ++ DA++AI + G+WLG RQIR NWAT+ + Q +++K +
Sbjct: 132 MATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQL 191
Query: 207 VELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEEVRV 266
ED V +++P+ TVY G + S T + + F G I E+RV
Sbjct: 192 ------RFED-------VVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRV 236
Query: 267 QRDKGFGFVRYSTHAEAALAIQMGNAQSYLCGKIIKCSWGSK 308
+KG+ FVR+STH AA AI N + + G ++KC WG +
Sbjct: 237 FPEKGYSFVRFSTHESAAHAIVSVNGTT-IEGHVVKCYWGKE 277
Score = 58.5 bits (140), Expect = 3e-08
Identities = 41/196 (20%), Positives = 84/196 (41%), Gaps = 29/196 (14%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRK----EKSSYGFIHYFDRRSAALAILTLN 85
+VG++ ++T ++ FA G + ++ + + YGF+ ++++ A AI+ +
Sbjct: 100 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 159
Query: 86 GRHLFGQPIKVNWAYA------SGQREDTSG-------------HYNIFVGDLSPEVTDA 126
G+ L G+ I+ NWA S Q +T + ++ G ++ +TD
Sbjct: 160 GQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQ 219
Query: 127 TLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCN 186
+ FS + + RV + +G+ FV F + + A AI + G + ++C
Sbjct: 220 LMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 273
Query: 187 WATKGAGGIEEKQNSD 202
W + + Q D
Sbjct: 274 WGKESPDMTKNFQQVD 289
Score = 42.4 bits (98), Expect = 0.002
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 20 VSSLSVRKCR-YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSSYGFIHYFDRRSAA 78
V+ S + C Y G + + +T+ L+++ F+ G + ++F ++ Y F+ + SAA
Sbjct: 197 VNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK--GYSFVRFSTHESAA 254
Query: 79 LAILTLNGRHLFGQPIKVNWAYAS 102
AI+++NG + G +K W S
Sbjct: 255 HAIVSVNGTTIEGHVVKCYWGKES 278
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1 related protein)
Length = 392
Score = 199 bits (506), Expect = 1e-50
Identities = 112/299 (37%), Positives = 172/299 (57%), Gaps = 36/299 (12%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSS-------------------YGFIH 70
YVGN+ VTE L+ ++F+ GP + CK+ ++ S Y F+
Sbjct: 12 YVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFVE 71
Query: 71 YFDRRSAALAILTLNGRHLFGQPIKVNWAYA-SGQREDTSGHYNIFVGDLSPEVTDATLF 129
+++ R AA A+ +NGR + G+ +KVNWA S Q++DTS H+++FVGDLSPE+T +
Sbjct: 72 FYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIK 131
Query: 130 ACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWAT 189
+ F+ + SDARV+ D TG+S+G+GFVSF ++ DA++AI + G+WLG RQIR NWAT
Sbjct: 132 SAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWAT 191
Query: 190 KGAGGIEEKQNSDSKSVVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDL 249
+ + Q +++K + ED V +++P+ TVY G + S T +
Sbjct: 192 RKPPAPKSTQETNTKQL------RFED-------VVNQSSPKNCTVYCGGIASGLTDQLM 238
Query: 250 HRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSYLCGKIIKCSWGSK 308
+ F G I E+RV +KG+ FVR+STH AA AI N + + G ++KC WG +
Sbjct: 239 RQTFSPFGQ--IMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTT-IEGHVVKCYWGKE 294
Score = 58.5 bits (140), Expect = 3e-08
Identities = 38/196 (19%), Positives = 83/196 (41%), Gaps = 29/196 (14%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRK----EKSSYGFIHYFDRRSAALAILTLN 85
+VG++ ++T ++ FA G + ++ + + YGF+ ++++ A AI+ +
Sbjct: 117 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176
Query: 86 GRHLFGQPIKVNWA-------------------YASGQREDTSGHYNIFVGDLSPEVTDA 126
G+ L G+ I+ NWA + + + + ++ G ++ +TD
Sbjct: 177 GQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQ 236
Query: 127 TLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCN 186
+ FS + + RV + +G+ FV F + + A AI + G + ++C
Sbjct: 237 LMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 290
Query: 187 WATKGAGGIEEKQNSD 202
W + + Q D
Sbjct: 291 WGKESPDMTKNFQQVD 306
Score = 42.4 bits (98), Expect = 0.002
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 20 VSSLSVRKCR-YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSSYGFIHYFDRRSAA 78
V+ S + C Y G + + +T+ L+++ F+ G + ++F ++ Y F+ + SAA
Sbjct: 214 VNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK--GYSFVRFSTHESAA 271
Query: 79 LAILTLNGRHLFGQPIKVNWAYAS 102
AI+++NG + G +K W S
Sbjct: 272 HAIVSVNGTTIEGHVVKCYWGKES 295
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)
Length = 386
Score = 194 bits (493), Expect = 3e-49
Identities = 112/297 (37%), Positives = 171/297 (56%), Gaps = 32/297 (10%)
Query: 27 KCRYVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSS--YGFIHYFDRRSAALAILTL 84
K YVGN+ VTE L+ ++F+ GP + CK+ + Y F+ + + R AA A+ +
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 85 NGRHLFGQPIKVNWAYA-SGQREDTSG-----------HYNIFVGDLSPEVTDATLFACF 132
NGR + G+ +KVNWA S Q++DTS H+++FVGDLSPE+T + A F
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF 126
Query: 133 SVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGA 192
+ + SDARV+ D TG+S+G+GFVSF ++ DA++AI + G+WLG RQIR NWAT+
Sbjct: 127 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 186
Query: 193 GGIEEKQNSDSKSVVELTNGSSEDGKEISSND-VPENNPQYTTVYVGNLGSEATQLDLHR 251
+ S++ K++S ++ V +++P TVY G + S T+ + +
Sbjct: 187 PAPKSTYESNT--------------KQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQ 232
Query: 252 HFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSYLCGKIIKCSWGSK 308
F G I E+RV DKG+ FVR+S+H AA AI N + + G ++KC WG +
Sbjct: 233 TFSPFGQ--IMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTT-IEGHVVKCYWGKE 286
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 (RNA-binding protein TIA-1)
(p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15
(p15-TIA-1)]
Length = 386
Score = 192 bits (487), Expect = 2e-48
Identities = 113/298 (37%), Positives = 168/298 (55%), Gaps = 34/298 (11%)
Query: 27 KCRYVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSS--YGFIHYFDRRSAALAILTL 84
K YVGN+ VTE L+ ++F+ GP + CK+ + Y F+ + + R AA A+ +
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 85 NGRHLFGQPIKVNWAYA-SGQREDTSG-----------HYNIFVGDLSPEVTDATLFACF 132
NGR + G+ +KVNWA S Q++DTS H+++FVGDLSP++T + A F
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQNHFHVFVGDLSPQITTEDIKAAF 126
Query: 133 SVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGA 192
+ + SDARV+ D TG+S+G+GFVSF ++ DA++AI + G+WLG RQIR NWAT+
Sbjct: 127 APFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 186
