BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146664.12 + phase: 0 /pseudo
(410 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YJ23_SCHPO (Q9USJ3) Hypothetical protein C4B3.03c in chromosome III 135 2e-31
YFJD_ECOLI (P37908) Hypothetical UPF0053 protein yfjD 46 2e-04
YC54_SYNY3 (P74078) Hypothetical UPF0053 protein sll1254 41 0.006
PSTC_PASMU (Q9CNJ5) Phosphate transport system permease protein ... 35 0.35
YUGS_BACSU (O05241) Hypothetical UPF0053 protein yugS 35 0.46
YHDT_BACSU (O07589) Hypothetical UPF0053 protein yhdT 33 1.3
YB89_YEAST (P38140) Putative 60.3 kDa transcriptional regulatory... 32 3.0
RPA1_YEAST (P10964) DNA-directed RNA polymerase I 190 kDa polype... 32 3.0
AB11_MOUSE (Q9QY30) Bile salt export pump (ATP-binding cassette,... 32 3.0
YOAA_ECOLI (P76257) Probable ATP-dependent helicase yoaA 32 3.9
YHDP_BACSU (O07585) Hypothetical UPF0053 protein yhdP 32 3.9
RPO1_ASFB7 (P42486) DNA-directed RNA polymerase subunit 1 (EC 2.... 31 5.0
CTRO_MOUSE (P49025) Citron protein (Rho-interacting, serine/thre... 31 5.0
YRKA_BACSU (P54428) Hypothetical UPF0053 protein yrkA 31 6.6
YQHB_BACSU (P54505) Hypothetical UPF0053 protein yqhB 31 6.6
RPA1_SCHPO (P15398) DNA-directed RNA polymerase I 190 kDa polype... 30 8.6
NRFA_PASMU (Q9CPL4) Cytochrome c-552 precursor (EC 1.7.2.2) (Amm... 30 8.6
CTRO_HUMAN (O14578) Citron protein (Rho-interacting, serine/thre... 30 8.6
CITN_KLEPN (P31602) Citrate-sodium symport (Citrate transporter)... 30 8.6
CCSA_MESVI (Q9MUM3) Cytochrome c biogenesis protein ccsA 30 8.6
>YJ23_SCHPO (Q9USJ3) Hypothetical protein C4B3.03c in chromosome III
Length = 679
Score = 135 bits (340), Expect = 2e-31
Identities = 90/300 (30%), Positives = 153/300 (51%), Gaps = 36/300 (12%)
Query: 18 FWVLALLCWVFMFFAAISSALALGLLSFSQVDLEVLVKAGQPHIQKNAAKIMSIVKN-EH 76
+W+ ++ V + + + L +GL+ + L+VL ++G + +A K++ +++ +H
Sbjct: 62 YWMKLIISAVLILLGGVFAGLTIGLMGCDDLHLQVLEQSGDASERVHARKVLKLLRRGKH 121
Query: 77 LVLCTLLMAKSLALEGVSVLMEKMFPE-WVAVLLATALISIIAEVIPQALNSRYGLRFGA 135
VL TLL+ + E + ++ + + W AVL++TA+I I EVIPQA RYGL GA
Sbjct: 122 WVLVTLLLGNVIVNETLPIVFDSIIGGGWPAVLISTAMIVIFGEVIPQATCVRYGLSIGA 181
Query: 136 TMSPFVRVLLLLFFPFAYPVSKLLDCLLGKGHTALLGREELKTLVNLHANEAGKGGELTL 195
+ P V ++ L +P AYP + +LD LG+ + + + LKTLV LH + +L
Sbjct: 182 KLEPIVLFMMYLLWPIAYPTALILDACLGESQSTMYKKSGLKTLVTLHRDLG--IDKLNQ 239
Query: 196 HETTIIAGALDLTMKTAKDAMTPLSETFSLDINSKLD---MSRI*CSAVRKMK-HQ---- 247
E TII LDL K A+ MTP+ + F+L ++ LD + I C+ ++ H+
Sbjct: 240 DEVTIITAVLDLREKHAESIMTPIEDVFTLPMDRILDEDLIGEIICAGYSRIPVHKPGFP 299
Query: 248 -------LSL*L*GEFPGENWPL-----------------YDILNQFKKGQSHMAVVLKS 283
L+ L G P + WP+ D+LN ++G+SHM ++ S
Sbjct: 300 HDFIGMLLTKTLIGYDPDDKWPVGKFALATLPQTWPNTSCLDLLNYCQEGKSHMILISNS 359
