BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146651.4 - phase: 0
(320 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y630_RICPR (Q9ZCT3) Hypothetical UPF0118 protein RP630 42 0.003
SOTB_PSESM (Q888L8) Probable sugar efflux transporter 38 0.029
YYBC_BACSU (P37501) Hypothetical protein yybC 37 0.066
NUON_BUCBP (Q89AT4) NADH-quinone oxidoreductase chain N (EC 1.6.... 37 0.066
Y233_METJA (Q57685) Hypothetical protein MJ0233 37 0.086
COX3_LEITA (P14546) Cytochrome c oxidase polypeptide III (EC 1.9... 35 0.19
YS96_CAEEL (Q09965) Putative G protein-coupled receptor B0244.6 35 0.25
XK_HUMAN (P51811) Membrane transport protein XK (Kx antigen) 35 0.25
MRPA_BACPF (Q9RGZ5) Na(+)/H(+) antiporter subunit A (Multiple re... 35 0.25
NU5M_CERSI (O03205) NADH-ubiquinone oxidoreductase chain 5 (EC 1... 35 0.33
MSBA_RALSO (Q8XXB6) Lipid A export ATP-binding/permease protein ... 34 0.43
CYA1_DROME (P32870) Ca(2+)/calmodulin-responsive adenylate cycla... 34 0.56
NU2M_ASCSU (P24877) NADH-ubiquinone oxidoreductase chain 2 (EC 1... 33 0.73
CIN4_RAT (P15390) Sodium channel protein type IV alpha subunit (... 33 0.73
NU5C_SORBI (Q33066) NAD(P)H-quinone oxidoreductase chain 5, chlo... 33 0.95
NU5C_MAIZE (P46620) NAD(P)H-quinone oxidoreductase chain 5, chlo... 33 0.95
CYB_SAISC (Q35930) Cytochrome b 33 0.95
CYB_PYTRE (O48277) Cytochrome b 33 0.95
CYB_LEMCA (Q34876) Cytochrome b 33 0.95
NUOM_RHOCA (P50974) NADH-quinone oxidoreductase chain M (EC 1.6.... 33 1.2
>Y630_RICPR (Q9ZCT3) Hypothetical UPF0118 protein RP630
Length = 351
Score = 41.6 bits (96), Expect = 0.003
Identities = 50/253 (19%), Positives = 107/253 (41%), Gaps = 17/253 (6%)
Query: 31 FYLITLILIFPLSFAILAHSL---FTHPLISHIESPFTDPAQTSHDWTLLLIIQFFYLIF 87
F+L+ L L F F ++ ++ F +IS++ P ++ + + L YLIF
Sbjct: 7 FWLVFLTL-FISGFMLITDTIKPFFIAFIISYLLQPAIYFIESKLEISNKLASSIIYLIF 65
Query: 88 LFAFSLLSTAAVVFTVASLYT--SKPVSFSNTISA--IPNVFKRLFITFLWVT--LLMFC 141
L F L+ T + ++T + + N + + +P + +++ + +
Sbjct: 66 LSIFFLIFTILIPIIYGQIFTFINNIPKYKNYLQSEILPPIMGKIYSIEPDIADKIKHSL 125
Query: 142 YNFVFILCLVLMVIAVDTDNSVLLFFSVVLIFVLFLVVHVYITALWHLASVVSVLEPLYG 201
+F+ + +L IA + ++ ++ ++F+L ++ Y W +++ +E L
Sbjct: 126 SDFINSIFTILGSIANNFWRYTIITINIFVLFLLIPIILFYFLRDWD--KIITNMESLLP 183