Query: 193 GGIEEKQNSDSK--SVVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLH 250
+ S++K S E+ N SS P TVY G + S T+ +
Sbjct: 187 PAPKSTYESNTKQLSYDEVVNQSS---------------PSNCTVYCGGVTSGLTEQLMR 231
Query: 251 RHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSYLCGKIIKCSWGSK 308
+ F G I E+RV DKG+ FVR+++H AA AI N + + G ++KC WG +
Sbjct: 232 QTFSPFGQ--IMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTT-IEGHVVKCYWGKE 286
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated
RNA-binding protein PUB1 (ARS consensus binding protein
ACBP-60) (Poly(U)-binding protein) (Poly
uridylate-binding protein)
Length = 452
Score = 150 bits (379), Expect = 5e-36
Identities = 100/340 (29%), Positives = 157/340 (45%), Gaps = 65/340 (19%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLF---RKEKSSYGFIHYFDRRSAALAILTLNG 86
YVGN+ +TE +L++ F GP+ K+ + +Y F+ Y A +A+ TLNG
Sbjct: 77 YVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNG 136
Query: 87 RHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYQSCSDARVMWD 146
+ + +K+NWA+ S Q+ + +N+FVGDL+ V D TL F + S VMWD
Sbjct: 137 KQIENNIVKINWAFQS-QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWD 195
Query: 147 QKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATK---------------- 190
+TG SRG+GFVSF SQ DAQ+A++ + G+ L R +R NWA K
Sbjct: 196 MQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNNNNNYQQRRNYG 255
Query: 191 --GAGGIEEKQNSDSKSV---------VELTNG----SSEDGKEISSNDVPENN------ 229
GG + N+++ ++ + + N S G I + +P
Sbjct: 256 NNNRGGFRQYNNNNNNNMNMGMNMNMNMNMNNSRGMPPSSMGMPIGAMPLPSQGQPQQSQ 315
Query: 230 ---------------------PQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEEVRVQR 268
P+ TT Y+GN+ AT+ DL F G I + +
Sbjct: 316 TIGLPPQVNPQAVDHIIRSAPPRVTTAYIGNIPHFATEADLIPLFQ--NFGFILDFKHYP 373
Query: 269 DKGFGFVRYSTHAEAALAIQMGNAQSYLCGKIIKCSWGSK 308
+KG F++Y TH +AA+ I + A G+ ++ WG +
Sbjct: 374 EKGCCFIKYDTHEQAAVCI-VALANFPFQGRNLRTGWGKE 412
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in
chromosome II
Length = 473
Score = 117 bits (292), Expect = 7e-26
Identities = 106/344 (30%), Positives = 159/344 (45%), Gaps = 41/344 (11%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKE----KSSYGFIHYFDRRSAALAILTLN 85
++G + VTE +Q+V+ G KL R + Y F+ + A+ A +++N
Sbjct: 96 WMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSA-MSMN 154
Query: 86 GRHLFGQP--IKVNWAYASGQREDT---SGHYNIFVGDLSPEVTDATLFACF-SVYQSCS 139
+ + G K+NWA G RE + + Y+IFVGDLSP V + +++ F S Y SC
Sbjct: 155 NKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCK 214
Query: 140 DARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQ 199
A++M D +T SRG+GFV F + D +SA+ ++ G+ G R IR AT K
Sbjct: 215 SAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLAT-------PKS 267
Query: 200 NSDSKSVVELTNGSSED-GKEISSNDVPE-NNPQYTTVYVGNLGSEATQLDLHRHFHALG 257
+ S V + S G ++ VP+ + +TV+VG L ++ +L F G
Sbjct: 268 KAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFG 327
Query: 258 AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSYLCGKI-IKCSWGSKPTPPGTAS 316
I V++ KG GFV++ A +AI Q Y G I+ SWG
Sbjct: 328 E--IVYVKIPPGKGCGFVQFVNRQSAEIAI--NQLQGYPLGNSRIRLSWGRN-------Q 376
Query: 317 NPLPPPAAAPLPGLSATDILAYERQLAMSKMGGVHAALMHPQAQ 360
NP+ PA +S T I A AMS + PQAQ
Sbjct: 377 NPIAAPALNYQSQVSQTTIPATSLFPAMS---------LPPQAQ 411
Score = 55.8 bits (133), Expect = 2e-07
Identities = 60/297 (20%), Positives = 123/297 (41%), Gaps = 62/297 (20%)
Query: 100 YASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVS 159
Y S + E+ +++G+L P VT+A + ++ +++ ++ TG + G+ FV
Sbjct: 81 YGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVE 140
Query: 160 FRSQQDAQSAINDLTGKWLGSRQI-RCNWATKGAGGIEEKQNSDSKSVVELTNGSSEDGK 218
F S +A SA++ G+ + + NWA+ GG+ EK S +
Sbjct: 141 FASPHEASSAMSMNNKPIPGTNHLFKLNWAS--GGGLREKSISKASEY------------ 186
Query: 219 EISSNDVPENNPQYTTVYVGNLGSEATQLDLH-----RHFHALGAGVIEEVRVQRDKGFG 273
+++VG+L + D++ R+ A ++ + + +G+G
Sbjct: 187 ---------------SIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYG 231
Query: 274 FVRYSTHAEAALAIQMGNAQSYLCGKIIKCSWGSKPTPPGTASNPLPPPAAAPLPGLSAT 333
FVR++ + A + Q +C G +P G A+ P + A + S
Sbjct: 232 FVRFTDENDQKSA--LAEMQGQIC--------GDRPIRVGLAT----PKSKAHV--FSPV 275
Query: 334 DILAYERQLAMSKMGGVHAALMHPQAQHPLKQAAIGASQAIYDGGFQNVAAAQQMMY 390
+++ ++M +G AA P+ Q A A+ ++ GG + +++ Y
Sbjct: 276 NVV----PVSMPPVGFYSAA-------QPVPQFADTANSTVFVGGLSKFVSEEELKY 321
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1
Length = 632
Score = 108 bits (271), Expect = 2e-23
Identities = 90/318 (28%), Positives = 148/318 (46%), Gaps = 28/318 (8%)
Query: 14 IQVLAAVSSLSVRKCRYVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSS------YG 67
+Q +A V S + ++G++ + +Q+++A K+ R + SS Y
Sbjct: 73 LQDVAGVGS-KMSDTLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYC 131
Query: 68 FIHYFDRRSAALAILTLNGRHLFGQ--PIKVNWAYASGQREDT----SGHYNIFVGDLSP 121
F+ + +A A++ N + G K+NWA G + + ++IFVGDL P
Sbjct: 132 FVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLP 191
Query: 122 EVTDATLFACF-SVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGS 180
D+ LF F S+Y SC+ A+++ D TG SR +GFV F S+++ Q A+ + G
Sbjct: 192 TTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQG 251
Query: 181 RQIRCNWAT-KGAGGIEEKQNSDSKSVVELTNGSSEDGKEISSNDVPENNPQYTTVYVGN 239
R +R + A+ K I + +V + + + +++ S D P TTV+VG
Sbjct: 252 RPLRISVASPKSRASIAA---DSALGIVPTSTSNRQPNQDLCSMD-----PLNTTVFVGG 303
Query: 240 LGSEATQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSYLCG- 298
L S ++ DL F G I +++ KG GFV+YS + A AI Q L G
Sbjct: 304 LASNLSEKDLQVCFQPFGR--ILNIKIPFGKGCGFVQYSEKSAAEKAI--NTMQGALVGT 359
Query: 299 KIIKCSWGSKPTPPGTAS 316
I+ +WG P S
Sbjct: 360 SHIRLAWGHNTLPVSALS 377
>PAB4_HUMAN (Q13310) Polyadenylate-binding protein 4
(Poly(A)-binding protein 4) (PABP 4) (Inducible
poly(A)-binding protein) (iPABP) (Activated-platelet
protein-1) (APP-1)
Length = 644
Score = 101 bits (251), Expect = 4e-21
Identities = 80/296 (27%), Positives = 137/296 (46%), Gaps = 49/296 (16%)
Query: 18 AAVSSLSVRKCRYVGNVHTQVTEPLLQEVFAGTGPVEGCKLFR----KEKSSYGFIHYFD 73
AA SS + YVG++H+ VTE +L E F+ GPV ++ R + Y ++++
Sbjct: 3 AAASSYPMASL-YVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 74 RRSAALAILTLNGRHLFGQPIKVNWAYASGQREDT---SGHYNIFVGDLSPEVTDATLFA 130
