BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146649.9 - phase: 0 /pseudo
(1684 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATRX_CAEEL (Q9U7E0) Transcriptional regulator ATRX homolog (X-li... 61 3e-08
GAR2_SCHPO (P41891) Protein gar2 55 2e-06
POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 52 1e-05
ORC2_DROME (Q24168) Origin recognition complex subunit 2 (DmORC2) 49 2e-04
SR40_YEAST (P32583) Suppressor protein SRP40 46 0.001
TOP1_SCHPO (P07799) DNA topoisomerase I (EC 5.99.1.2) 44 0.003
RL29_MYCGE (P47405) 50S ribosomal protein L29 44 0.003
PIT_DROME (Q9VD51) Probable ATP-dependent helicase pitchoune 44 0.003
MLH_TETTH (P40631) Micronuclear linker histone polyprotein (MIC ... 44 0.004
IF2P_HUMAN (O60841) Eukaryotic translation initiation factor 5B ... 44 0.004
NP14_RAT (P41777) Nucleolar phosphoprotein p130 (Nucleolar 130 k... 44 0.005
MYSB_CAEEL (P02566) Myosin heavy chain B (MHC B) 44 0.005
IF2_AQUAE (O67825) Translation initiation factor IF-2 43 0.006
CYL1_BOVIN (P35662) Cylicin I (Multiple-band polypeptide I) 43 0.006
CYL2_BOVIN (Q28092) Cylicin II (Multiple-band polypeptide II) 43 0.008
YFC3_YEAST (P43573) Hypothetical 91.4 kDa protein in STE2-FRS2 i... 42 0.014
RA50_SULAC (O33600) DNA double-strand break repair rad50 ATPase 42 0.019
ATRX_DROME (Q9GQN5) Transcriptional regulator ATRX homolog (X-li... 41 0.024
ZCH9_MOUSE (Q8R1J3) Zinc finger CCHC domain containing protein 9 41 0.032
NUCL_XENLA (P20397) Nucleolin (Protein C23) 41 0.032
>ATRX_CAEEL (Q9U7E0) Transcriptional regulator ATRX homolog
(X-linked nuclear protein-1)
Length = 1359
Score = 60.8 bits (146), Expect = 3e-08
Identities = 64/199 (32%), Positives = 91/199 (45%), Gaps = 28/199 (14%)
Query: 212 NEHESSKKSKSIALPSKGKSSKSSKAYKASESEEESPDGDSDEDHSVKMAMLSNKLEYLA 271
+E E KKSKS + K KS K S SE+E DSDE+ K S K +
Sbjct: 96 DEEEDRKKSKSKKKVDQKKKEKSKKKRTTSSSEDE----DSDEEREQKSKKKSKKTKKQT 151
Query: 272 -----------RKQKKFLSKRNGYKNWKR--EDQKGCFNCKKPGHFIADCPDLQKEKSKS 318
RK KK SK+N K+ K+ E + +KP K+ K
Sbjct: 152 SSESSEESEEERKVKK--SKKNKEKSVKKRAETSEESDEDEKPSK-------KSKKGLKK 202
Query: 319 RPKKPSFSSSKFRKQIKKSLMATWEDLDSESGSDKEEADDDAKAAMRLVATVSSEAVSES 378
+ K S S S+ K++KKS + + + ES S+ +EA + K R + SSE SES
Sbjct: 203 KAKSESESESEDEKEVKKSKKKSKKVVKKESESE-DEAPEKKKTEKRKRSKTSSEESSES 261
Query: 379 E-SDSEDENEVYSKIPRQE 396
E SD E+E + S P+++
Sbjct: 262 EKSDEEEEEKESSPKPKKK 280
Score = 56.6 bits (135), Expect = 6e-07
Identities = 47/173 (27%), Positives = 78/173 (44%), Gaps = 17/173 (9%)
Query: 216 SSKKSKSIALPSKGKSSKSSKAYKASESEEESPDGDSDEDHSVKMAMLSNKLEYLARKQK 275
SS++ S KSSK S+ SESE + D + D S + K + ++K++
Sbjct: 63 SSEEDDDDEEESPRKSSKKSRKRAKSESESDESDEEEDRKKSKSKKKVDQKKKEKSKKKR 122
Query: 276 KFLSKRNGYKNWKREDQKGCFNCKKPGHFIADCPDLQKEKSKSRPKKPSFSSSKFRKQIK 335
S + + +RE + KK + +K+K + S S+ +++K
Sbjct: 123 TTSSSEDEDSDEEREQKS-----KK-----------KSKKTKKQTSSESSEESEEERKVK 166
Query: 336 KSLMATWEDLDSESGSDKEEADDDAKAAMRLVATVSSEAVSESESDSEDENEV 388
KS E + EE+D+D K + + + +A SESES+SEDE EV
Sbjct: 167 KS-KKNKEKSVKKRAETSEESDEDEKPSKKSKKGLKKKAKSESESESEDEKEV 218
Score = 45.4 bits (106), Expect = 0.001
Identities = 55/211 (26%), Positives = 91/211 (43%), Gaps = 41/211 (19%)
Query: 213 EHESSKKSKSIALPSKGKSSKSSKAYKASESEEESPDGDSDEDHSVKM----AMLSNKLE 268
E +S KKSK K K SS++ + SE E + +++ SVK + S++ E
Sbjct: 137 EQKSKKKSK------KTKKQTSSESSEESEEERKVKKSKKNKEKSVKKRAETSEESDEDE 190
Query: 269 YLARKQKKFLSKR-NGYKNWKREDQKGCFNCKKPGHFI----ADCPDLQKEKSKSRPKKP 323
++K KK L K+ + ED+K KK + ++ D EK K+ +K
Sbjct: 191 KPSKKSKKGLKKKAKSESESESEDEKEVKKSKKKSKKVVKKESESEDEAPEKKKTEKRKR 250
Query: 324 SFSSSKFRKQIKKSLMATWEDLDSESG---------------SDKEEADDDA-------- 360
S +SS+ + +KS E+ + ES SD+E + D
Sbjct: 251 SKTSSEESSESEKS---DEEEEEKESSPKPKKKKPLAVKKLSSDEESEESDVEVLPQKKK 307
Query: 361 KAAMRLVATVSSEAVSESESDSEDENEVYSK 391
+ A+ L++ E +SES++ D E SK
Sbjct: 308 RGAVTLISDSEDEKDQKSESEASDVEEKVSK 338
Score = 33.1 bits (74), Expect = 6.7
Identities = 30/104 (28%), Positives = 43/104 (40%), Gaps = 11/104 (10%)
Query: 302 GHFIAD-----CPDLQKEKSKSRPKKPSFSSSKFRKQIKKSLMATWEDLDSESGSDKEEA 356
GH I D ++ E+ + R +K + K K A S EE
Sbjct: 13 GHVIEDEDLEMARQIENERKEKRAQKLKEKREREGKPPPKKRPAK-----KRKASSSEED 67
Query: 357 DDDAKAAMRLVATVSSE-AVSESESDSEDENEVYSKIPRQELID 399