>YFJD_ECOLI (P37908) Hypothetical UPF0053 protein yfjD
Length = 420
Score = 46.2 bits (108), Expect = 2e-04
Identities = 44/222 (19%), Positives = 100/222 (44%), Gaps = 24/222 (10%)
Query: 21 LALLCWVFMFFAAISSALALGLLSFSQVDLEVLVKAGQPHIQKNAAKIMSIVKNEHLVLC 80
+ ++ + + +A S G+++ ++ L + K G ++A ++ +++ ++
Sbjct: 1 MIIILIIMVVISAYFSGSETGMMTLNRYRLRHMAKQGN----RSAKRVEKLLRKPDRLIS 56
Query: 81 TLLMAKSL-----ALEGVSVLMEKMFPEWVAVL--LATALISIIAEVIPQALNSRYGLRF 133
+L+ +L + G V M VA+ + T ++ + AEV+P+ + + Y +
Sbjct: 57 LVLIGNNLVNILASALGTIVGMRLYGDAGVAIATGVLTFVVLVFAEVLPKTIAALYPEKV 116
Query: 134 GATMSPFVRVLLLLFFPFAY---PVSKLLDCLLGKGHTAL----LGREELKTLVNLHANE 186
S + L +L P + ++++L ++G + L +EEL+T+V+ ++
Sbjct: 117 AYPSSFLLAPLQILMMPLVWLLNAITRMLMRMMGIKTDIVVSGSLSKEELRTIVHESRSQ 176
Query: 187 AGKGGELTLHETTIIAGALDLTMKTAKDAMTPLSETFSLDIN 228
+ + ++ LDL T D M P SE +DIN
Sbjct: 177 ISRRNQ------DMLLSVLDLEKMTVDDIMVPRSEIIGIDIN 212
>YC54_SYNY3 (P74078) Hypothetical UPF0053 protein sll1254
Length = 346
Score = 40.8 bits (94), Expect = 0.006
Identities = 31/117 (26%), Positives = 47/117 (39%), Gaps = 6/117 (5%)
Query: 104 WVAVL--LATALISIIAEVIPQALNSRYGLRFGATMSPFVRVLLLLFFPFAYPVSKLLDC 161
W+ V + T LI + E+IP+ L RY ++ VR L L+F P + + ++ +
Sbjct: 88 WMGVFSGILTLLIIVFGEIIPKTLGERYATNIALLIAIPVRFLTLIFTPLVWLIEQITNP 147
Query: 162 LLGKGHTALLGREELKTLVNLHANEAGKGGELTLHETTIIAGALDLTMKTAKDAMTP 218
E+K L L E G + E +I L A D MTP
Sbjct: 148 FTHGKRVPSTNEAEIKFLATLGYKE----GVIEGDEEQMIQRVFQLNDLMAVDLMTP 200
>PSTC_PASMU (Q9CNJ5) Phosphate transport system permease protein
pstC
Length = 320
Score = 35.0 bits (79), Expect = 0.35
Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 26 WVFMFFAAISSALALGLL-SFSQVDLEVLVKAGQPHIQKNAAKIMSIVKNEHLVLCTLLM 84
+VF+ AA+ ++L G SFS L +Q++ I+ IV L++
Sbjct: 32 FVFLLLAAVMTSLVFGSWDSFSTFGFSFLWHNDWNPVQESYGAIIPIVGTLITSFLALII 91
Query: 85 AKSLALEGVSVLMEKMFPEWVAVLLATALISIIAEVIPQALNSRYGL 131
A ++ G+++ + ++ PEW+ + TA+ + A IP + +GL
Sbjct: 92 AVPISF-GIAIFLTELAPEWLRRPVGTAIEMLAA--IPSIIYGMWGL 135
>YUGS_BACSU (O05241) Hypothetical UPF0053 protein yugS
Length = 434
Score = 34.7 bits (78), Expect = 0.46
Identities = 29/139 (20%), Positives = 63/139 (44%), Gaps = 19/139 (13%)
Query: 105 VAVLLATALISIIAEVIPQALNSRYGLRFGATMSPFVRVLLLLFFPFAYPVSKLLDC--- 161
VA ++ T L ++ E+ P+ ++ ++ +S ++ L+ F+ YP K L+
Sbjct: 111 VAFIIVTFLHVVMGELAPKTVS----IQKAEAVSLWIAKPLIWFYKITYPFIKALNGSAS 166
Query: 162 ----LLG----KGHTALLGREELKTLVNLHANEAGKGGELTLHETTIIAGALDLTMKTAK 213
L G K H ++ EEL+ +++ E+ + GE+ E + + + A+
Sbjct: 167 FLVKLFGFHSVKEHQVVISEEELRLILS----ESYEKGEINQSEFRYVNKIFEFDNRVAR 222
Query: 214 DAMTPLSETFSLDINSKLD 232
+ M P +E + + L+
Sbjct: 223 EIMIPRTEIAVISLEQSLE 241
>YHDT_BACSU (O07589) Hypothetical UPF0053 protein yhdT
Length = 461