A A+ T+N + G+PI++ W+ QR+ + SG N+F+ +L + + L+
Sbjct: 62 PADAERALDTMNFDVIKGKPIRIMWS----QRDPSLRKSGVGNVFIKNLDKSIDNKALYD 117
Query: 131 CFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATK 190
FS + + +V+ D+ S+G+ FV F +Q+ A AI + G L R++
Sbjct: 118 TFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKV------- 168
Query: 191 GAGGIEEKQNSDSKSVVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLH 250
G + ++ ++ ++ ++T VY+ N G E L
Sbjct: 169 FVGRFKSRKEREA--------------------ELGAKAKEFTNVYIKNFGEEVDDESLK 208
Query: 251 RHFHALGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNAQSYLCGKII 301
F G + V+V RD KGFGFV Y H +A A++ N + + GKII
Sbjct: 209 ELFSQFGKTL--SVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKE-ISGKII 261
Score = 87.8 bits (216), Expect = 4e-17
Identities = 78/289 (26%), Positives = 127/289 (42%), Gaps = 37/289 (12%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSS--YGFIHYFDRRSAALAILTLNGR 87
++ N+ + L + F+ G + CK+ E S Y F+H+ + +A AI +NG
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGM 161
Query: 88 HLFGQPIKVNWAYASGQREDTSG-----HYNIFVGDLSPEVTDATLFACFSVYQSCSDAR 142
L + + V + +RE G N+++ + EV D +L FS + +
Sbjct: 162 LLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVK 221
Query: 143 VMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSD 202
VM D G+S+GFGFVS+ +DA A+ ++ GK + + I A K E+Q
Sbjct: 222 VMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKV----ERQAEL 276
Query: 203 SKSVVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIE 262
+ +L + IS Q +Y+ NL L + F G+
Sbjct: 277 KRKFEQLKQ------ERIS-------RYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSA 323
Query: 263 EVRVQ--RDKGFGFVRYSTHAEAALAIQMGNAQSYLCGKIIKCSWGSKP 309
+V ++ R KGFGFV +S+ EA A+ N G+I+ GSKP
Sbjct: 324 KVMLEDGRSKGFGFVCFSSPEEATKAVTEMN------GRIV----GSKP 362
Score = 69.7 bits (169), Expect = 1e-11
Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 20/172 (11%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRK---EKSSYGFIHYFDRRSAALAILTLNG 86
Y+ N +V + L+E+F+ G K+ R + +GF+ Y A A+ +NG
Sbjct: 194 YIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNG 253
Query: 87 RHLFGQPIKVNWAYASGQRE------------DTSGHY---NIFVGDLSPEVTDATLFAC 131
+ + G+ I V A +R+ + Y N+++ +L + D L
Sbjct: 254 KEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKE 313
Query: 132 FSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQI 183
FS + S + A+VM + GRS+GFGFV F S ++A A+ ++ G+ +GS+ +
Sbjct: 314 FSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Score = 34.3 bits (77), Expect = 0.56
Identities = 24/81 (29%), Positives = 40/81 (48%), Gaps = 9/81 (11%)
Query: 234 TVYVGNLGSEATQLDLHRHFHALGAGVIEEVRVQRDK------GFGFVRYSTHAEAALAI 287
++YVG+L S+ T+ L+ F AG + +RV RD G+ +V + A+A A+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSP--AGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 288 QMGNAQSYLCGKIIKCSWGSK 308
N + GK I+ W +
Sbjct: 70 DTMNF-DVIKGKPIRIMWSQR 89
Score = 32.7 bits (73), Expect = 1.6
Identities = 18/79 (22%), Positives = 39/79 (48%), Gaps = 2/79 (2%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSS--YGFIHYFDRRSAALAILTLNGR 87
Y+ N+ + + L++ F+ G + K+ ++ S +GF+ + A A+ +NGR
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 88 HLFGQPIKVNWAYASGQRE 106
+ +P+ V A +R+
Sbjct: 357 IVGSKPLYVALAQRKEERK 375
>PAB2_ARATH (P42731) Polyadenylate-binding protein 2
(Poly(A)-binding protein 2) (PABP 2)
Length = 629
Score = 97.8 bits (242), Expect = 4e-20
Identities = 75/273 (27%), Positives = 123/273 (44%), Gaps = 38/273 (13%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFR----KEKSSYGFIHYFDRRSAALAILTLN 85
YVG++ VT+ L + F G V ++ R + YG++++ + + AA AI LN
Sbjct: 39 YVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELN 98
Query: 86 GRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYQSCSDARVMW 145
L+G+PI+V +++ SG NIF+ +L + L FS + + +V
Sbjct: 99 YIPLYGKPIRVMYSHRDPSVR-RSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAV 157
Query: 146 DQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSDSKS 205
D +G+S+G+GFV + +++ AQ AI L G L +Q+ G +Q DS +
Sbjct: 158 DS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVY-------VGPFLRRQERDSTA 209
Query: 206 VVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALG---AGVIE 262
N ++T VYV NL T DL F G + V+
Sbjct: 210 ----------------------NKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVM 247
Query: 263 EVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSY 295
+ + KGFGFV + +AA A++ N +
Sbjct: 248 KDGEGKSKGFGFVNFENADDAARAVESLNGHKF 280
Score = 63.5 bits (153), Expect = 9e-10
Identities = 44/172 (25%), Positives = 81/172 (46%), Gaps = 19/172 (11%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRK---EKSSYGFIHYFDRRSAALAILTLNG 86
YV N+ T+ L+ F G + + + + +GF+++ + AA A+ +LNG
Sbjct: 218 YVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNG 277
Query: 87 RHLFGQPIKVNWAYASGQRE---------------DTSGHYNIFVGDLSPEVTDATLFAC 131
+ V A +RE D N++V +L P ++D L
Sbjct: 278 HKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEI 337
Query: 132 FSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQI 183
FS + + + ++VM D G S+G GFV+F + ++A A++ L+GK + S+ +
Sbjct: 338 FSPFGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMSQLSGKMIESKPL 388
Score = 32.7 bits (73), Expect = 1.6
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 233 TTVYVGNLGSEATQLDLHRHFHALG----AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQ 288
T++YVG+L T L F +G V ++ +R G+G+V ++ +AA AIQ
Sbjct: 36 TSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 95
>S3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit)
Length = 424
Score = 96.7 bits (239), Expect = 9e-20
Identities = 56/166 (33%), Positives = 90/166 (53%), Gaps = 7/166 (4%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRK----EKSSYGFIHYFDRRSAALAILTLN 85
YVG + +V+EPLL E+F GPV + + + YGF+ + A AI +N
Sbjct: 16 YVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMN 75
Query: 86 GRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYQSCSDA-RVM 144
L+G+PI+VN A A + D NIF+G+L PE+ + L+ FS + ++M
Sbjct: 76 MIKLYGKPIRVNKASAHNKNLDVGA--NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIM 133
Query: 145 WDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATK 190