DDD + + R + S + A SESESD DE E K ++ +D
Sbjct: 68 DDDEEESPRKSSKKSRKRAKSESESDESDEEEDRKKSKSKKKVD 111
Score = 32.7 bits (73), Expect = 8.7
Identities = 72/374 (19%), Positives = 140/374 (37%), Gaps = 38/374 (10%)
Query: 54 DEEGAAIDRKIHTPAQKKTYKKHHKIRGIIVASIP--------RTEYMKMSDKSTAKAMF 105
DE DRK +K KK K + S R + K K T K
Sbjct: 93 DESDEEEDRKKSKSKKKVDQKKKEKSKKKRTTSSSEDEDSDEEREQKSKKKSKKTKKQTS 152
Query: 106 ASLCANYEGSKKVREAKALMLVHQYELFKMKDDESIEEMYSRFQTLVSGLQILKKSYVTS 165
+ E +KV+++K ++ + K + + S E + S + KK+ S
Sbjct: 153 SESSEESEEERKVKKSKK----NKEKSVKKRAETSEESDEDEKPSKKSKKGLKKKAKSES 208
Query: 166 DLVSKILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSLKVHEMSLNEHESSKKSKSIAL 225
+ S+ + + + +++ + + E + + + +E ESS+ KS
Sbjct: 209 ESESEDEKEVKKSKKKSKKVVKKESESEDEAPEKKKTEKRKRSKTSSE-ESSESEKSDEE 267
Query: 226 PSKGKSSKSSK-----AYKASESEEESPDGDSDEDHSVK----MAMLSNKLEYLARKQKK 276
+ +SS K A K S+EES + D + K + ++S+ + +K +
Sbjct: 268 EEEKESSPKPKKKKPLAVKKLSSDEESEESDVEVLPQKKKRGAVTLISDSEDEKDQKSES 327
Query: 277 FLS---KRNGYKNWKREDQKGCFNCKKPGHFIADCPDLQKEKSKSRPKKPSFSSSKFRKQ 333
S ++ K K+++ + G + +KEK + + K SSK +K+
Sbjct: 328 EASDVEEKVSKKKAKKQESSESGSDSSEGSITVNRKSKKKEKPEKKKKGIIMDSSKLQKE 387
Query: 334 I----------KKSLMATWEDLDS---ESGSDKEEADDDAKAAMRLVATVSSEAVSESES 380
+K L ++ + E G D E + +L + V S +
Sbjct: 388 TIDAERAEKERRKRLEKKQKEFNGIVLEEGEDLTEMLTGTSSQRKLKSVVLDPDSSTVDE 447
Query: 381 DSEDENEVYSKIPR 394
+S+ EV++ + R
Sbjct: 448 ESKKPVEVHNSLVR 461
>GAR2_SCHPO (P41891) Protein gar2
Length = 500
Score = 54.7 bits (130), Expect = 2e-06
Identities = 51/192 (26%), Positives = 76/192 (39%), Gaps = 16/192 (8%)
Query: 196 SVEDLVSSLKVHEMSLNEHESSKKSKSIALPSKGKSSKSSKAYKASESEEESPDGDSDED 255
S E S+K + S + ESS +S+S + S+ +SS S +SESE S + S E
Sbjct: 63 SPEPSKKSVKKQKKSKKKEESSSESESESSSSESESSSSESESSSSESESSSSESSSSES 122
Query: 256 HSVKMAMLSNKLEYLARKQKKFLSKRNGYKNWKREDQKGCFNCKKPGHFIADCPDLQKEK 315
+ K E + S+ K E++K D E
Sbjct: 123 EEEVIVKTEEKKESSSESSSSSESEEEEEAVVKIEEKK------------ESSSDSSSES 170
Query: 316 SKSRPKKPSFSSSKFRKQIKKSLMATWEDLDSESGSDKEEADDDAKAAMRLVATVSSEAV 375
S S + S SS ++ ++ SES SD E + D + + S +
Sbjct: 171 SSSESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSESSSDSSSES----GDSDSSSD 226
Query: 376 SESESDSEDENE 387
SESES SEDE +
Sbjct: 227 SESESSSEDEKK 238
Score = 43.1 bits (100), Expect = 0.006
Identities = 49/197 (24%), Positives = 87/197 (43%), Gaps = 18/197 (9%)
Query: 209 MSLNEHESSKKSKSIALPSKGKSSKSSKAYKAS-ESEEESPDGDSDEDHSVKMAMLSNKL 267
M+ + S KKS KG K SK+ K + E+ +E S D S K + K
Sbjct: 1 MAKKDKTSVKKSVKETASKKGAIEKPSKSKKITKEAAKEIAKQSSKTDVSPKKSKKEAKR 60
Query: 268 EYLARKQKKFLSKRNGYKNWKREDQKGCFNCKKPGHFIADCPDLQKEKSKSRPKKPSFSS 327
KK + K+ K K++++ + + ++ + E S S + S S
Sbjct: 61 ASSPEPSKKSVKKQ---KKSKKKEESSSESESESSSSESESSSSESESSSSESESSSSES 117
Query: 328 SKFRKQIKKSLMATWEDLDSES-GSDKEEADDDAKAAMRLV---------ATVSSEAVSE 377
S + ++ ++ T E +S S S E++++ +A +++ ++ SS + SE
Sbjct: 118 SSSESE-EEVIVKTEEKKESSSESSSSSESEEEEEAVVKIEEKKESSSDSSSESSSSESE 176
Query: 378 SE---SDSEDENEVYSK 391
SE S+SE+E EV K
Sbjct: 177 SESSSSESEEEEEVVEK 193
Score = 42.0 bits (97), Expect = 0.014
Identities = 61/296 (20%), Positives = 111/296 (36%), Gaps = 36/296 (12%)
Query: 93 MKMSDKSTAKAMFASLCANYEGSKKVREAKALMLVHQYELFKMKDDESIEEMYSRFQTL- 151
M DK++ K + +K ++K + E+ K + S+ +
Sbjct: 1 MAKKDKTSVKKSVKETASKKGAIEKPSKSKKITKEAAKEIAKQSSKTDVSPKKSKKEAKR 60
Query: 152 VSGLQILKKSYVTSDLVSKILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSLKVHEMSL 211
S + KKS V K +S + E + + S + SS E S
Sbjct: 61 ASSPEPSKKS------VKKQKKSKKKEESSSESESESSSSESESSSSESESSSSESESSS 114
Query: 212 NEHESSKKSKSIALPSKGKSSKSSKAYKASESEEESPDGDSDEDHSVKMAMLSNKLEYLA 271
+E SS+ + + + ++ K SS++ +SESEEE E+ VK+
Sbjct: 115 SESSSSESEEEVIVKTEEKKESSSESSSSSESEEE-------EEAVVKI----------- 156
Query: 272 RKQKKFLSKRNGYKNWKREDQKGCFNCKKPGHFIADCPDLQKEKSKSRPKKPSFSSSKFR 331
++KK S + ++ E + + ++ + ++ K+ KK S S
Sbjct: 157 -EEKKESSSDSSSESSSSESESESSS--------SESEEEEEVVEKTEEKKEGSSESSSD 207
Query: 332 KQIKKSLMATWEDLDSESGSDKEEADDDAKAAMRLVATVSSEAVSESESDSEDENE 387
+ + D DS S S+ E + +D K R S E ++ S+D NE
Sbjct: 208 SESSSDSSSESGDSDSSSDSESESSSEDEK--KRKAEPASEERPAKITKPSQDSNE 261
>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from
transposon TNT 1-94 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1328
