BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146693.3 - phase: 0 /pseudo
         (634 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AMPH_CHICK (P50478) Amphiphysin                                        36  0.27
AMPH_RAT (O08838) Amphiphysin                                          35  0.78
AMPH_MOUSE (Q7TQF7) Amphiphysin                                        34  1.3
EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)     33  1.7
AMPH_HUMAN (P49418) Amphiphysin                                        33  2.3
RXRB_RAT (P49743) Retinoic acid receptor RXR-beta (Retinoid X re...    32  5.1

>AMPH_CHICK (P50478) Amphiphysin
          Length = 682

 Score = 36.2 bits (82), Expect = 0.27
 Identities = 21/55 (38%), Positives = 27/55 (48%), Gaps = 7/55 (12%)

Query: 318 PNRISERLSPNSLPRLILSPHTPKCLRPKSPKWPNKWPPLLKH*ESFPVNPKQTP 372
           P  +S   SP + P  +L+P +P   RPKSP    K PP+       P  PK TP
Sbjct: 264 PEEVSPLPSPTASPNHMLAPASPAPARPKSPTQLRKGPPV-------PPLPKLTP 311


>AMPH_RAT (O08838) Amphiphysin
          Length = 683

 Score = 34.7 bits (78), Expect = 0.78
 Identities = 20/55 (36%), Positives = 26/55 (46%), Gaps = 7/55 (12%)

Query: 318 PNRISERLSPNSLPRLILSPHTPKCLRPKSPKWPNKWPPLLKH*ESFPVNPKQTP 372
           P   S   SP + P   L+P +P  +RP+SP    K PP+       P  PK TP
Sbjct: 264 PEEASPLPSPTASPNHTLAPASPAPVRPRSPSQTRKGPPV-------PPLPKVTP 311


>AMPH_MOUSE (Q7TQF7) Amphiphysin
          Length = 686

 Score = 33.9 bits (76), Expect = 1.3
 Identities = 20/55 (36%), Positives = 26/55 (46%), Gaps = 7/55 (12%)

Query: 318 PNRISERLSPNSLPRLILSPHTPKCLRPKSPKWPNKWPPLLKH*ESFPVNPKQTP 372
           P   S   SP + P   L+P +P  +RP+SP    K PP+       P  PK TP
Sbjct: 264 PEEPSPLPSPTASPNHTLAPASPAPVRPRSPSQTRKGPPV-------PPLPKVTP 311


>EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)
          Length = 283

 Score = 33.5 bits (75), Expect = 1.7
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 311 KSPRTEKPNRISERLSPNSLPRLILSPHTPKCLRPKSPKW-PNKWPPLLKH*ESFPVNPK 369
           K P T+ P        P S P   +   +PK  +P  P + P   PP  K   S P +PK
Sbjct: 173 KPPVTKPPTHTPSPKPPTSKPTPPVYTPSPKPPKPSPPTYTPTPKPPATKPPTSTPTHPK 232

Query: 370 QTP 372
            TP
Sbjct: 233 PTP 235


>AMPH_HUMAN (P49418) Amphiphysin
          Length = 695

 Score = 33.1 bits (74), Expect = 2.3
 Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 7/55 (12%)

Query: 318 PNRISERLSPNSLPRLILSPHTPKCLRPKSPKWPNKWPPLLKH*ESFPVNPKQTP 372
           P   S   SP + P   L+P +P   RP+SP    K PP+       P  PK TP
Sbjct: 264 PEEPSPLPSPTASPNHTLAPASPAPARPRSPSQTRKGPPV-------PPLPKVTP 311


>RXRB_RAT (P49743) Retinoic acid receptor RXR-beta (Retinoid X
           receptor beta) (Nuclear receptor coregulator 1)
           (Fragment)
          Length = 458

 Score = 32.0 bits (71), Expect = 5.1
 Identities = 30/102 (29%), Positives = 43/102 (41%), Gaps = 14/102 (13%)

Query: 311 KSPRTEKPNRISERLSPNSLPRLILSPHTPKCLRPKSPKWPNKWP-PLLKH*ESFP---- 365
           +SP +  PN +S+ + P+S P     PHTP    P  P  P   P P++      P    
Sbjct: 16  RSPDSSSPNPLSQGIPPSSPPG---PPHTPSAPPPPMPPPPLGSPFPVISSSMGSPGLPP 72

Query: 366 ------VNPKQTPKLMSTPFLMGVVSWKGQLLKPKELRERVL 401
                   P  +P++ ST  L G  S   + +KP  L  R L
Sbjct: 73  PAPPGFSGPVSSPQINSTVSLPGGGSGPPEDVKPPVLGVRGL 114


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.364    0.164    0.631 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,814,952
Number of Sequences: 164201
Number of extensions: 2105494
Number of successful extensions: 9857
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9847
Number of HSP's gapped (non-prelim): 10
length of query: 634
length of database: 59,974,054
effective HSP length: 116
effective length of query: 518
effective length of database: 40,926,738
effective search space: 21200050284
effective search space used: 21200050284
T: 11
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.5 bits)
S2: 69 (31.2 bits)