D TG S+G+ F++F S + +AI + G++L +R I ++A K
Sbjct: 134 RDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179
Score = 66.2 bits (160), Expect = 1e-10
Identities = 65/262 (24%), Positives = 111/262 (41%), Gaps = 66/262 (25%)
Query: 101 ASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSF 160
A+G + + ++VG L +V++ L+ F + + D+ TG+ +G+GFV F
Sbjct: 2 AAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEF 61
Query: 161 RSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSDSKSVVELTNGSSEDGKEI 220
S++DA AI + L + IR N K ++ +K++
Sbjct: 62 LSEEDADYAIKIMNMIKLYGKPIRVN-----------KASAHNKNL-------------- 96
Query: 221 SSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEEVRVQRD------KGFGF 274
DV N +++GNL E + L+ F A G +++ ++ RD KG+ F
Sbjct: 97 ---DVGAN------IFIGNLDPEIDEKLLYDTFSAFGV-ILQTPKIMRDPDTGNSKGYAF 146
Query: 275 VRYSTHAEAALAIQMGNAQSYLCGKIIKCSWGSKPTPPG-----------TASNPL---- 319
+ +++ + AI+ N Q YLC + I S+ K G A NPL
Sbjct: 147 INFASFDASDAAIEAMNGQ-YLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQAD 205
Query: 320 ---------PPPAAAPLPGLSA 332
PPP +AP P +S+
Sbjct: 206 RPHQLFADAPPPPSAPNPVVSS 227
Score = 40.4 bits (93), Expect = 0.008
Identities = 22/86 (25%), Positives = 45/86 (51%), Gaps = 5/86 (5%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPV-EGCKLFRK----EKSSYGFIHYFDRRSAALAILTL 84
++GN+ ++ E LL + F+ G + + K+ R Y FI++ ++ AI +
Sbjct: 103 FIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAM 162
Query: 85 NGRHLFGQPIKVNWAYASGQREDTSG 110
NG++L +PI V++A+ + + G
Sbjct: 163 NGQYLCNRPITVSYAFKKDSKGERHG 188
>NAM8_YEAST (Q00539) NAM8 protein
Length = 523
Score = 94.7 bits (234), Expect = 4e-19
Identities = 87/288 (30%), Positives = 135/288 (46%), Gaps = 49/288 (17%)
Query: 61 KEKSSYGFIHYFDRRSAALAILTLNGRHLFGQP---IKVNWAYASGQREDTS-------G 110
K Y F+ + AA A+L NG + P +K+NWA +S + S
Sbjct: 103 KNNQGYCFVDFPSSTHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGN 161
Query: 111 HYNIFVGDLSPEVTDATLFACF-SVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSA 169
+ +IFVGDL+P VT++ LF F + Y S S A+++ DQ TG S+G+GFV F + + Q A
Sbjct: 162 NCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLA 221
Query: 170 INDLTGKWLGSRQIRCNWATKG-----AGGIEEKQNSD------------SKSVVELTNG 212
++++ G +L R I+ T G +G + ++S SK L+NG
Sbjct: 222 LSEMQGVFLNGRAIKVG-PTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSNG 280
Query: 213 SSEDG---KEISSNDVPE---------NNPQYTTVYVGNLGSEATQLDLHRHFHALGAGV 260
++ G +S P +P TTV++G L S T+ +L +F G
Sbjct: 281 NNNMGFKRNHMSQFIYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPF--GT 338
Query: 261 IEEVRVQRDKGFGFVRY--STHAEAALAIQMGNAQSYLCGKIIKCSWG 306
I V++ K GFV+Y AEAA+A G + ++ SWG
Sbjct: 339 IVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQGFP---IANSRVRLSWG 383
Score = 33.9 bits (76), Expect = 0.73
Identities = 20/75 (26%), Positives = 36/75 (47%), Gaps = 2/75 (2%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLNGRHL 89
++G + + VTE L+ F G + K+ GF+ Y DR SA AI + G +
Sbjct: 316 FIGGLSSLVTEDELRAYFQPFGTIVYVKI--PVGKCCGFVQYVDRLSAEAAIAGMQGFPI 373
Query: 90 FGQPIKVNWAYASGQ 104
++++W ++ Q
Sbjct: 374 ANSRVRLSWGRSAKQ 388
>PAB1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding
protein 1) (PABP 1)
Length = 636
Score = 94.4 bits (233), Expect = 5e-19
Identities = 71/282 (25%), Positives = 129/282 (45%), Gaps = 44/282 (15%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFR----KEKSSYGFIHYFDRRSAALAILTLN 85
YVG++H VTE +L E F+ GP+ ++ R + Y ++++ A A+ T+N
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Query: 86 GRHLFGQPIKVNWAYASGQREDT---SGHYNIFVGDLSPEVTDATLFACFSVYQSCSDAR 142
+ G+P+++ W+ QR+ + SG NIF+ +L + + L+ FS + + +
Sbjct: 74 FDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 143 VMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSD 202
V+ D+ S+G+GFV F +Q+ A+ AI + G L R++ G + ++ +
Sbjct: 130 VVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKV-------FVGRFKSRKERE 180
Query: 203 SKSVVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIE 262
+ ++ ++T VY+ N G + L F G +
Sbjct: 181 A--------------------ELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 220
Query: 263 EVRVQ---RDKGFGFVRYSTHAEAALAIQMGNAQSYLCGKII 301
+V + KGFGFV + H +A A+ N + L GK I
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE-LNGKQI 261
Score = 92.0 bits (227), Expect = 2e-18
Identities = 72/273 (26%), Positives = 120/273 (43%), Gaps = 27/273 (9%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSS--YGFIHYFDRRSAALAILTLNGR 87
++ N+ + L + F+ G + CK+ E S YGF+H+ + +A AI +NG
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGM 161
Query: 88 HLFGQPIKVNWAYASGQREDTSG-----HYNIFVGDLSPEVTDATLFACFSVYQSCSDAR 142
L + + V + +RE G N+++ + ++ D L F + +
Sbjct: 162 LLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVK 221
Query: 143 VMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSD 202
VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K E+Q
Sbjct: 222 VMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV----ERQTEL 276
Query: 203 SKSVVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIE 262
+ ++ Q +YV NL L + F G
Sbjct: 277 KRKFEQMKQDRI-------------TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 323
Query: 263 EVRVQ--RDKGFGFVRYSTHAEAALAIQMGNAQ 293
+V ++ R KGFGFV +S+ EA A+ N +
Sbjct: 324 KVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Score = 65.1 bits (157), Expect = 3e-10
Identities = 46/172 (26%), Positives = 81/172 (46%), Gaps = 20/172 (11%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSS---YGFIHYFDRRSAALAILTLNG 86
Y+ N + + L+E+F GP K+ E +GF+ + A A+ +NG
Sbjct: 194 YIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 87 RHLFGQPIKVNWAYASGQRE------------DTSGHY---NIFVGDLSPEVTDATLFAC 131
+ L G+ I V A +R+ D Y N++V +L + D L
Sbjct: 254 KELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKE 313
Query: 132 FSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQI 183
FS + + + A+VM + GRS+GFGFV F S ++A A+ ++ G+ + ++ +
Sbjct: 314 FSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Score = 32.0 bits (71), Expect = 2.8
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRK--EKSSYGFIHYFDRRSAALAILTLNGR 87
YV N+ + + L++ F+ G + K+ + +GF+ + A A+ +NGR
Sbjct: 297 YVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 88 HLFGQPIKVNWAYASGQRE 106