Query: 202 FAAMKKSYELLKGRVRYASLLVCGYLFLCAVISGMFSVIVVHGGDGYDVFSRIFIGGFLV 261
K E+L S + G L +C ++S +S+ G + G L
Sbjct: 184 IKTRPKILEILSAINNLLSSYIRGQLNICLLLSTYYSIAFTLIG-----IDLALLLGILT 238
Query: 262 GVLVIVNLVGLLV 274
G LVI+ L+G +
Sbjct: 239 GFLVIIPLLGTFI 251
>SOTB_PSESM (Q888L8) Probable sugar efflux transporter
Length = 407
Score = 38.1 bits (87), Expect = 0.029
Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 27/226 (11%)
Query: 97 AAVVFTVASLYTSKPVSFSNTISAIPNVFKR------LFITFLWVTLLMFCYNFVFILCL 150
A VVF +A P S ++ ++P +FKR +T + VT Y+++
Sbjct: 183 ALVVFLLARALPLLPSQNSGSLRSLPILFKRPRLMAIYLLTAIVVTAHFTAYSYIEPFTQ 242
Query: 151 VLMVIAVDTDNSVLLFFSVV-----LIFVLF---LVVHVYITALWHLASVVSVLEPLYGF 202
+ ++ + +LL F ++F LF + ITA+ LA + +L PL G
Sbjct: 243 TVSRLSGEMTTILLLVFGGAGIMGSIVFSLFSDRFPNGLLITAIGTLAVCLLMLLPLSGD 302
Query: 203 AAMKKSYELLKG----------RVRYASLLVCGYLFLCAVISGMFSVIVVHGG-DGYDVF 251
A M + ++ G + R SL A+ SG+F++ + G G V
Sbjct: 303 ATMLGTLTVVWGMAIMCFGLLLQARVLSLAPDATDVAMALFSGIFNIGIGGGALLGSVVS 362
Query: 252 SRIFIGGF-LVGVLVIVNLVGLLVQSVFYYVCKSYHHQEIDKSALH 296
S + + +VG L+ + +GL+ + F + K+ H E+ A H
Sbjct: 363 SHLGVANVGIVGGLLALGGLGLICYTTFLF-GKTQPHAEMQADAKH 407
>YYBC_BACSU (P37501) Hypothetical protein yybC
Length = 159
Score = 37.0 bits (84), Expect = 0.066
Identities = 34/145 (23%), Positives = 73/145 (49%), Gaps = 14/145 (9%)
Query: 138 LMFCYNFVFILCLVLMVI-AVDTDNSVLLFFSVVLIFVLFLVVHVYITALWHLASVVSVL 196
+M C+ V ++ + +I D S++ F +V+ F++ L++ + + LA ++
Sbjct: 13 VMMCFGMVCVMSIYNAIINRAIYDFSLMTVFEMVIGFMIALLLDLLLVG--PLAKKIAFR 70
Query: 197 EPLYGFAAMKKSYELLKGRVRYASLLVCGYLFLCAVISGMFSVIVVHGGDGYDVFS---R 253
P F KK Y +L ++ +V G + LC + G+ + ++ +G +G +FS
Sbjct: 71 MP---FDKTKKIYVILA----MSTCMVIG-MVLCMSVFGLVTAVLANGLNGDSLFSAYLM 122
Query: 254 IFIGGFLVGVLVIVNLVGLLVQSVF 278
I + F++ + + ++G LV+ VF
Sbjct: 123 IVLKNFILAYPLQLLIMGPLVRGVF 147
>NUON_BUCBP (Q89AT4) NADH-quinone oxidoreductase chain N (EC
1.6.99.5) (NADH dehydrogenase I, chain N) (NDH-1, chain
N)
Length = 494
Score = 37.0 bits (84), Expect = 0.066
Identities = 38/160 (23%), Positives = 71/160 (43%), Gaps = 23/160 (14%)
Query: 94 LSTAAVVFTVASLYT-SKPVSFSNTI---SAIPNVFKRLFITFLWVTLLMFCYNFVFIL- 148
+ + ++F +A +Y+ S + FS+ I + I F I F V+L + +F L