Score = 52.4 bits (124), Expect = 1e-05
Identities = 70/318 (22%), Positives = 120/318 (37%), Gaps = 77/318 (24%)
Query: 14 KFNGDPEEFSWWKTNMYSY--------IMGLDEELWDILEDGVDDLDLDEEGAAIDRKIH 65
KFNGD FS W+ M ++ +D + D ++ D DLDE A+ R
Sbjct: 10 KFNGD-NGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMK-AEDWADLDERAASAIR--- 64
Query: 66 TPAQKKTYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANYEGSKKVREAKALM 125
+ + II D+ TA+ ++ L + Y + L
Sbjct: 65 ------LHLSDDVVNNII-------------DEDTARGIWTRLESLYMSKTLTNK---LY 102
Query: 126 LVHQYELFKMKDDESIEEMYSRFQTLVSGLQILKKSYVTSDLVSKILRSLPSRWRPKVTA 185
L Q M + + + F L++ L L D +L SLPS + T
Sbjct: 103 LKKQLYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATT 162
Query: 186 IEEAKDLNTLSVEDLVSSLKVHEMSLNEHESSKKSKSIALPSKGKS-SKSSKAYKASESE 244
I K T+ ++D+ S+L ++E + E+ + +++ +G+S +SS Y S +
Sbjct: 163 ILHGK--TTIELKDVTSALLLNEKMRKKPEN--QGQALITEGRGRSYQRSSNNYGRSGAR 218
Query: 245 EESPDGDSDEDHSVKMAMLSNKLEYLARKQKKFLSKRNGYKNWKREDQKGCFNCKKPGHF 304
+S KN + + C+NC +PGHF
Sbjct: 219 GKS-------------------------------------KNRSKSRVRNCYNCNQPGHF 241
Query: 305 IADCPDLQKEKSKSRPKK 322
DCP+ +K K ++ +K
Sbjct: 242 KRDCPNPRKGKGETSGQK 259
>ORC2_DROME (Q24168) Origin recognition complex subunit 2 (DmORC2)
Length = 618
Score = 48.5 bits (114), Expect = 2e-04
Identities = 48/217 (22%), Positives = 87/217 (39%), Gaps = 24/217 (11%)
Query: 187 EEAKDLNTLSVEDLVSSLK--VHEMSLNEHESSKKSKSIALPSKGKSSKSSKAYKASESE 244
EE++DLNT V + V S S +KK ++ S GK + E
Sbjct: 28 EESEDLNTAMVGNAVESQPKVTSRRSTRRPSPTKKYQAYQKESNGKGQEERIVVNYVEMS 87
Query: 245 EESPDGDSDEDHSVKMAMLSNKLEYLARKQKKFLSKRN-------GYKNWKREDQKGCF- 296
+E D++ + N A+ S+ N G+ K+ D
Sbjct: 88 DERSSDAEDQEEEESIEESENAARPAAKDLHLIQSEYNVAGTSMFGFNTPKKRDAMALAA 147
Query: 297 --------NCKKPGHFIADCPDLQKEKSKSRPKKPSFSSSKFRKQIKKSLMATWEDLDSE 348
K PD +++KS +PK P+ ++ +KQI K + + ED +
Sbjct: 148 LNATPCTPKTPKTPRLGVKTPDTKRKKSMDQPKTPAHVRTRVKKQIAKIVADSDEDFSGD 207
Query: 349 SGSDKEEADDDAKAAMRLVATVSSEAVSESESDSEDE 385
SD +D+++ + ++ SS+A + S++D+ D+
Sbjct: 208 E-SDFRPSDEESSS-----SSSSSDAGNSSDNDAADD 238
>SR40_YEAST (P32583) Suppressor protein SRP40
Length = 406
Score = 45.8 bits (107), Expect = 0.001
Identities = 42/192 (21%), Positives = 68/192 (34%), Gaps = 3/192 (1%)
Query: 199 DLVSSLKVHEMSLNEHESSKKSKSIALPSKGKSSKSSKAYKASESEEESPDGDSDEDHSV 258
D V L V E + E SS S S S SS SS + +S E S S S
Sbjct: 9 DEVPKLSVKEKEIEEKSSSSSSSS---SSSSSSSSSSSSSSSSSGESSSSSSSSSSSSSS 65
Query: 259 KMAMLSNKLEYLARKQKKFLSKRNGYKNWKREDQKGCFNCKKPGHFIADCPDLQKEKSKS 318
+ S+ + S + E +D + E
Sbjct: 66 DSSDSSDSESSSSSSSSSSSSSSSSDSESSSESDSSSSGSSSSSSSSSDESSSESESEDE 125
Query: 319 RPKKPSFSSSKFRKQIKKSLMATWEDLDSESGSDKEEADDDAKAAMRLVATVSSEAVSES 378
K+ S ++ K+ KK+ SES S + ++++ + SS + S S
Sbjct: 126 TKKRARESDNEDAKETKKAKTEPESSSSSESSSSGSSSSSESESGSESDSDSSSSSSSSS 185
Query: 379 ESDSEDENEVYS 390
+S+S+ E++ S
Sbjct: 186 DSESDSESDSQS 197
Score = 43.9 bits (102), Expect = 0.004
Identities = 41/184 (22%), Positives = 72/184 (38%), Gaps = 7/184 (3%)
Query: 210 SLNEHESSKKSKSIALPSKGKSSKSSKAYKASESEEESPDGDSDEDHSVKMAMLSNKLEY 269
S + SS S S + S G+SS SS + +S S + S DS+ S + S+
Sbjct: 31 SSSSSSSSSSSSSSSSSSSGESSSSSSSSSSSSSSDSSDSSDSESSSSSSSSSSSSSSSS 90
Query: 270 LARKQKKFLSKRNGYKNWKRE-------DQKGCFNCKKPGHFIADCPDLQKEKSKSRPKK 322
+ + S +G + + + KK + + +K+K+ P+
Sbjct: 91 DSESSSESDSSSSGSSSSSSSSSDESSSESESEDETKKRARESDNEDAKETKKAKTEPES 150
Query: 323 PSFSSSKFRKQIKKSLMATWEDLDSESGSDKEEADDDAKAAMRLVATVSSEAVSESESDS 382
S S S S + + DS+S S + D + + SS + S+S SDS
Sbjct: 151 SSSSESSSSGSSSSSESESGSESDSDSSSSSSSSSDSESDSESDSQSSSSSSSSDSSSDS 210
Query: 383 EDEN 386
+ +
Sbjct: 211 DSSS 214
Score = 39.3 bits (90), Expect = 0.093
Identities = 48/211 (22%), Positives = 79/211 (36%), Gaps = 19/211 (9%)
Query: 202 SSLKVHEMSLNEHESSKKSKSIALPSKGKSSKSSKAYKASESEEESPD--------GDSD 253
SS S ++ ESS +S S S G SS SS + S SE ES D D++
Sbjct: 80 SSSSSSSSSSSDSESSSESDS---SSSGSSSSSSSSSDESSSESESEDETKKRARESDNE 136
Query: 254 EDHSVKMAMLSNKLEYLARKQKKFLSKRNGYKNWKREDQKGCFNCKKPGHFIADCP-DLQ 312
+ K A + + S + ++ D + +D D Q
Sbjct: 137 DAKETKKAKTEPESSSSSESSSSGSSSSSESESGSESDSDSSSSSSSSSDSESDSESDSQ 196
Query: 313 KEKSKSRP-------KKPSFSSSKFRKQIKKSLMATWEDLDSESGSDKEEADDDAKAAMR 365
S S S SSS S ++ D DS+S SD + + ++