+ +P+ V A +R+
Sbjct: 357 IVATKPLYVALAQRKEERQ 375
>PAB1_MOUSE (P29341) Polyadenylate-binding protein 1
(Poly(A)-binding protein 1) (PABP 1)
Length = 636
Score = 94.4 bits (233), Expect = 5e-19
Identities = 74/282 (26%), Positives = 127/282 (44%), Gaps = 44/282 (15%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFR----KEKSSYGFIHYFDRRSAALAILTLN 85
YVG++H VTE +L E F+ GP+ ++ R + Y ++++ A A+ T+N
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Query: 86 GRHLFGQPIKVNWAYASGQREDT---SGHYNIFVGDLSPEVTDATLFACFSVYQSCSDAR 142
+ G+P+++ W+ QR+ + SG NIF+ +L + + L+ FS + + +
Sbjct: 74 FDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 143 VMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSD 202
V+ D+ S+G+GFV F +Q+ A+ AI + G L R++ + S
Sbjct: 130 VVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKV-----------FVGRFKSQ 176
Query: 203 SKSVVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIE 262
+ EL + E +T VY+ N G + L F G +
Sbjct: 177 KEREAELGARAKE----------------FTNVYIKNFGEDMDDERLKELFGKFGPALSV 220
Query: 263 EVRVQ---RDKGFGFVRYSTHAEAALAIQMGNAQSYLCGKII 301
+V + KGFGFV + H +A A+ N + L GK I
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE-LNGKQI 261
Score = 92.4 bits (228), Expect = 2e-18
Identities = 72/273 (26%), Positives = 120/273 (43%), Gaps = 27/273 (9%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSS--YGFIHYFDRRSAALAILTLNGR 87
++ N+ + L + F+ G + CK+ E S YGF+H+ + +A AI +NG
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGM 161
Query: 88 HLFGQPIKVNWAYASGQREDTSG-----HYNIFVGDLSPEVTDATLFACFSVYQSCSDAR 142
L + + V + +RE G N+++ + ++ D L F + +
Sbjct: 162 LLNDRKVFVGRFKSQKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVK 221
Query: 143 VMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSD 202
VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K E+Q
Sbjct: 222 VMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV----ERQTEL 276
Query: 203 SKSVVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIE 262
+ ++ Q +YV NL L + F G
Sbjct: 277 KRKFEQMKQDRI-------------TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 323
Query: 263 EVRVQ--RDKGFGFVRYSTHAEAALAIQMGNAQ 293
+V ++ R KGFGFV +S+ EA A+ N +
Sbjct: 324 KVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Score = 65.1 bits (157), Expect = 3e-10
Identities = 46/172 (26%), Positives = 81/172 (46%), Gaps = 20/172 (11%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSS---YGFIHYFDRRSAALAILTLNG 86
Y+ N + + L+E+F GP K+ E +GF+ + A A+ +NG
Sbjct: 194 YIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 87 RHLFGQPIKVNWAYASGQRE------------DTSGHY---NIFVGDLSPEVTDATLFAC 131
+ L G+ I V A +R+ D Y N++V +L + D L
Sbjct: 254 KELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKE 313
Query: 132 FSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQI 183
FS + + + A+VM + GRS+GFGFV F S ++A A+ ++ G+ + ++ +
Sbjct: 314 FSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Score = 32.0 bits (71), Expect = 2.8
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRK--EKSSYGFIHYFDRRSAALAILTLNGR 87
YV N+ + + L++ F+ G + K+ + +GF+ + A A+ +NGR
Sbjct: 297 YVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 88 HLFGQPIKVNWAYASGQRE 106
+ +P+ V A +R+
Sbjct: 357 IVATKPLYVALAQRKEERQ 375
>PAB1_XENLA (P20965) Polyadenylate-binding protein 1
(Poly(A)-binding protein 1) (PABP 1)
Length = 633
Score = 94.0 bits (232), Expect = 6e-19
Identities = 66/268 (24%), Positives = 124/268 (45%), Gaps = 43/268 (16%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFR----KEKSSYGFIHYFDRRSAALAILTLN 85
YVG++H VTE +L E F+ GP+ ++ R + Y ++++ A A+ T+N
Sbjct: 14 YVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Query: 86 GRHLFGQPIKVNWAYASGQREDT---SGHYNIFVGDLSPEVTDATLFACFSVYQSCSDAR 142
+ G+P+++ W+ QR+ + SG NIF+ +L + + L+ FS + + +
Sbjct: 74 FDVIKGRPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 143 VMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSD 202
V+ D+ S+G+GFV F +Q+ A+ AI+ + G L R++ G + ++ +
Sbjct: 130 VVCDE--NGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKV-------FVGRFKSRKERE 180
Query: 203 SKSVVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIE 262
+ ++ ++T VY+ N G + L F G +
Sbjct: 181 A--------------------ELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSV 220
Query: 263 EVRVQ---RDKGFGFVRYSTHAEAALAI 287
+V + KGFGFV + H +A A+
Sbjct: 221 KVMTDDNGKSKGFGFVSFERHEDAQKAV 248
Score = 87.4 bits (215), Expect = 6e-17
Identities = 71/273 (26%), Positives = 118/273 (43%), Gaps = 27/273 (9%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSS--YGFIHYFDRRSAALAILTLNGR 87
++ N+ + L + F+ G + CK+ E S YGF+H+ + +A AI +NG
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGM 161
Query: 88 HLFGQPIKVNWAYASGQREDTSG-----HYNIFVGDLSPEVTDATLFACFSVYQSCSDAR 142
L + + V + +RE G N+++ + ++ D L F Y +
Sbjct: 162 LLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVK 221
Query: 143 VMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSD 202
VM D G+S+GFGFVSF +DAQ A++++ GK + + + A K E+Q
Sbjct: 222 VMTDDN-GKSKGFGFVSFERHEDAQKAVDEMYGKDMNGKSMFVGRAQKKV----ERQTEL 276
Query: 203 SKSVVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIE 262
+ ++ N Q +YV NL L + F G
Sbjct: 277 KRKFEQM-------------NQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSA 323
Query: 263 EVRVQ--RDKGFGFVRYSTHAEAALAIQMGNAQ 293
+V ++ R KGFGFV +S+ EA A+ N +
Sbjct: 324 KVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Score = 56.2 bits (134), Expect = 1e-07
Identities = 41/172 (23%), Positives = 79/172 (45%), Gaps = 20/172 (11%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSS---YGFIHYFDRRSAALAILTLNG 86
Y+ N + + L+E+F GP K+ + +GF+ + A A+ + G
Sbjct: 194 YIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMYG 253
Query: 87 RHLFGQPIKVNWAYASGQRE------------DTSGHY---NIFVGDLSPEVTDATLFAC 131
+ + G+ + V A +R+ D Y N++V +L + D L
Sbjct: 254 KDMNGKSMFVGRAQKKVERQTELKRKFEQMNQDRITRYQGVNLYVKNLDDGIDDERLRKE 313
Query: 132 FSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQI 183
F + + + A+VM + GRS+GFGFV F S ++A A+ ++ G+ + ++ +
Sbjct: 314 FLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Score = 32.0 bits (71), Expect = 2.8
Identities = 24/87 (27%), Positives = 41/87 (46%), Gaps = 11/87 (12%)