Sbjct: 166 IMSTLLLFGIALIYSVSGSLEFSSIIYELTMITKSFHNAIILFFGVSLFIIACSFKLSLF 225
Query: 149 --------------CLVLMVIAVDTDNSVLLFFSVVLIFVLFLVVHVYITALWHLASVVS 194
LM+ + T + +F + IF++ H+ ++L S++S
Sbjct: 226 PFHIWTPDVYQGMSSEALMIFS--TSVKIAIFSVLFKIFIVLSYFHIE-EVFYYLVSIIS 282
Query: 195 VLEPLYGFAAMKKSYELLKGRVRYASLLVCGYLFLCAVIS 234
L ++G M + +K + Y+S+ GYLF+ VIS
Sbjct: 283 CLSMIFG-NIMAINQTSIKRLMGYSSISQLGYLFIVLVIS 321
>Y233_METJA (Q57685) Hypothetical protein MJ0233
Length = 277
Score = 36.6 bits (83), Expect = 0.086
Identities = 40/200 (20%), Positives = 94/200 (47%), Gaps = 14/200 (7%)
Query: 57 ISHIESPFTDPAQTSHDWTLLLIIQFFYLIF--LFAFSLLSTAAVV-FTVASLYTSKPVS 113
+S + + F D ++ ++ II F + F +F L+ +A + + V + T+ V
Sbjct: 35 MSGVTTAFIDLFMERANYDIMHIIMSFLIYFGIIFIIGLIVSAIIGGYNVRIMKTT--VE 92
Query: 114 FSNTISAIPNVFKRLFITFLWVTLLMFCYNFVFILCLVLMVIAVDT--DNSVLLFFSVVL 171
N N+ L+ L++ L+ + + +L V + + + ++ F +++
Sbjct: 93 GLNVAPDWNNITDLLYRGILYIVGLVLLNIIFYFIPAILFVFGIFSLYISKIIGAFLIII 152
Query: 172 IFVLFLVVHVYITALWHLASVVSVLEPLYGFAAMKKSYELLKGRVRYASLLVCGYLFLCA 231
++F++ + + LA V ++ YGF K+ ++++ +RY L++ + A
Sbjct: 153 SILIFIISVISLWLYSKLAEVNYSVKGFYGFFEFKEIFKMI--GIRYIILVI-----IIA 205
Query: 232 VISGMFSVIVVHGGDGYDVF 251
+I+ + S+IVV + D+F
Sbjct: 206 IINFIISLIVVLPLNIIDIF 225
>COX3_LEITA (P14546) Cytochrome c oxidase polypeptide III (EC
1.9.3.1)
Length = 284
Score = 35.4 bits (80), Expect = 0.19
Identities = 22/87 (25%), Positives = 42/87 (47%), Gaps = 9/87 (10%)
Query: 76 LLLIIQFFYLIFLFAFSLLSTAAVVFTVASLYTSKPVSFS--------NTISAIPNVFKR 127
LLL + FY++F + A VF + +++ F + + + N F
Sbjct: 94 LLLFLSLFYVVFSLVLFVSVEFAFVFVIPVMFSCLICDFGFVFYWYFIDIFNLLINTFL- 152
Query: 128 LFITFLWVTLLMFCYNFVFILCLVLMV 154
LF++ L+V ++F + F F LC++ M+
Sbjct: 153 LFVSGLFVNFVLFLFWFRFFLCVLFML 179
>YS96_CAEEL (Q09965) Putative G protein-coupled receptor B0244.6
Length = 982
Score = 35.0 bits (79), Expect = 0.25
Identities = 35/159 (22%), Positives = 70/159 (44%), Gaps = 12/159 (7%)
Query: 69 QTSHDWTLLLIIQFFYLI-FLFAFSLLSTAAVVFTVASLY--------TSKPVSFSNTIS 119
Q SH +T+ L F L F+ F ++++ +VFT+A L+ +S+ + SNT+S
Sbjct: 407 QISHHFTICLYFSFGNLFDFIGNFIIIASVCLVFTIAILFFVFISLVRSSRKLKRSNTLS 466
Query: 120 AIPNVFKRLFITFLWVTLLMFCYNFVFILCLVLMVIAVDTDNSVLLFFSVVLIFVLFLVV 179
+ + KR+ W + + I+ V ++ D F F+ ++