Sbjct: 197 SSSSSSSSDSSSDSDSSSSDSSSDSDSSSSSSSSSSDSDSDSDSSSDSDSSGSSDSSSSS 256
Query: 366 LVATVSSEAVSESESDSEDENEVYSKIPRQE 396
++ S + S+SDS+ ++ S++ +E
Sbjct: 257 DSSSDESTSSDSSDSDSDSDSGSSSELETKE 287
Score = 33.1 bits (74), Expect = 6.7
Identities = 46/213 (21%), Positives = 72/213 (33%), Gaps = 43/213 (20%)
Query: 177 SRWRPKVTAIEEAKDLNTLSVEDLVSSLKVHEMSLNEHESSKKSKSIALPSKGKSSKSSK 236
++ P+ ++ E+ + S + S + S + SS S+S + SS SS
Sbjct: 144 AKTEPESSSSSESSSSGSSSSSESESGSESDSDSSSSSSSSSDSESDSESDSQSSSSSSS 203
Query: 237 AYKASESEEESPDGDSDEDHSVKMAMLSNKLEYLARKQKKFLSKRNGYKNWKREDQKGCF 296
+ +S+S+ S D SD D S + S+
Sbjct: 204 SDSSSDSDSSSSDSSSDSDSSSSSSSSSSD------------------------------ 233
Query: 297 NCKKPGHFIADCPDLQKEKSKSRPKKPSFSSSKFRKQIKKSLMATWEDLDSESGSDKE-- 354
+D S S S SSS S ++ D DS+SGS E
Sbjct: 234 ---------SDSDSDSSSDSDSSGSSDSSSSSDSSSDESTSSDSSDSDSDSDSGSSSELE 284
Query: 355 --EADDDAKAAMRLVATVSSEAVSESESDSEDE 385
EA D A A+ + S S S S ++
Sbjct: 285 TKEATADESKAEETPASSNESTPSASSSSSANK 317
>TOP1_SCHPO (P07799) DNA topoisomerase I (EC 5.99.1.2)
Length = 814
Score = 44.3 bits (103), Expect = 0.003
Identities = 53/211 (25%), Positives = 82/211 (38%), Gaps = 35/211 (16%)
Query: 209 MSLNEHESSKKSKSIALPSKGKSSKSSKAYKASESEEESPDGDSDEDHSVKMAMLSNKLE 268
+S+ + SK I++ + S SS+ + SES + +SDED +
Sbjct: 11 LSIRRRQRRGSSKRISMKESDEESDSSENHPLSESLNKKSKSESDED--------DIPIR 62
Query: 269 YLARKQKKFLSKRNGYKNWKREDQKGCFNCKKPGHFIADCPDLQKEKSKSRPKKPSFSSS 328
KK +S + K K G N KK +++E+ + KPS
Sbjct: 63 KRRASSKKNMSNSSSKKRAKVMGNGGLKNGKKTA-------VVKEEEDFNEIAKPSPKHK 115
Query: 329 KFRKQIKKSLMATWEDLDSESGSDKEEADDDAKAAMRLVATVS------------SEAVS 376
+ K A ++S KEE+D D +R V+TVS S +
Sbjct: 116 RVSK-------ANGSKNGAKSAVKKEESDTDDSVPLRAVSTVSLTPYKSELPSGASTTQN 168
Query: 377 ESESDSEDENEVYSKIPRQELIDSLETLITI 407
S +D EDE+E Y K E ID + T+
Sbjct: 169 RSPNDEEDEDEDY-KWWTSENIDDTQKWTTL 198
>RL29_MYCGE (P47405) 50S ribosomal protein L29
Length = 200
Score = 44.3 bits (103), Expect = 0.003
Identities = 36/139 (25%), Positives = 63/139 (44%), Gaps = 19/139 (13%)
Query: 555 KAKIISKPEN------LKSKVMTKPDPK--TPKIKILKRSESVPQSLIKPESKILKPKDQ 606
K K++S+ N K K+ TKP+ K T K ++ + ES P+S + + +KP Q
Sbjct: 71 KYKLLSRKTNELIVNSWKQKLSTKPESKQETKKAEVKPKVESKPESKQETKKAEVKPLKQ 130
Query: 607 KNKAVTASEKTIPKGVKPKVLNDHKLLSTYPKVQGRKSKISRINPKGPMKIWVPKSELIK 666
+ K V K PK +K + + T KV+ + P+K V K E K
Sbjct: 131 ETKKVEVKPKVEPKPLKQETKKVEARIETKTKVESK-----------PLKQEVKKVEAKK 179
Query: 667 TAGVPKGKRETKVMVPRQR 685
+ P+ + K++ +++
Sbjct: 180 SVSKPQKPVKAKMIKTKEK 198
>PIT_DROME (Q9VD51) Probable ATP-dependent helicase pitchoune
Length = 680
Score = 44.3 bits (103), Expect = 0.003
Identities = 43/142 (30%), Positives = 64/142 (44%), Gaps = 16/142 (11%)
Query: 257 SVKMAMLSNKLEYLARKQKKFLSKRNGYKNWKRED---QKGCFNCKKPG-----HFIADC 308
S++ +L K+ K KK LS++ G KN ++++ Q G KKP H D
Sbjct: 2 SIREKLLMKKI-VKREKMKKELSQKKGNKNAQKQEPPKQNGNKPSKKPEKLSKKHVAKDE 60
Query: 309 PDLQKEKSKSRPKKPSFSSSKFRKQIKKSLMATWEDLDSESGSDKEEADDDAKAAMRLVA 368
D +E + P K +KQ K + DSES D++E + D + + VA
Sbjct: 61 DDDLEEDFQEAP----LPKKKQQKQPPKKQQIQVANSDSESDDDEQEDEADEDSDLDEVA 116
Query: 369 TVSSEAV---SESESDSEDENE 387
V E V SE + EDE+E
Sbjct: 117 EVDEEDVDSGSEDDDQQEDEDE 138
>MLH_TETTH (P40631) Micronuclear linker histone polyprotein (MIC LH)
[Contains: Micronuclear linker histone-alpha;
Micronuclear linker histone-beta; Micronuclear linker
histone-delta; Micronuclear linker histone-gamma]
Length = 633
Score = 43.9 bits (102), Expect = 0.004
Identities = 43/154 (27%), Positives = 64/154 (40%), Gaps = 18/154 (11%)
Query: 216 SSKKSKSIALPSKGKSSKSSKAYKASESEE-ESPDGDSD---EDHSVKMAMLSNKLEYLA 271
SSK +K A S+G+ S SSK K+S+S+E ++ D+ ED K S+ +
Sbjct: 327 SSKSNKRKASSSRGRKSSSSKGRKSSKSQERKNSHADTSKQMEDEGQKRRQSSSSAK--- 383
Query: 272 RKQKKFLSKRNGYK--NWKREDQKGCFNCKKPGHFIADCPDLQKEKSKSRPKKPSFSSSK 329
R + S+RN K K+ + K K G K K KS K SSSK
Sbjct: 384 RDESSKKSRRNSMKEARTKKANNKSASKASKSG---------SKSKGKSASKSKGKSSSK 434
Query: 330 FRKQIKKSLMATWEDLDSESGSDKEEADDDAKAA 363
+ +S + S + + AD A+
Sbjct: 435 GKNSKSRSASKPKSNAAQNSNNTHQTADSSENAS 468
Score = 42.4 bits (98), Expect = 0.011
Identities = 43/193 (22%), Positives = 82/193 (42%), Gaps = 8/193 (4%)
Query: 202 SSLKVHEMSLNEHESSKKSKSIALPSKGKSSKSSKAYKASESEEESPDGDSDEDHSVKMA 261
SS K S N+ SS K+K + SKG+ S SS+ KAS S+ D S