Query: 230 PQY--TTVYVGNLGSEATQLDLHRHFHALGAGVIEEVRVQRDK------GFGFVRYSTHA 281
P Y ++YVG+L + T+ L+ F AG I +RV RD G+ +V + A
Sbjct: 6 PSYPMASLYVGDLHQDVTEAMLYEKFSP--AGPILSIRVCRDMITRRSLGYAYVNFQQPA 63
Query: 282 EAALAIQMGNAQSYLCGKIIKCSWGSK 308
+A A+ N + G+ ++ W +
Sbjct: 64 DAERALDTMNF-DVIKGRPVRIMWSQR 89
Score = 31.2 bits (69), Expect = 4.8
Identities = 18/79 (22%), Positives = 36/79 (44%), Gaps = 2/79 (2%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRK--EKSSYGFIHYFDRRSAALAILTLNGR 87
YV N+ + + L++ F G + K+ + +GF+ + A A+ +NGR
Sbjct: 297 YVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 88 HLFGQPIKVNWAYASGQRE 106
+ +P+ V A +R+
Sbjct: 357 IVATKPLYVALAQRKEERQ 375
>PAB1_HUMAN (P11940) Polyadenylate-binding protein 1
(Poly(A)-binding protein 1) (PABP 1)
Length = 636
Score = 93.6 bits (231), Expect = 8e-19
Identities = 71/282 (25%), Positives = 129/282 (45%), Gaps = 44/282 (15%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFR----KEKSSYGFIHYFDRRSAALAILTLN 85
YVG++H VTE +L E F+ GP+ ++ R + Y ++++ A A+ T+N
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Query: 86 GRHLFGQPIKVNWAYASGQREDT---SGHYNIFVGDLSPEVTDATLFACFSVYQSCSDAR 142
+ G+P+++ W+ QR+ + SG NIF+ +L + + L+ FS + + +
Sbjct: 74 FDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 143 VMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSD 202
V+ D+ S+G+GFV F +Q+ A+ AI + G L R++ G + ++ +
Sbjct: 130 VVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKV-------FVGRFKSRKERE 180
Query: 203 SKSVVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIE 262
+ ++ ++T VY+ N G + L F G +
Sbjct: 181 A--------------------ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 263 EVRVQ---RDKGFGFVRYSTHAEAALAIQMGNAQSYLCGKII 301
+V + KGFGFV + H +A A+ N + L GK I
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE-LNGKQI 261
Score = 91.7 bits (226), Expect = 3e-18
Identities = 72/273 (26%), Positives = 120/273 (43%), Gaps = 27/273 (9%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSS--YGFIHYFDRRSAALAILTLNGR 87
++ N+ + L + F+ G + CK+ E S YGF+H+ + +A AI +NG
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGM 161
Query: 88 HLFGQPIKVNWAYASGQREDTSG-----HYNIFVGDLSPEVTDATLFACFSVYQSCSDAR 142
L + + V + +RE G N+++ + ++ D L F + +
Sbjct: 162 LLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
Query: 143 VMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSD 202
VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K E+Q
Sbjct: 222 VMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV----ERQTEL 276
Query: 203 SKSVVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIE 262
+ ++ Q +YV NL L + F G
Sbjct: 277 KRKFEQMKQDRI-------------TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 323
Query: 263 EVRVQ--RDKGFGFVRYSTHAEAALAIQMGNAQ 293
+V ++ R KGFGFV +S+ EA A+ N +
Sbjct: 324 KVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Score = 63.9 bits (154), Expect = 7e-10
Identities = 45/172 (26%), Positives = 81/172 (46%), Gaps = 20/172 (11%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSS---YGFIHYFDRRSAALAILTLNG 86
Y+ N + + L+++F GP K+ E +GF+ + A A+ +NG
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 87 RHLFGQPIKVNWAYASGQRE------------DTSGHY---NIFVGDLSPEVTDATLFAC 131
+ L G+ I V A +R+ D Y N++V +L + D L
Sbjct: 254 KELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKE 313
Query: 132 FSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQI 183
FS + + + A+VM + GRS+GFGFV F S ++A A+ ++ G+ + ++ +
Sbjct: 314 FSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Score = 32.0 bits (71), Expect = 2.8
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRK--EKSSYGFIHYFDRRSAALAILTLNGR 87
YV N+ + + L++ F+ G + K+ + +GF+ + A A+ +NGR
Sbjct: 297 YVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 88 HLFGQPIKVNWAYASGQRE 106
+ +P+ V A +R+
Sbjct: 357 IVATKPLYVALAQRKEERQ 375
>PAB1_BOVIN (P61286) Polyadenylate-binding protein 1
(Poly(A)-binding protein 1) (PABP 1)
Length = 636
Score = 93.6 bits (231), Expect = 8e-19
Identities = 71/282 (25%), Positives = 129/282 (45%), Gaps = 44/282 (15%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFR----KEKSSYGFIHYFDRRSAALAILTLN 85
YVG++H VTE +L E F+ GP+ ++ R + Y ++++ A A+ T+N
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMN 73
Query: 86 GRHLFGQPIKVNWAYASGQREDT---SGHYNIFVGDLSPEVTDATLFACFSVYQSCSDAR 142
+ G+P+++ W+ QR+ + SG NIF+ +L + + L+ FS + + +
Sbjct: 74 FDVIKGKPVRIMWS----QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCK 129
Query: 143 VMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSD 202
V+ D+ S+G+GFV F +Q+ A+ AI + G L R++ G + ++ +
Sbjct: 130 VVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKV-------FVGRFKSRKERE 180
Query: 203 SKSVVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIE 262
+ ++ ++T VY+ N G + L F G +
Sbjct: 181 A--------------------ELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 263 EVRVQ---RDKGFGFVRYSTHAEAALAIQMGNAQSYLCGKII 301
+V + KGFGFV + H +A A+ N + L GK I
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE-LNGKQI 261
Score = 91.7 bits (226), Expect = 3e-18
Identities = 72/273 (26%), Positives = 120/273 (43%), Gaps = 27/273 (9%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSS--YGFIHYFDRRSAALAILTLNGR 87
++ N+ + L + F+ G + CK+ E S YGF+H+ + +A AI +NG
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGM 161
Query: 88 HLFGQPIKVNWAYASGQREDTSG-----HYNIFVGDLSPEVTDATLFACFSVYQSCSDAR 142
L + + V + +RE G N+++ + ++ D L F + +
Sbjct: 162 LLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
Query: 143 VMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSD 202
VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K E+Q
Sbjct: 222 VMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV----ERQTEL 276
Query: 203 SKSVVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIE 262
+ ++ Q +YV NL L + F G
Sbjct: 277 KRKFEQMKQDRI-------------TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSA 323
Query: 263 EVRVQ--RDKGFGFVRYSTHAEAALAIQMGNAQ 293
+V ++ R KGFGFV +S+ EA A+ N +
Sbjct: 324 KVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Score = 63.9 bits (154), Expect = 7e-10
Identities = 45/172 (26%), Positives = 81/172 (46%), Gaps = 20/172 (11%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSS---YGFIHYFDRRSAALAILTLNG 86