Sbjct: 467 SSASSVKRVRNRLGWSIIAVCLIAAAQIIPYVFLLDVAPHDIETCKGFYKANKFMGEVIA 526
Query: 180 HVYITALWHLASVVSVLEPLYGFAAMKKSYELLKGRVRY 218
+ + +W + +L+P+ KK E +K + R+
Sbjct: 527 GLCESVVW---IFLFILDPIVNIFFDKKVSEKVKQQFRW 562
>XK_HUMAN (P51811) Membrane transport protein XK (Kx antigen)
Length = 444
Score = 35.0 bits (79), Expect = 0.25
Identities = 30/165 (18%), Positives = 68/165 (41%), Gaps = 29/165 (17%)
Query: 25 KISPKTFYLITLILIFPLSFAILAHSLFTHPLISHIESPFTDPAQTSHDWTLLLIIQFFY 84
K+ P + I L F ++ ++ LFT L + W +++I+ F+
Sbjct: 202 KVKPLAYVCIFLWRSFEIATRVVVLVLFTSVLKT---------------WVVVIILINFF 246
Query: 85 LIFLFAFSLLSTAAVVFTVASLYTSKPVSFSNTISAIPNVFKRLFITFLWVTLLMFCYNF 144
FL+ + L + F P + +S + F+T L+ + MFC++
Sbjct: 247 SFFLYPWILFWCSGSPF---------PENIEKALSRVGTTIVLCFLTLLYTGINMFCWSA 297
Query: 145 VFILCLVLMVIAVDTDNSVLLFFSVVLIFVLFLVVHVYITALWHL 189
V L + + D + ++ +++ +++ + + + LW+L
Sbjct: 298 V-----QLKIDSPDLISKSHNWYQLLVYYMIRFIENAILLLLWYL 337
>MRPA_BACPF (Q9RGZ5) Na(+)/H(+) antiporter subunit A (Multiple
resistance and pH homeostasis protein A) (Mrp complex
subunit A)
Length = 805
Score = 35.0 bits (79), Expect = 0.25
Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 8/168 (4%)
Query: 74 WTLLLIIQFFYLIFLFAFSLLSTAAVVFTVASLYTSKPVSFSNTISAIPNVFKRLFITFL 133
W +L++ ++ F+ S+ ST VV S ++F+ + + +F L IT +
Sbjct: 32 WFVLVLPLVLFIYFIQYLSITSTGGVVEHTIPWVPSLGINFTVFVDGLSLLFA-LLITGI 90
Query: 134 WVTLLMFCYNFVFILCLVLMVIAVDTDNSVLLFFSVVLIFVLFLVVHVYITALWHLASVV 193
++++ I L +++ LL F ++ V+ + + W L S+
Sbjct: 91 GTLVILYS-----IFYLSKKTESLNNFYVYLLMFMGAMLGVVLSDNLIVLYVFWELTSLA 145
Query: 194 SVLEPLYGFAAMKKSYELLKGRV--RYASLLVCGYLFLCAVISGMFSV 239
S L Y F K +Y K + + + G L V++G FS+
Sbjct: 146 SSLLISYWFHREKSTYGAQKSMLITVFGGFAMLGGFSLLYVMTGTFSI 193
>NU5M_CERSI (O03205) NADH-ubiquinone oxidoreductase chain 5 (EC
1.6.5.3)
Length = 606
Score = 34.7 bits (78), Expect = 0.33
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 28 PKTFYLITLILIFPLSF----AILAHSLFTHPLISHIESPFTDPAQTSHDWTLLLIIQFF 83
P++ LIT+ PL +L S+F IS+ P T P T + L +
Sbjct: 435 PRSLTLITINENNPLLMNSIKRLLIGSIFAGFFISNNIYPTTIPKTTMPHYLKLTALAVT 494
Query: 84 YLIFLFAFSLLSTAAVVFTVASLYTSKPVSFSNTISAIPNVFKRL 128
L F+ A L + + + + S P+ FSN + P +F RL
Sbjct: 495 ILGFMMALEL---SLATYNLKLKHPSSPLKFSNLLGYFPTIFHRL 536