Score = 33.1 bits (74), Expect = 1.3
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 11/124 (8%)
Query: 105 VAVLLATALISIIAEVIPQALNSRYGLRFGATMSPFVRVLLLLFFPFAYPVSKLLDCLLG 164
VA L T L ++ E+ P+ + + + ++ +R+ LL FPF + ++ L G
Sbjct: 107 VAYGLITFLHVVVGELAPKTVAIQKAEQLTLLIAGPLRLFYLLLFPFIWILNGSARLLCG 166
Query: 165 -------KGHTALLGREELKTLVNLHANEAGKGGELTLHETTIIAGALDLTMKTAKDAMT 217
H EEL+ L++ E+ K GE+ E + + + AK+ M
Sbjct: 167 MFGLKPASEHDGSHSEEELRMLLS----ESLKNGEINPSEYKYVNKIFEFDNRIAKEIMI 222
Query: 218 PLSE 221
P E
Sbjct: 223 PRKE 226
>YB89_YEAST (P38140) Putative 60.3 kDa transcriptional regulatory
protein in PRP5-THI2 intergenic region
Length = 529
Score = 32.0 bits (71), Expect = 3.0
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 290 AATNTEGFGPFLPHDYISISTEASNWQSEGSEYYSATLKNAMLQESKDSDPLHRSKQHDT 349
+A N+ F LP D S++ NW S ++YY L + + + + PL R K H
Sbjct: 255 SADNSLNFKRLLPRDPSEKSSQI-NWDSSINQYY---LNSETVTFPELAIPLKRRKNHLV 310
Query: 350 SISLEN 355
S+SLE+
Sbjct: 311 SVSLES 316
>RPA1_YEAST (P10964) DNA-directed RNA polymerase I 190 kDa polypeptide
(EC 2.7.7.6) (A190)
Length = 1664
Score = 32.0 bits (71), Expect = 3.0
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 328 KNAMLQESKDSDPLHRSKQHDTSISLENMESLLGEEEVVGIITLEDVMEELLQVSLTSYH 387
KN+ L +S D K+ + L+ M SL+ E VGII + V E Q++L ++H
Sbjct: 1150 KNSKLFKSSDGV---NEKKFRALMQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFH 1206
>AB11_MOUSE (Q9QY30) Bile salt export pump (ATP-binding cassette,
sub-family B, member 11) (Sister of P-glycoprotein)
Length = 1321
Score = 32.0 bits (71), Expect = 3.0
Identities = 18/41 (43%), Positives = 26/41 (62%), Gaps = 1/41 (2%)
Query: 19 WVLALLCWVFMFFAAISSALALGLLS-FSQVDLEVLVKAGQ 58
W L+L+ VF F A+S A+ +L+ F+ D E+L KAGQ
Sbjct: 898 WKLSLVISVFFPFLALSGAVQTKMLTGFASQDKEILEKAGQ 938
>YOAA_ECOLI (P76257) Probable ATP-dependent helicase yoaA
Length = 636
Score = 31.6 bits (70), Expect = 3.9
Identities = 23/96 (23%), Positives = 40/96 (40%), Gaps = 4/96 (4%)
Query: 258 GENWPLYD---ILNQFKKGQSHMAVVLKSKENIRTAATNTEGFGPFLPHDYISISTEASN 314
G + P+Y ++ KK VV+ + GFG +P + I EA
Sbjct: 170 GSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQ 229
Query: 315 WQSEGSEYYSATLKNAMLQE-SKDSDPLHRSKQHDT 349
S+Y+ +L + L + +KD +R++ DT
Sbjct: 230 LPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDT 265
>YHDP_BACSU (O07585) Hypothetical UPF0053 protein yhdP
Length = 444
Score = 31.6 bits (70), Expect = 3.9
Identities = 52/238 (21%), Positives = 102/238 (42%), Gaps = 36/238 (15%)
Query: 20 VLALLCWVFMFFAAISSALALGLLSFSQVDLEVLVKAGQPHIQKNAAKIMSIVKNEHLVL 79
++A+L + FF A S A+ + S++D +++ + + I A K ++ +E+L
Sbjct: 8 LVAVLIALTAFFVA--SEFAIIRIRGSRID-QLIAEGNKAAI---AVKKVTTHLDEYLSA 61
Query: 80 CTL---LMAKSLALEGVSVLMEKMFPEWVAV------------LLATALISIIAEVIPQA 124