Y+ N + + L+++F GP K+ E +GF+ + A A+ +NG
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 87 RHLFGQPIKVNWAYASGQRE------------DTSGHY---NIFVGDLSPEVTDATLFAC 131
+ L G+ I V A +R+ D Y N++V +L + D L
Sbjct: 254 KELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKE 313
Query: 132 FSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQI 183
FS + + + A+VM + GRS+GFGFV F S ++A A+ ++ G+ + ++ +
Sbjct: 314 FSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Score = 32.0 bits (71), Expect = 2.8
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRK--EKSSYGFIHYFDRRSAALAILTLNGR 87
YV N+ + + L++ F+ G + K+ + +GF+ + A A+ +NGR
Sbjct: 297 YVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 88 HLFGQPIKVNWAYASGQRE 106
+ +P+ V A +R+
Sbjct: 357 IVATKPLYVALAQRKEERQ 375
>PAB3_HUMAN (Q9H361) Polyadenylate-binding protein 3
(Poly(A)-binding protein 3) (PABP 3) (Testis-specific
poly(A)-binding protein)
Length = 631
Score = 90.9 bits (224), Expect = 5e-18
Identities = 72/273 (26%), Positives = 119/273 (43%), Gaps = 27/273 (9%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSS--YGFIHYFDRRSAALAILTLNGR 87
+V N+ + L + + G + C + E S YGF+H+ +A AI +NG
Sbjct: 102 FVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGM 161
Query: 88 HLFGQPIKVNWAYASGQREDTSGHY-----NIFVGDLSPEVTDATLFACFSVYQSCSDAR 142
L G+ + V + +RE G N+++ + ++ D L F + +
Sbjct: 162 LLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVK 221
Query: 143 VMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSD 202
VM D+ +G+S+GFGFVSF +DAQ A++++ GK L +QI A K E+Q
Sbjct: 222 VMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV----ERQTEL 276
Query: 203 SKSVVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIE 262
++ ++ Q +YV NL L + F G
Sbjct: 277 KRTFEQMKQDRI-------------TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSA 323
Query: 263 EVRVQ--RDKGFGFVRYSTHAEAALAIQMGNAQ 293
+V ++ R KGFGFV +S+ EA A+ N +
Sbjct: 324 KVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Score = 89.0 bits (219), Expect = 2e-17
Identities = 70/282 (24%), Positives = 127/282 (44%), Gaps = 44/282 (15%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFR----KEKSSYGFIHYFDRRSAALAILTLN 85
YVG++H VTE +L E F+ GP+ ++ R S+Y ++++ + A A+ T+N
Sbjct: 14 YVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTMN 73
Query: 86 GRHLFGQPIKVNWAYASGQREDT---SGHYNIFVGDLSPEVTDATLFACFSVYQSCSDAR 142
+ G+P+++ W+ QR+ + SG NIFV +L + + L+ S + +
Sbjct: 74 FDVIKGKPVRIMWS----QRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCN 129
Query: 143 VMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSD 202
V+ D+ S+G+GFV F + + A+ AI + G L R++ G + ++ +
Sbjct: 130 VVCDE--NGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKV-------FVGQFKSRKERE 180
Query: 203 SKSVVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIE 262
+ ++ ++ VY+ N G + L F G +
Sbjct: 181 A--------------------ELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 263 EVRVQ---RDKGFGFVRYSTHAEAALAIQMGNAQSYLCGKII 301
+V + KGFGFV + H +A A+ N + L GK I
Sbjct: 221 KVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE-LNGKQI 261
Score = 65.5 bits (158), Expect = 2e-10
Identities = 45/172 (26%), Positives = 81/172 (46%), Gaps = 20/172 (11%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSS---YGFIHYFDRRSAALAILTLNG 86
Y+ N + + L+++F GP K+ E +GF+ + A A+ +NG
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNG 253
Query: 87 RHLFGQPIKVNWAYASGQRE------------DTSGHY---NIFVGDLSPEVTDATLFAC 131
+ L G+ I V A +R+ D Y N++V +L + D L
Sbjct: 254 KELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKA 313
Query: 132 FSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQI 183
FS + + + A+VM + GRS+GFGFV F S ++A A+ ++ G+ + ++ +
Sbjct: 314 FSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Score = 32.7 bits (73), Expect = 1.6
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRK--EKSSYGFIHYFDRRSAALAILTLNGR 87
YV N+ + + L++ F+ G + K+ + +GF+ + A A+ +NGR
Sbjct: 297 YVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 88 HLFGQPIKVNWAYASGQRE 106
+ +P+ V A +R+
Sbjct: 357 IVATKPLYVALAQRKEERQ 375
>YP85_CAEEL (Q09442) Hypothetical RNA-binding protein C08B11.5 in
chromosome II
Length = 388
Score = 89.7 bits (221), Expect = 1e-17
Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 7/166 (4%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSAALAILTLN 85
YVG + +V+E +L E+ GPV + + ++ +GF+ + A AI LN
Sbjct: 16 YVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILN 75
Query: 86 GRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYQSCSDA-RVM 144
L+G+PIKVN A A + D NIFVG+L PEV + L+ FS + ++M
Sbjct: 76 MIKLYGKPIKVNKASAHEKNMDVGA--NIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIM 133
Query: 145 WDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATK 190
D +G S+GF F++F S + + +A+ + G++L +R I ++A K
Sbjct: 134 RDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFK 179
Score = 60.5 bits (145), Expect = 7e-09
Identities = 73/295 (24%), Positives = 117/295 (38%), Gaps = 72/295 (24%)
Query: 114 IFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDL 173
I+VG L +V+++ L+ + D+ T +GFGFV F ++DA AI L
Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74
Query: 174 TGKWLGSRQIRCNWATKGAGGIEEKQNSDSKSVVELTNGSSEDGKEISSNDVPENNPQYT 233
L + I+ N A+ + E ++ +N
Sbjct: 75 NMIKLYGKPIKVNKAS-----------------------AHEKNMDVGAN---------- 101
Query: 234 TVYVGNLGSEATQLDLHRHFHALGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 287
++VGNL E + L+ F A G +++ ++ RD KGF F+ +++ + A+
Sbjct: 102 -IFVGNLDPEVDEKLLYDTFSAFGV-ILQVPKIMRDVDSGTSKGFAFINFASFEASDTAL 159
Query: 288 QMGNAQSYLCGKIIKCSWGSKPTPPG-----------TASNPLPPP-------AAAPLPG 329
+ N Q +LC + I S+ K G A NPL P + PL G
Sbjct: 160 EAMNGQ-FLCNRAITVSYAFKRDSKGERHGTAAERMLAAQNPLFPKDRPHQVFSDVPL-G 217
Query: 330 LSATDILAYERQLAMSKMGGVHAALMHPQAQHPLKQ--AAIGASQAIYDGGFQNV 382
+ A LA M GVHAA+ P Q +G +Q+ Y G + V
Sbjct: 218 VPANTPLA---------MPGVHAAIAAHATGRPGYQPPPLMGMAQSGYQGQYPPV 263
Score = 35.8 bits (81), Expect = 0.19
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPV-EGCKLFRKEKSS----YGFIHYFDRRSAALAILTL 84
+VGN+ +V E LL + F+ G + + K+ R S + FI++ ++ A+ +