Sbjct: 263 SSSKRSSSSKNKKSSSSKNKKSS-SSKGRKSSSSRGRKASSSKNRKSSKSKDRKSS---- 317
Query: 262 MLSNKLEYLARKQKKFLSKRNGYKNWKREDQKGCFNCKKPGHFIADCPDLQKEKSKSRPK 321
S+K + K K + + K KG + K + ++ + + + +
Sbjct: 318 --SSKGRKSSSSSKSNKRKASSSRGRKSSSSKGRKSSKSQERKNSHADTSKQMEDEGQKR 375
Query: 322 KPSFSSSKFRKQIKKSLMATWEDLDSESGSDKEEADDDAKAAMRLVATVSSEAVSESESD 381
+ S SS+K + KKS + ++ ++ ++K A +K+ + +S++ +S S
Sbjct: 376 RQSSSSAKRDESSKKSRRNSMKEARTKKANNK-SASKASKSGSKSKGKSASKSKGKSSSK 434
Query: 382 SEDENEVYSKIPR 394
++ + P+
Sbjct: 435 GKNSKSRSASKPK 447
Score = 37.4 bits (85), Expect = 0.35
Identities = 43/185 (23%), Positives = 70/185 (37%), Gaps = 9/185 (4%)
Query: 220 SKSIALPSKGKSSKSSKAYKASES----EEESPDGDSDEDHSVKMAMLSNKLEYLARKQK 275
SKS SKGKSS S K++ S + + G S S + S+K + R
Sbjct: 183 SKSRRSSSKGKSSVSKGRTKSTSSKRRADSSASQGRSQSSSSNRRKASSSKDQKGTRSSS 242
Query: 276 KFLSKRNGYKNWKREDQKGCFNCKKPGHFIADCPDLQKEKSKSRPKKPSFSSSKFRKQIK 335
+ S G KN + + K+ K K S K SSS+ RK
Sbjct: 243 RKASNSKGRKNSTSNKRNSSSSSKRSSSSKNKKSSSSKNKKSSSSKGRKSSSSRGRKASS 302
Query: 336 KSLMATWEDLDSESGSDK-EEADDDAKAAMRLVAT----VSSEAVSESESDSEDENEVYS 390
+ + D +S S K ++ +K+ R ++ SS + S S++ ++
Sbjct: 303 SKNRKSSKSKDRKSSSSKGRKSSSSSKSNKRKASSSRGRKSSSSKGRKSSKSQERKNSHA 362
Query: 391 KIPRQ 395
+Q
Sbjct: 363 DTSKQ 367
Score = 37.0 bits (84), Expect = 0.46
Identities = 50/202 (24%), Positives = 83/202 (40%), Gaps = 23/202 (11%)
Query: 190 KDLNTLSVEDLVSSLKVHEMSLNEHESSKKSKSIALPSKGKSSKSSKAYK-----ASESE 244
K+ T + +S S ++ +S+ KSK + SKGK+SKS A K A S
Sbjct: 397 KEARTKKANNKSASKASKSGSKSKGKSASKSKGKS-SSKGKNSKSRSASKPKSNAAQNSN 455
Query: 245 EESPDGDSDEDHSVKMAMLSNKLEYLARKQKKFLSKRNGYKNWKREDQKGCFNCKKPGHF 304
DS E+ S + + R+QK +++++ K+ KG N K
Sbjct: 456 NTHQTADSSENAS---STTQTRTRGRQREQKDMVNEKSNSKS----SSKGKKNSK----- 503
Query: 305 IADCPDLQKEKSKSRPKKPSFSSSKFRKQIKKSLMATWEDLDSESGSDKEEADDDAKAAM 364
++ K KS S+ +K ++SK +K T SES S K EA + M
Sbjct: 504 -SNTRSKSKSKSASKSRK---NASKSKKDTTNHGRQTRSKSRSESKS-KSEAPNKPSNKM 558
Query: 365 RLVATVSSEAVSESESDSEDEN 386
++ E+ +S ++
Sbjct: 559 EVIEQPKEESSDRKRRESRSQS 580
Score = 34.3 bits (77), Expect = 3.0
Identities = 43/198 (21%), Positives = 74/198 (36%), Gaps = 10/198 (5%)
Query: 216 SSKKSKSIALPSKGKS-SKSSKAYKASESEEESPDGDSDEDHSVKMAM---LSNKLEYLA 271
+S K ++ + S+G+S S SS KAS S+++ S S SNK +
Sbjct: 204 TSSKRRADSSASQGRSQSSSSNRRKASSSKDQKGTRSSSRKASNSKGRKNSTSNKRNSSS 263
Query: 272 RKQKKFLSKR---NGYKNWKREDQKGCFNCKKPGHFIADCPDLQKEKSKSRPKKPS---F 325
++ SK + KN K KG + G + + + KSK R S
Sbjct: 264 SSKRSSSSKNKKSSSSKNKKSSSSKGRKSSSSRGRKASSSKNRKSSKSKDRKSSSSKGRK 323
Query: 326 SSSKFRKQIKKSLMATWEDLDSESGSDKEEADDDAKAAMRLVATVSSEAVSESESDSEDE 385
SSS + +K+ + S G ++ + + + E +S S +
Sbjct: 324 SSSSSKSNKRKASSSRGRKSSSSKGRKSSKSQERKNSHADTSKQMEDEGQKRRQSSSSAK 383
Query: 386 NEVYSKIPRQELIDSLET 403
+ SK R+ + T
Sbjct: 384 RDESSKKSRRNSMKEART 401
>IF2P_HUMAN (O60841) Eukaryotic translation initiation factor 5B
(eIF-5B) (Translation initiation factor IF-2)
Length = 1220
Score = 43.9 bits (102), Expect = 0.004
Identities = 77/357 (21%), Positives = 137/357 (37%), Gaps = 79/357 (22%)
Query: 49 DDLDLDEEGAAID----RKIHTPAQKKTYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAM 104
DD+DLD A I+ K P + K KK K + + +K ++ + +A
Sbjct: 15 DDIDLDALAAEIEGAGAAKEQEPQKSKGKKKKEKKK----QDFDEDDILKELEELSLEA- 69
Query: 105 FASLCANYEGSKKVREAKALMLVHQYELFKMKDDESIEEMYSRFQTLVSGLQILKKSYVT 164
+G K RE A+ K E+ EE ++ G + K+S+
Sbjct: 70 --------QGIKADRETVAV-----------KPTENNEEEFTSKDKKKKGQKGKKQSFDD 110
Query: 165 SDLVSKILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSLKVHEMSLNEHESSKKSKSIA 224
+D EE +D ++ S + ++++ S ++ + +K K
Sbjct: 111 NDS-------------------EELEDKDSKSKKTAKPKVEMYSGSDDDDDFNKLPKK-- 149
Query: 225 LPSKGKSSKSSKAYKASESEEESPDGDSDEDHSVKMAMLSNKLEYLARKQKKFLSKRNGY 284
+KGK+ KS+K + SE +E D +K N + +FL R G
Sbjct: 150 --AKGKAQKSNKKWDGSEEDE-------DNSKKIKERSRINSSGESGDESDEFLQSRKGQ 200
Query: 285 KNWKR-----------EDQKGCFNCKKPGHFIADCPDLQKEKSKSRPKKPSFSSSKFRKQ 333
K ++ ED F K A EK + KK +K RK
Sbjct: 201 KKNQKNKPGPNIESGNEDDDASFKIKTVAQKKA-------EKKERERKKRDEEKAKLRKL 253
Query: 334 IKKSLMATWE-DLDSESGSDKEEADDDAKAAMRLVATV--SSEAVSESESDSEDENE 387
+K + T + D + S ++ ++ K+ + + V +SE +E+ + +ED+NE
Sbjct: 254 KEKEELETGKKDQSKQKESQRKFEEETVKSKVTVDTGVIPASEEKAETPTAAEDDNE 310
>NP14_RAT (P41777) Nucleolar phosphoprotein p130 (Nucleolar 130 kDa