C L L + L + G S + + P +V + + A A+I+ + V+ +
Sbjct: 62 CQLGITLTSIGLGVLGESTIERLLHPLFVQMNVPGSLSHVISFIFAYAIITFLHVVVGEL 121
Query: 125 LNSRYGLRFGATMSPFVRVLLLLFFPFAYPVSKLLDC---LLGKG--------HTALLGR 173
++ +S L+ F+ A+P LL+ LL K +
Sbjct: 122 APKTVAIQKAEAVSMLFAKPLIWFYRIAFPFIWLLNNSARLLTKAFGLETVSENELAHSE 181
Query: 174 EELKTLVNLHANEAGKGGELTLHETTIIAGALDLTMKTAKDAMTPLSETFSLDINSKL 231
EEL+ +++ E+ K GE+ E + + + AK+ M P +E SL + K+
Sbjct: 182 EELRIILS----ESYKSGEINQSEFKYVNKIFEFDDRLAKEIMIPRTEIVSLPHDIKI 235
>RPO1_ASFB7 (P42486) DNA-directed RNA polymerase subunit 1 (EC
2.7.7.6)
Length = 1450
Score = 31.2 bits (69), Expect = 5.0
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 351 ISLENMESLLGEEEVVGIITLEDVMEELLQVSLTSYHSTI 390
I L+ +SL+ E VGI+ + V E L Q L S+H ++
Sbjct: 1026 IRLQYTQSLINYGEAVGILAAQSVSEPLTQYMLDSHHRSV 1065
>CTRO_MOUSE (P49025) Citron protein (Rho-interacting,
serine/threonine kinase 21)
Length = 1597
Score = 31.2 bits (69), Expect = 5.0
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 157 KLLDCLLGKGHTALLGREELKTLVNLHANEAGKGGELTLHETTIIAGALDLTMKTAKDAM 216
K+LD + K L +E L+ ++ H EA + G++ L E + A+D +++ + +
Sbjct: 309 KVLDNQIKKD---LADKESLENMMQRHEEEAHEKGKI-LSEQKAMINAMDSKIRSLEQRI 364
Query: 217 TPLSETFSLDINSKLDMSR 235
LSE L NS L R
Sbjct: 365 VELSEANKLAANSSLFTQR 383
>YRKA_BACSU (P54428) Hypothetical UPF0053 protein yrkA
Length = 434
Score = 30.8 bits (68), Expect = 6.6
Identities = 26/128 (20%), Positives = 54/128 (41%), Gaps = 11/128 (8%)
Query: 105 VAVLLATALISIIAEVIPQALNSRYGLRFGATMSPFVRVLLLLFFPFAYPVSKLLDCLLG 164
+A ++AT L ++ E+ P+ L + + + + FPF + ++ ++G
Sbjct: 106 IAFVMATFLHVVVGELAPKTLAIQKAETITLLTAKPIIWFYRILFPFIWFLNGSARFIVG 165
Query: 165 -------KGHTALLGREELKTLVNLHANEAGKGGELTLHETTIIAGALDLTMKTAKDAMT 217
H EEL+ L++ E+ K GE+ +E + + + AK+ M
Sbjct: 166 LFGLKPASEHELAHSEEELRILLS----ESYKSGEINQNELKYVNNIFEFDERIAKEIMI 221
Query: 218 PLSETFSL 225
P E ++
Sbjct: 222 PRREIVAI 229
>YQHB_BACSU (P54505) Hypothetical UPF0053 protein yqhB
Length = 442
Score = 30.8 bits (68), Expect = 6.6
Identities = 31/135 (22%), Positives = 56/135 (40%), Gaps = 19/135 (14%)
Query: 105 VAVLLATALISIIAEVIPQALNSRYG----LRFGATMSPFVRVLLLLFFPFAYPVSKLLD 160
+A L+ T L +I E+ P++ + L F + F +++ FPF + ++
Sbjct: 115 IAFLVVTYLNVVIGELAPKSFAIQKAESITLLFAKPLIWFYKIM----FPFIWLLNHSAR 170
Query: 161 CLLG-------KGHTALLGREELKTLVNLHANEAGKGGELTLHETTIIAGALDLTMKTAK 213
+ G H EEL+ L+ E+ K GE+ E + + AK
Sbjct: 171 LITGVFGLKPASEHELAYTEEELRVLLA----ESYKSGEIRKSELKYMNNIFTFDKRMAK 226
Query: 214 DAMTPLSETFSLDIN 228
+ M P +E SL ++
Sbjct: 227 EIMVPRNEMVSLSLD 241
>RPA1_SCHPO (P15398) DNA-directed RNA polymerase I 190 kDa polypeptide
(EC 2.7.7.6)
Length = 1689
Score = 30.4 bits (67), Expect = 8.6