Sbjct: 103 FVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAM 162
Query: 85 NGRHLFGQPIKVNWAY---ASGQREDTS 109
NG+ L + I V++A+ + G+R T+
Sbjct: 163 NGQFLCNRAITVSYAFKRDSKGERHGTA 190
>PAB5_ARATH (Q05196) Polyadenylate-binding protein 5
(Poly(A)-binding protein 5) (PABP 5)
Length = 668
Score = 88.2 bits (217), Expect = 3e-17
Identities = 68/271 (25%), Positives = 122/271 (44%), Gaps = 35/271 (12%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEG---CKLFRKEKSSYGFIHYFDRRSAALAILTLNG 86
YVG++ V E L ++F PV C+ Y ++++ + A+ A+ +LN
Sbjct: 48 YVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESLNY 107
Query: 87 RHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYQSCSDARVMWD 146
+ +PI++ + SG N+F+ +L + + L+ FS + + +V D
Sbjct: 108 APIRDRPIRIMLSNRDPSTR-LSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMD 166
Query: 147 QKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSDSKSV 206
GRS+G+GFV F ++ AQ+AI+ L G L +Q+ + +++ S+S +V
Sbjct: 167 V-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRR----QDRARSESGAV 221
Query: 207 VELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALG---AGVIEE 263
P +T VYV NL E T +L + F G + V+ +
Sbjct: 222 -----------------------PSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMK 258
Query: 264 VRVQRDKGFGFVRYSTHAEAALAIQMGNAQS 294
+ + FGFV + + AA+A++ N S
Sbjct: 259 DQSGNSRSFGFVNFVSPEAAAVAVEKMNGIS 289
Score = 77.0 bits (188), Expect = 8e-14
Identities = 77/278 (27%), Positives = 113/278 (39%), Gaps = 35/278 (12%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRK---EKSSYGFIHYFDRRSAALAILTLNG 86
++ N+ + L E F+ G + CK+ YGF+ + +A AI LNG
Sbjct: 135 FIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNG 194
Query: 87 RHLFGQPIKV-NWAYASGQREDTSGHY----NIFVGDLSPEVTDATLFACFSVYQSCSDA 141
L + + V ++ + SG N++V +L E+TD L F Y S A
Sbjct: 195 MLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSA 254
Query: 142 RVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEE---K 198
VM DQ +G SR FGFV+F S + A A+ + G LG + A K + EE K
Sbjct: 255 VVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRK 313
Query: 199 QNSDSKSVVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALGA 258
+ S E GS+ +Y+ NL L F G
Sbjct: 314 FEQERISRFEKLQGSN--------------------LYLKNLDDSVNDEKLKEMFSEYGN 353
Query: 259 GVIEEVRVQR---DKGFGFVRYSTHAEAALAIQMGNAQ 293
+V + +GFGFV YS EA LA++ N +
Sbjct: 354 VTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGK 391
Score = 67.0 bits (162), Expect = 8e-11
Identities = 43/172 (25%), Positives = 83/172 (48%), Gaps = 19/172 (11%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKS---SYGFIHYFDRRSAALAILTLNG 86
YV N+ ++T+ L++ F G + + + + S+GF+++ +AA+A+ +NG
Sbjct: 228 YVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNG 287
Query: 87 RHLFGQPIKVNWAYASGQREDTSGHY---------------NIFVGDLSPEVTDATLFAC 131
L + V A RE+ N+++ +L V D L
Sbjct: 288 ISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEM 347
Query: 132 FSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQI 183
FS Y + + +VM + + G SRGFGFV++ + ++A A+ ++ GK +G + +
Sbjct: 348 FSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPL 398
Score = 40.4 bits (93), Expect = 0.008
Identities = 22/80 (27%), Positives = 41/80 (50%), Gaps = 3/80 (3%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKS---SYGFIHYFDRRSAALAILTLNG 86
Y+ N+ V + L+E+F+ G V CK+ + +GF+ Y + A LA+ +NG
Sbjct: 331 YLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNG 390
Query: 87 RHLFGQPIKVNWAYASGQRE 106
+ + +P+ V A +R+
Sbjct: 391 KMIGRKPLYVALAQRKEERQ 410
>SP49_SCHPO (O14102) Spliceosome-associated protein 49
Length = 335
Score = 82.4 bits (202), Expect = 2e-15
Identities = 53/168 (31%), Positives = 87/168 (51%), Gaps = 5/168 (2%)
Query: 30 YVGNVHTQVTEPLLQEVFAGTGPVEGCKL----FRKEKSSYGFIHYFDRRSAALAILTLN 85
Y+GN+ +VT+ +L E+ GPV + R + +GF + + A LN
Sbjct: 14 YLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQILN 73
Query: 86 GRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYQSCSDARVMW 145
LFG+PI+VN A + + +T N+FVG+L P V + L+ FS A +
Sbjct: 74 QVKLFGKPIRVNRA-SQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVA 132
Query: 146 DQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAG 193
+ GRS+G+GFVS+ S + A +AI + ++L ++ I ++A K G
Sbjct: 133 RDENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREG 180
Score = 55.1 bits (131), Expect = 3e-07
Identities = 57/209 (27%), Positives = 86/209 (40%), Gaps = 40/209 (19%)
Query: 105 REDTSGHYNIFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQ 164
RED + I++G+L +VTD+ LF + + D+ GFGF F +Q
Sbjct: 4 REDRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQ 63
Query: 165 DAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSDSKSVVELTNGSSEDGKEISSND 224
D + A L L + IR N A++ G V G++
Sbjct: 64 DVEYACQILNQVKLFGKPIRVNRASQDRG-------------VNTLIGAN---------- 100
Query: 225 VPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEEVRVQRD-----KGFGFVRYST 279
++VGNL + L+ F ALG +++ +V RD KG+GFV Y +
Sbjct: 101 ----------LFVGNLDPLVDERVLYDTFSALGQ-LVKAPQVARDENGRSKGYGFVSYDS 149
Query: 280 HAEAALAIQMGNAQSYLCGKIIKCSWGSK 308
A AI+ N Q +L K I S+ K
Sbjct: 150 FETADAAIEAMNNQ-FLMNKPITVSYAFK 177
Score = 34.3 bits (77), Expect = 0.56
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 225 VPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEEVRVQRDK------GFGFVRYS 278
+ E+ Q T+Y+GNL + T L L AG + + + RD+ GFGF +
Sbjct: 3 IREDRNQDATIYLGNLDEKVTDSILFE--LCLQAGPVVNIHIPRDRVRNSHNGFGFCEFL 60
Query: 279 THAEAALAIQMGNAQSYLCGKIIKCSWGSK 308
+ A Q+ N Q L GK I+ + S+
Sbjct: 61 HEQDVEYACQILN-QVKLFGKPIRVNRASQ 89
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.317 0.132 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,471,616
Number of Sequences: 164201
Number of extensions: 2014032
Number of successful extensions: 9637
Number of sequences better than 10.0: 329
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 8305
Number of HSP's gapped (non-prelim): 990
length of query: 392
length of database: 59,974,054
effective HSP length: 112
effective length of query: 280
effective length of database: 41,583,542
effective search space: 11643391760
effective search space used: 11643391760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)
Medicago: description of AC146708.15