>MSBA_RALSO (Q8XXB6) Lipid A export ATP-binding/permease protein
msbA
Length = 592
Score = 34.3 bits (77), Expect = 0.43
Identities = 22/76 (28%), Positives = 39/76 (50%), Gaps = 2/76 (2%)
Query: 174 VLFLVVHVYITALWHLASVVSVLEPLYGFAAMKKSYELLKGRVRYASLLVCGYLFLCAVI 233
VL L++ ++ T W L VV+V+ P+ GF M + L+ R L ++
Sbjct: 160 VLALLIFLFYTN-WRLTLVVAVILPVIGF-LMSRINRRLRSLNREHQNLTNEAAYVVEEA 217
Query: 234 SGMFSVIVVHGGDGYD 249
+G + V+ +HGG+ Y+
Sbjct: 218 AGGYKVVKLHGGEAYE 233
>CYA1_DROME (P32870) Ca(2+)/calmodulin-responsive adenylate cyclase
(EC 4.6.1.1) (ATP pyrophosphate-lyase) (Rutabaga
protein)
Length = 2248
Score = 33.9 bits (76), Expect = 0.56
Identities = 36/174 (20%), Positives = 71/174 (40%), Gaps = 23/174 (13%)
Query: 84 YLIFLFAFSLLSTAAVVFTVASLYTSKPVSFSNTISAIPNVFKRLFITFLWVTLLM---- 139
Y + L FS+L A+VF + + + ++F+N ++ N+F + V L++
Sbjct: 30 YTLKLQRFSVLGVVALVFVLCGVMAALSLTFNNAVT-FHNIFNAIVCGLFAVVLVLLQCS 88
Query: 140 ---------FCYN---FVFILCLVLM-----VIAVDTDNSVLLFFSVVLIFVLFLVVHVY 182
CY F +C+V M V VDT V+ ++FV+FL +
Sbjct: 89 VIKDHHLPTLCYGILLFTASICVVSMPTLGSVFPVDT-KEVMAEGVWQIVFVVFLAYAMM 147
Query: 183 ITALWHLASVVSVLEPLYGFAAMKKSYELLKGRVRYASLLVCGYLFLCAVISGM 236
+W + L ++ + K + + Y L+ +F+ ++G+
Sbjct: 148 PLQIWEAVAFGIALPSVHISLTVYKIFTDALRYLEYNQLIANIVIFIGVNVAGL 201
>NU2M_ASCSU (P24877) NADH-ubiquinone oxidoreductase chain 2 (EC
1.6.5.3)
Length = 300
Score = 33.5 bits (75), Expect = 0.73
Identities = 37/130 (28%), Positives = 60/130 (45%), Gaps = 19/130 (14%)
Query: 71 SHDWTLL--------LIIQFFYLIFLFAFSLLSTAAVVFT-----VASLYTSKP--VSFS 115
S +W +L +I FFY + L AF + + F V ++ + P VSF
Sbjct: 156 SFNWVVLTCFLSVVNVIYLFFYYVVLMAFLMPNFNVKDFNFVNWEVLLVFLNVPFSVSFF 215
Query: 116 NTISAIPNVFKRLFITFLWVTLLMFCYNFVFILCLVLMVI---AVDTDNSVLLFFSVVLI 172
I + VFK + L++ L+MF F L LV M + + DN +LFF +V
Sbjct: 216 IKIFVLSEVFKLDGLFLLFLLLMMFLSMLCFSLWLVNMSVKNMKMLGDNFKVLFF-LVFP 274
Query: 173 FVLFLVVHVY 182
++F V++ +
Sbjct: 275 MMVFSVIYYF 284
>CIN4_RAT (P15390) Sodium channel protein type IV alpha subunit
(Voltage-gated sodium channel alpha subunit Nav1.4)
(Sodium channel protein, skeletal muscle alpha-subunit)
(Mu-1)
Length = 1840
Score = 33.5 bits (75), Expect = 0.73
Identities = 19/84 (22%), Positives = 43/84 (50%), Gaps = 14/84 (16%)