Identities = 16/58 (27%), Positives = 29/58 (49%)
Query: 330 AMLQESKDSDPLHRSKQHDTSISLENMESLLGEEEVVGIITLEDVMEELLQVSLTSYH 387
A +ESK D L + + L +SL+ E VG++ + + E Q++L ++H
Sbjct: 1158 ASKKESKLDDSLLNESKFKALMQLRYQQSLVDPGESVGVLASQSIGEPSTQMTLNTFH 1215
>NRFA_PASMU (Q9CPL4) Cytochrome c-552 precursor (EC 1.7.2.2)
(Ammonia-forming cytochrome c nitrite reductase)
(Cytochrome c nitrite reductase)
Length = 510
Score = 30.4 bits (67), Expect = 8.6
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 261 WPLYDILNQFKKGQSHMAVVLKSKENIRTAATNTEGFGPFLPHDYISISTEASNWQSEGS 320
W Y +KK + H V +E +RTAA T GP + S + +E
Sbjct: 109 WAGYAFAKDYKKPRGHFYAVTDVREILRTAAPMTPDAGPMPMACWSCKSPDVPRLIAERG 168
Query: 321 E--YYSATLKNAMLQESKDSDPLHRSKQHDTS 350
E Y+ AT + S+ +P+ + HDT+
Sbjct: 169 EAGYFGATWASG---GSEVVNPIGCADCHDTT 197
>CTRO_HUMAN (O14578) Citron protein (Rho-interacting,
serine/threonine kinase 21) (Fragment)
Length = 1286
Score = 30.4 bits (67), Expect = 8.6
Identities = 19/66 (28%), Positives = 33/66 (49%), Gaps = 1/66 (1%)
Query: 170 LLGREELKTLVNLHANEAGKGGELTLHETTIIAGALDLTMKTAKDAMTPLSETFSLDINS 229
L +E L+ ++ H EA + G++ L E + A+D +++ + + LSE L NS
Sbjct: 10 LADKETLENMMQRHEEEAHEKGKI-LSEQKAMINAMDSKIRSLEQRIVELSEANKLAANS 68
Query: 230 KLDMSR 235
L R
Sbjct: 69 SLFTQR 74
>CITN_KLEPN (P31602) Citrate-sodium symport (Citrate transporter)
(Citrate carrier protein)
Length = 446
Score = 30.4 bits (67), Expect = 8.6
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 151 FAYPVSKLLDCLLGKGHTALLGREELKTLVNLHANEAGKGGELTLHETTI 200
FA + +LD ++GK HT L G EL + E K G++T ET +
Sbjct: 222 FAIVFAAVLD-IIGKKHTWLSGEGELVRKASFKVEEDEKTGQITHRETAV 270
>CCSA_MESVI (Q9MUM3) Cytochrome c biogenesis protein ccsA
Length = 305
Score = 30.4 bits (67), Expect = 8.6
Identities = 22/81 (27%), Positives = 39/81 (47%), Gaps = 6/81 (7%)
Query: 16 NHFWVLALLCWVFMFF-AAISSALALGLLSFSQVDLEVLVKAGQ----PHIQKNAAKIMS 70
N + L LCW F FF I + + + F V + +LV A P +++ ++
Sbjct: 70 NMYESLMFLCWCFTFFHLLIEKYIQINFIGFITVPIAMLVNAFATFFLPLDMQHSTPLVP 129
Query: 71 IVKNEHLVL-CTLLMAKSLAL 90
+K+ L++ T++MA AL
Sbjct: 130 ALKSNWLIMHVTIMMASYAAL 150
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.324 0.137 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,029,017
Number of Sequences: 164201
Number of extensions: 1616344
Number of successful extensions: 5886
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 5871
Number of HSP's gapped (non-prelim): 36
length of query: 410
length of database: 59,974,054
effective HSP length: 113
effective length of query: 297
effective length of database: 41,419,341
effective search space: 12301544277
effective search space used: 12301544277
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 67 (30.4 bits)
Medicago: description of AC146664.12