protein) (140 kDa nucleolar phosphoprotein) (Nopp140)
(Nucleolar and coiled-body phosphoprotein 1)
Length = 704
Score = 43.5 bits (101), Expect = 0.005
Identities = 49/183 (26%), Positives = 77/183 (41%), Gaps = 9/183 (4%)
Query: 217 SKKSKSIALPSKGKSSKSSKAYKASESEEESPDGDSDEDHSVKMAMLSNKLEYLARKQKK 276
SKKS P K ++++ A +++S EES +E + ++S A +KK
Sbjct: 310 SKKSVGAQSPKKA-AAQTQPADSSADSSEESDSSSEEEKKTPAKTVVSKTPAKPAPVKKK 368
Query: 277 FLSKRNGYKNWKREDQ---KGCFNCKKPGHFIADCPDLQKEKSKSRPKKPSFSSSKFRKQ 333
S + + ED+ K K P A P K+ + PK+P+ S K + +
Sbjct: 369 AESSSDSSDSDSSEDEAPAKPVSATKSPLSKPAVTPKPPAAKAVATPKQPAGSGQKPQSR 428
Query: 334 IKKSLMATWEDLDSESGSDKE-----EADDDAKAAMRLVATVSSEAVSESESDSEDENEV 388
S + E SE + K+ +A AKAA L A + A +S SDSE +
Sbjct: 429 KADSSSSEEESSSSEEEATKKSVTTPKARVTAKAAPSLPAKQAPRAGGDSSSDSESSSSE 488
Query: 389 YSK 391
K
Sbjct: 489 EEK 491
Score = 37.0 bits (84), Expect = 0.46
Identities = 57/217 (26%), Positives = 86/217 (39%), Gaps = 27/217 (12%)
Query: 202 SSLKVHEMSLNEHESSKKSKSIALPSKGKSSKSSKAYKASESEEESPDGDSDEDHSVKMA 261
SS E S + E KK+ + + SK +K + K +ES +S D DS ED +
Sbjct: 331 SSADSSEESDSSSEEEKKTPAKTVVSK-TPAKPAPVKKKAESSSDSSDSDSSEDEAPAKP 389
Query: 262 MLSNKLEYLARKQKKFLSKRNGYKNWKREDQKGCFNCKKPGHFIADCPDLQKEKSKSRPK 321
+ + K + K ++ + ++ + +KP AD ++E S S +
Sbjct: 390 VSATK----SPLSKPAVTPKPPAAKAVATPKQPAGSGQKPQSRKADSSSSEEESSSSEEE 445
Query: 322 --KPSFSSSKFRKQIK--KSLMATW-------EDLDSESGSDKEEADDDAK--------- 361
K S ++ K R K SL A DSES S +EE K
Sbjct: 446 ATKKSVTTPKARVTAKAAPSLPAKQAPRAGGDSSSDSESSSSEEEKKTPPKPPAKKKAAG 505
Query: 362 AAMRLVATVSSEAV--SESESDSEDENEVYSKIPRQE 396
AA+ V A S S S SED +E K P+ +
Sbjct: 506 AAVPKPTPVKKAAAESSSSSSSSEDSSEEEKKKPKSK 542
Score = 37.0 bits (84), Expect = 0.46
Identities = 53/268 (19%), Positives = 99/268 (36%), Gaps = 22/268 (8%)
Query: 138 DESIEEMYSRFQTLVSGLQILKKSYVTSDLVSKILRSLPSRWRPKVTAIEEAKDLNTLSV 197
D + E+ S+F Q + D+ S L+S + PKV ++ + +
Sbjct: 24 DNQLSEVASKFAKATGATQQDANASSLLDIYSFWLKSTKA---PKVK-LQSNGPVAKKAK 79
Query: 198 EDLVSSLKVHEMSLNEHESSKKSKSIALPSKGKS---SKSSKAYKASESEEESPDGDSDE 254
++ SS + S E ++ ++ A P+K S A KASES + +E
Sbjct: 80 KETSSSDSSEDSSEEEDKAQVPTQKAAAPAKRASLPQHAGKAAAKASESSSSEESSEEEE 139
Query: 255 DHSVKMAMLSNKL----EYLARKQKKFLSKRNGYKNWKREDQKGCFNCKKPGHFIADCPD 310
+ K + K R K + ED+ K A P
Sbjct: 140 EKDKKKKPVQQKAVKPQAKAVRPPPKKAESSESESDSSSEDEAPQTQKPKAAATAAKAPT 199
Query: 311 LQKEKSKSRPKKPSFSSSKFRKQIKKSLMATWEDLDSESGSDKEEADDD----------- 359
+ K+ ++P P+ + K S ++ S+ ++++A
Sbjct: 200 KAQTKAPAKPGPPAKAQPKAANGKAGSSSSSSSSSSSDDSEEEKKAAAPLKKTAPKKQVV 259
Query: 360 AKAAMRLVATVSSEAVSESESDSEDENE 387
AKA +++ A + ++ S +S SE+E E
Sbjct: 260 AKAPVKVTAAPTQKSSSSEDSSSEEEEE 287
Score = 33.5 bits (75), Expect = 5.1
Identities = 49/215 (22%), Positives = 79/215 (35%), Gaps = 32/215 (14%)
Query: 217 SKKSKSIALPSKGKSSKSSKAYKASESEEESPDGDSDEDHS----------VKMAMLSNK 266
S K+ + L S G +K KA K + S + S D +ED + K A L
Sbjct: 60 STKAPKVKLQSNGPVAK--KAKKETSSSDSSEDSSEEEDKAQVPTQKAAAPAKRASLPQH 117
Query: 267 LEYLARKQKKFLSKRNGYKNWKREDQKGCFNCKKPGHFIADCPDLQK-----EKSKSRPK 321
A K + S + + +D+K KKP A P + +K++S
Sbjct: 118 AGKAAAKASESSSSEESSEEEEEKDKK-----KKPVQQKAVKPQAKAVRPPPKKAESSES 172
Query: 322 KPSFSSSKFRKQIKKSLMATWEDLDSESGSDKEEADD------DAKAAMRLVATVSSEAV 375
+ SS Q +K A K A KAA + SS +
Sbjct: 173 ESDSSSEDEAPQTQKPKAAATAAKAPTKAQTKAPAKPGPPAKAQPKAANGKAGSSSSSSS 232
Query: 376 SESESDSEDENEVYSKI----PRQELIDSLETLIT 406
S S DSE+E + + + P+++++ +T
Sbjct: 233 SSSSDDSEEEKKAAAPLKKTAPKKQVVAKAPVKVT 267
>MYSB_CAEEL (P02566) Myosin heavy chain B (MHC B)
Length = 1966
Score = 43.5 bits (101), Expect = 0.005
Identities = 72/337 (21%), Positives = 135/337 (39%), Gaps = 55/337 (16%)
Query: 73 YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANYEGSKKVREAKALMLVHQYEL 132
+K + K++ ++ A E K++DK KA+ SL + K++ E+ A ++ + L
Sbjct: 842 FKLYGKVKPMLKAGKEAEELEKINDK--VKALEDSLAKEEKLRKELEESSAKLVEEKTSL 899
Query: 133 FKMKDDESIEEMYSRFQTLVSGLQILKKSYVTSDLVSKILRSLPSRWRPKVTAIEEAKDL 192
F + ES + S + ++ L+ +K S +S++ L + ++ AK
Sbjct: 900 FT--NLESTKTQLSDAEERLAKLEAQQKD--ASKQLSELNDQLADN-EDRTADVQRAKKK 954
Query: 193 NTLSVEDLVSSLKVHEMSLNEHESSKKSKSIALPSKGKSSKSSKAYKASESEEESPDGDS 252
VE L ++ EMSL + ES K+SK + S D
Sbjct: 955 IEAEVEALKKQIQDLEMSLRKAESEKQSKDHQIRSLQ---------------------DE 993