Query: 134 WVTLLMFCYNFVFILCLVLMVIAVDTDNS----VLLFFSVVLIFVL----------FLVV 179
+VT +F + + ++CL ++ + V+TD+ V + +++ ++F++ F +
Sbjct: 1342 FVTKQVFDISIMILICLNMVTMMVETDDQSQLKVDILYNINMVFIIIFTGECVLKMFALR 1401
Query: 180 HVYITALWHLASVVSVLEPLYGFA 203
H Y T W++ V V+ + G A
Sbjct: 1402 HYYFTIGWNIFDFVVVILSIVGLA 1425
>NU5C_SORBI (Q33066) NAD(P)H-quinone oxidoreductase chain 5,
chloroplast (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain
5) (NADH-plastoquinone oxidoreductase chain 5)
(Fragment)
Length = 702
Score = 33.1 bits (74), Expect = 0.95
Identities = 21/63 (33%), Positives = 31/63 (48%), Gaps = 7/63 (11%)
Query: 177 LVVHVYITALWHLAS--VVSVLEPLYGFAAMKKSYELLKGRVR-----YASLLVCGYLFL 229
L+ H Y AL L S V+ +EPL G++ K +L G +R + +CG L L
Sbjct: 338 LITHAYSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCGTLSL 397
Query: 230 CAV 232
C +
Sbjct: 398 CGI 400
>NU5C_MAIZE (P46620) NAD(P)H-quinone oxidoreductase chain 5,
chloroplast (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain
5) (NADH-plastoquinone oxidoreductase chain 5)
Length = 738
Score = 33.1 bits (74), Expect = 0.95
Identities = 21/63 (33%), Positives = 31/63 (48%), Gaps = 7/63 (11%)
Query: 177 LVVHVYITALWHLAS--VVSVLEPLYGFAAMKKSYELLKGRVR-----YASLLVCGYLFL 229
L+ H Y AL L S V+ +EPL G++ K +L G +R + +CG L L
Sbjct: 346 LITHAYSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCGTLSL 405
Query: 230 CAV 232
C +
Sbjct: 406 CGI 408
>CYB_SAISC (Q35930) Cytochrome b
Length = 379
Score = 33.1 bits (74), Expect = 0.95
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 7/138 (5%)
Query: 22 SIPKISPKTFYLITLILIFPLSFAILAHSLFTHPLISHIESPFTDPAQ--TSHDWTLLLI 79
S+ K + F+ +L F ++ H LF H SH S T T H + +
Sbjct: 169 SVDKATLTRFFTFHFVLPFIIAALATIHLLFLHETGSHNPSGMTSNPDKITFHPYYTIKD 228
Query: 80 IQFFYLIFLFAFSLLSTAAVVFTVASLYTSKPVSFSNTISAIPNVFKRLFITFLWVTLLM 139
I L+ L SL + T YT +N +S P++ + F + L
Sbjct: 229 ILGLILLLLLLMSLTLFMPDLLTDPDNYT-----LANPLSTPPHIKPEWYFLFAYAILRS 283
Query: 140 FCYNFVFILCLVLMVIAV 157
+L LVL ++ +
Sbjct: 284 IPNKLGGVLALVLSILVL 301
>CYB_PYTRE (O48277) Cytochrome b
Length = 371
Score = 33.1 bits (74), Expect = 0.95
Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 22/125 (17%)
Query: 24 PKISPKTFYLITLILIFPLSFAILAHSLFTHPLISHIESPFTDPAQTSHDWTLLLIIQFF 83
P S K F L+TL+++ +F P +P P +W
Sbjct: 214 PYHSYKDFLLLTLMVLSLFIIVSFFPDIFNDPDNFSKANPLVTPQHIKPEW--------- 264
Query: 84 YLIFLFAFSLL--------STAAVVFTVASLYTSKPVSFSNTISAIPNVFKRLFITFLWV 135
FLFA+ +L A+V ++ L+T + F++T + P F+ L+ W
Sbjct: 265 --YFLFAYGILRSIPNQLGGALALVMSIMILFT---IPFTHTANLRPMTFRPLYQLMFWT 319
Query: 136 TLLMF 140
+ F
Sbjct: 320 LVSTF 324
>CYB_LEMCA (Q34876) Cytochrome b
Length = 379
Score = 33.1 bits (74), Expect = 0.95
Identities = 31/137 (22%), Positives = 56/137 (40%), Gaps = 9/137 (6%)
Query: 22 SIPKISPKTFYLITLILIFPLSFAILAHSLFTHPLISHIESPFTDPAQTSHDWTLLLIIQ 81
S+ K + F+ IL F ++ ++ H LF H E+ +P TS D +
Sbjct: 169 SVDKATLTRFFAFHFILPFIIATLVMVHLLFLH------ETGSNNPLGTSSDSDKIPFHP 222
Query: 82 FFY---LIFLFAFSLLSTAAVVFTVASLYTSKPVSFSNTISAIPNVFKRLFITFLWVTLL 138
++ L+ L LL+ V+F+ L S +N +S P++ + F + L
Sbjct: 223 YYTIKDLLGLMLLILLTMTLVLFSPDLLGDPDNYSPANPLSTPPHIKPEWYFLFAYAILR 282
Query: 139 MFCYNFVFILCLVLMVI 155
+L LV ++
Sbjct: 283 SIPNKLGGVLALVFSIL 299
>NUOM_RHOCA (P50974) NADH-quinone oxidoreductase chain M (EC
1.6.99.5) (NADH dehydrogenase I, chain M) (NDH-1, chain
M)
Length = 512
Score = 32.7 bits (73), Expect = 1.2
Identities = 31/111 (27%), Positives = 54/111 (47%), Gaps = 9/111 (8%)
Query: 168 SVVLIFVLFLVVHVYITALWHLASVVSVLEPLYGFAAMKKSYELLKGRVRYASLLVCGYL 227
S++ + + ++ + I + WH+ + V E + F + E L V A LV YL
Sbjct: 85 SILFVMLTTFLMPLTIASAWHVETRVK--EYMIAFLVL----EALMIGVFVALDLVLFYL 138
Query: 228 FLCAVISGMFSVIVVHGGDG--YDVFSRIFIGGFLVGVLVIVNLVGLLVQS 276
F A + MF +I + GG Y F + F+ FL VL++V +V + + +
Sbjct: 139 FFEAGLIPMFLIIGIWGGKERIYAAF-KFFLYTFLGSVLMLVAMVAMYMMA 188
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.332 0.146 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,126,342
Number of Sequences: 164201
Number of extensions: 1405570
Number of successful extensions: 5872
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 5832
Number of HSP's gapped (non-prelim): 116
length of query: 320
length of database: 59,974,054
effective HSP length: 110
effective length of query: 210
effective length of database: 41,911,944
effective search space: 8801508240
effective search space used: 8801508240
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 66 (30.0 bits)
Medicago: description of AC146651.4