Query: 253 DEDHSVKMAMLSNKLEYLARKQKKFLSKRNGYKNWKREDQKGCFNCKKPGHFIADCPDLQ 312
+ +A L+ + ++ +K + ++ + E+ KG K DL
Sbjct: 994 MQQQDEAIAKLNKEKKHQEEINRKLM------EDLQSEEDKGNHQNKVKAKLEQTLDDL- 1046
Query: 313 KEKSKSRPKKPSFSSSKFRKQIKKSLMATWEDLDSESGSDKEEADDDAKAAMRLVATVSS 372
E S R K+ K +++++ L E++D ESG + + +++ K + +VSS
Sbjct: 1047 -EDSLEREKRARADLDKQKRKVEGELKIAQENID-ESGRQRHDLENNLKKKESELHSVSS 1104
Query: 373 EAVSE------------------SESDSEDENEVYSK 391
E SE + E ENE S+
Sbjct: 1105 RLEDEQALVSKLQRQIKDGQSRISELEEELENERQSR 1141
>IF2_AQUAE (O67825) Translation initiation factor IF-2
Length = 805
Score = 43.1 bits (100), Expect = 0.006
Identities = 41/178 (23%), Positives = 76/178 (42%), Gaps = 23/178 (12%)
Query: 130 YELFKMKDDESIEEMYSRFQTLVSGLQILKKSYVTSDLVSKILRSLPSRWRPKVTA--IE 187
Y+ F +K++E EE+ + + ++ K+ ++ I+ + +P+V IE
Sbjct: 54 YDAFGIKEEEEKEEVVTEQAQAPAEVEEKKEEEKKEEV---IVEEVVEEKKPEVIVEEIE 110
Query: 188 EAKDLNTL--------SVEDLVSSLKVHEMSLNEHESSKKSKSIALPSKGKSSKSSKAYK 239
E K+ SVE+L+ + L + E K+ K + K + + + K
Sbjct: 111 EKKEEEEKKEEEKPKKSVEELIKEI------LEKKEKEKEKKKVEKERKEEKVRVVEVKK 164
Query: 240 ASESEEESPDGDSDEDHSVKMAM----LSNKLEYLARKQKKFLSKRNGYKNWKREDQK 293
EE+ + +E +KM+ + KLE+ K+KK KR K K E+ K
Sbjct: 165 EERKEEKKEEKKEEEKPKIKMSKKEREIMRKLEHAVEKEKKKQEKREKEKKKKEEEVK 222
>CYL1_BOVIN (P35662) Cylicin I (Multiple-band polypeptide I)
Length = 667
Score = 43.1 bits (100), Expect = 0.006
Identities = 54/233 (23%), Positives = 95/233 (40%), Gaps = 17/233 (7%)
Query: 183 VTAIEEAKDLNTLSVEDLVSSLKVHEMSLNEHESSKKSKSIALPSKGKSSKSSKAYKASE 242
V + + KD + + + K E + E SK +K SK K +K AS+
Sbjct: 301 VDSKDAKKDKKGATKDTKKGAKKDTESTDAESGDSKDAKKGKKESKKDKKKDAKKDAASD 360
Query: 243 SEE-ESPDGDSDEDHSVKMAMLSNKLEYLARKQKKFLSKRNGYKNWKREDQKGCFNCKKP 301
+E +S D D K + NK + + + ++ K+ K++ +KG + KK
Sbjct: 361 AESGDSKDAKKDSKKGKKDSKKDNKKKDAKKDAESTDAESGDSKDAKKDSKKGKKDSKKD 420
Query: 302 GHFIADCPDLQKEKSKSRPKKPSFSSSK------FRKQIKKSLMATWEDLDSESGSDKEE 355
D + ++S K + SK +K KK ++T D +SE + K +
Sbjct: 421 DKKKDAKKDAESTDAESGDSKNAKKDSKKGKKDDKKKDAKKDAVSTDADSESEGDAKKSK 480
Query: 356 ADD-----DAKAAMRLVATVSSEAVSESESDSEDENEVYSKIPRQELIDSLET 403
D D K + + S+ +E+ESD E + K+ R D+ +T
Sbjct: 481 KDSKKDKKDLKKDDQKKPAMKSKESTETESDWESK-----KVKRDSKKDTKKT 528
Score = 42.0 bits (97), Expect = 0.014
Identities = 52/208 (25%), Positives = 86/208 (41%), Gaps = 15/208 (7%)
Query: 187 EEAKDLNTLSVEDLVSSLKVHEMSLNEHESSKKSKSIALPSKGKSSKSSKAYKASESEEE 246
++AK S +D K S E SK +K + K S K +K K ++ + E
Sbjct: 336 KDAKKGKKESKKDKKKDAKKDAASDAESGDSKDAKKDSKKGKKDSKKDNKK-KDAKKDAE 394
Query: 247 SPDGDSDEDHSVKMAMLSNKLEYLARKQKKFLSK--------RNGYKNWKREDQKGCFNC 298
S D +S + K K + +KK K KN K++ +KG +
Sbjct: 395 STDAESGDSKDAKKDSKKGKKDSKKDDKKKDAKKDAESTDAESGDSKNAKKDSKKGKKDD 454
Query: 299 KKPG---HFIADCPDLQKEKSKSRPKKPSFSSSKFRKQ--IKKSLMATWEDLDSESGSDK 353
KK ++ D + E + KK S K K+ KK M + E ++ES +
Sbjct: 455 KKKDAKKDAVSTDADSESEGDAKKSKKDSKKDKKDLKKDDQKKPAMKSKESTETESDWES 514
Query: 354 EEADDDAKAAMRLVATVSSEAVSESESD 381
++ D+K + A ++E+ S +ESD
Sbjct: 515 KKVKRDSKKDTKKTAKKATES-SGAESD 541
Score = 40.8 bits (94), Expect = 0.032
Identities = 47/181 (25%), Positives = 74/181 (39%), Gaps = 17/181 (9%)
Query: 217 SKKSKSIALPSKGKSSKSSKAYKASESEEESPDGDSDEDHSVKMAMLSNKLEYLARKQKK 276
S SK KG + + K K ++ GDS + K +K + A+K
Sbjct: 300 SVDSKDAKKDKKGATKDTKKGAKKDTESTDAESGDSKDAKKGKKESKKDKKKD-AKKDAA 358
Query: 277 FLSKRNGYKNWKREDQKGCFNCKKPGHFIADCPDLQKEKSKSRPKKPSFSSSKFRKQ--- 333
++ K+ K++ +KG + KK D + ++S K + SK K+
Sbjct: 359 SDAESGDSKDAKKDSKKGKKDSKKDNKKKDAKKDAESTDAESGDSKDAKKDSKKGKKDSK 418
Query: 334 ---IKKSLMATWEDLDSESG--------SDKEEADDDAKAAMRLVATVSSEAVSESESDS 382
KK E D+ESG S K + DD K A + VS++A SESE D+
Sbjct: 419 KDDKKKDAKKDAESTDAESGDSKNAKKDSKKGKKDDKKKDAKK--DAVSTDADSESEGDA 476
Query: 383 E 383
+
Sbjct: 477 K 477
Score = 33.9 bits (76), Expect = 3.9
Identities = 56/238 (23%), Positives = 96/238 (39%), Gaps = 38/238 (15%)
Query: 187 EEAKDLNTLSVEDLVSSLKVHEMSLNEHESSKKSKS-----IALPSKGKSSKSSKAYKAS 241
E+ N+L +++ ++K ++ S+ ESSKK ++ I P K +K + S
Sbjct: 14 EDIHTWNSLCRQEI--TIKTYDNSIPISESSKKIRNQQYLTITFP-KSSQPGGNKRLRPS 70
Query: 242 ESEEESPDGDS---DE---------DHSVKMAMLSNKLEYLARKQKKFL----------- 278
E + P D DE HS++ S + + R+Q F
Sbjct: 71 EIQVTVPRHDKRNLDELQKPAHIWIRHSLRKKFQSPSINLIVRRQASFRHPYTHITHSKK 130
Query: 279 SKRNGYKNWKREDQKGCFNCKKPGHFIADCPDLQKEKSKSRPKKPSFSSSKFRKQIKKSL 338
++ YK+ K+E + K G D ++ K+ P K S S +K KS
Sbjct: 131 AESKKYKDDKKETALKKISKKDTGPHEVDEKPKRRNKADKTPSKSSHGSQLSKKSKSKS- 189
Query: 339 MATWEDLDSESGSDKEEADD-----DAKAAMRLVATVSSEAVSESESDSEDENEVYSK 391
E DS S S K + + D+K M +T + + S+++S+ +E SK
Sbjct: 190 ETNPESKDSISVSIKHQKKEKRYSKDSK-EMDFESTSTKKYSKSSKNNSDAVSETCSK 246
>CYL2_BOVIN (Q28092) Cylicin II (Multiple-band polypeptide II)
Length = 488
Score = 42.7 bits (99), Expect = 0.008
Identities = 57/228 (25%), Positives = 90/228 (39%), Gaps = 47/228 (20%)
Query: 181 PKVTAIEEAKDLNTLSVEDLVSSLKVHEMSL-------------NEHESSKKSKSIALPS 227
PKV +E KD + E +VS K ++S E + SKK K A S
Sbjct: 119 PKVKKSKEDKDKSDSEAESIVSKEKPRKLSKAKEEKPDEKKDLKKERKDSKKGKESATES 178
Query: 228 KG----------KSSKSSKAYKASESEEESPDGDSDEDHSVKMAMLSNKLEYLARKQKKF 277
+ K K SK K + S+ S GD+ +D +K K K+
Sbjct: 179 EDEKAGAEKGAKKDRKGSKKGKETPSDSGSEKGDAKKD---------SKKSKKDSKGKES 229
Query: 278 LSKRNGYK-NWKREDQKGCFNCKKPGHFIADCPDLQKEKSKSRPKKPSFSSSKFRKQIKK 336
++ G K + K++D+KG KK G A + +K +K KK S K ++ +
Sbjct: 230 ATESEGEKGDAKKDDKKGKKGSKK-GKESATESEGEKGDAKKDDKKGKKGSKKGKESATE 288
Query: 337 SLMATWEDLDSESGSDKEEADDDAKAAMRLVATVSSEAVSESESDSED 384
S + E G K++ K + + E+ +ESE + D
Sbjct: 289 S--------EGEKGDAKKDDKKGKKGSKK-----GKESATESEGEKGD 323
Score = 37.7 bits (86), Expect = 0.27
Identities = 49/186 (26%), Positives = 74/186 (39%), Gaps = 29/186 (15%)
Query: 215 ESSKKSKSIALPSKG----------KSSKSSKAYK--ASESEEESPDGDSDEDHSVKMAM 262
+ SKK K A S+G K K SK K A+ESE E D D+ K
Sbjct: 277 KGSKKGKESATESEGEKGDAKKDDKKGKKGSKKGKESATESEGEKGDAKKDDKKGKKG-- 334
Query: 263 LSNKLEYLARKQKKFLSKRNGYK-NWKREDQKGCFNCKKPGHFIADCPDLQKEKSKSRPK 321
++K K+ ++ G K + K++D+KG KK D + E K K
Sbjct: 335 --------SKKGKESATESEGEKGDAKKDDKKGKKGSKKGKE-----SDSKAEGDKGDAK 381
Query: 322 KPSFSSSKFRKQIKKSLMATWEDLDSESGSDKEEADDDAKAAMRLVATVSSEAVSESESD 381
K K K+ K+S + E +S DK D KA + + + + +S
Sbjct: 382 KDDKKDKKGSKKGKESATES-EGEKKDSKKDKAGKKDPTKAGEKGDESKDKKDAKKKDSK 440
Query: 382 SEDENE 387
E ++E
Sbjct: 441 KEKKDE 446
Score = 35.0 bits (79), Expect = 1.8
Identities = 43/169 (25%), Positives = 72/169 (42%), Gaps = 35/169 (20%)
Query: 216 SSKKSKSIALPSKGKSSKSSKAYKASESEEESPDGDSDEDHSVKMAMLSNKLEYLARKQK 275
S + +K A PS K KS + S+SE ES +++++
Sbjct: 106 SQEDAKQAAKPSSPKVKKSKEDKDKSDSEAES---------------------IVSKEKP 144
Query: 276 KFLSKRNGYKNWKREDQKGCFNCKKPGHFIADCPDLQKEKSKSRPKKPSFSSSKFRKQIK 335
+ LSK K +++D K K G A + E K+ +K + K RK K
Sbjct: 145 RKLSKAKEEKPDEKKDLKKERKDSKKGKESA----TESEDEKAGAEK---GAKKDRKGSK 197
Query: 336 KSLMATWEDLDSESGSDKEEADDDAKAAMRLVATVSSEAVSESESDSED 384
K ++ S+SGS+K +A D+K + + + E+ +ESE + D
Sbjct: 198 KG-----KETPSDSGSEKGDAKKDSKKSKK--DSKGKESATESEGEKGD 239
>YFC3_YEAST (P43573) Hypothetical 91.4 kDa protein in STE2-FRS2
intergenic region
Length = 796
Score = 42.0 bits (97), Expect = 0.014
Identities = 45/180 (25%), Positives = 75/180 (41%), Gaps = 18/180 (10%)
Query: 117 KVREAKALMLVHQYELFKMKDDESIEEMYSRFQTLVSGLQILKKSYVTSDLVSK------ 170
+ R+ +A + FK + S+E + +V I++K V D++ K
Sbjct: 435 RFRKDRASKKENTLSTFKQETTRSVENEVVEKEPVVG--DIIEKEPVVGDVIEKEPVVGD 492
Query: 171 ILRSLPS-----RWRPKVTAIEEAKDL--NTLSVEDLVSSLKVHEMSLN---EHESSKKS 220
++ P+ P V I E K + + + E ++ + E +N E E+ K
Sbjct: 493 VIEKEPAVTDIVEREPAVNDIVERKPVVGDIIEKEPTINDIVEKEPEINSKSEFETPFKK 552
Query: 221 KSIALPSKGKSSKSSKAYKASESEEESPDGDSDEDHSVKMAMLSNKLEYLARKQKKFLSK 280
K + K +SSKS K + E D D D+D +LSNK + +Q KF SK
Sbjct: 553 KKLKSLQKPRSSKSMKKKFDPKILENISDDDYDDDDDGNKKLLSNKSKNNTDEQDKFPSK 612
>RA50_SULAC (O33600) DNA double-strand break repair rad50 ATPase
Length = 886
Score = 41.6 bits (96), Expect = 0.019
Identities = 55/242 (22%), Positives = 99/242 (40%), Gaps = 26/242 (10%)
Query: 55 EEGAAIDRKIHTPAQKKTYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANYEG 114
EE A K+ QK++ +K GI A + + ++ +K+ + SL + ++
Sbjct: 482 EELEATRNKLQLELQKRSKEK-----GIYEAKLKELQRLE-EEKNKLQNEILSLLSYHQE 535
Query: 115 SKKVREAKALMLVHQYELFKMKD--DESIEEMYSRFQTLVSGLQILKKSY---------V 163
+ + E + ++ + E K D +E I+E R L S L L+KSY +
Sbjct: 536 FENIAEKEKELIDYHEEYLKNSDILEEDIQEQEQRLNELNSKLSELEKSYNDYKAKYQFL 595
Query: 164 TSDLVSKILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSLKVHEMSLNEHESSKKSKSI 223
+DL K L SL R R +++ +E+ K + E L + + E+E K+ +
Sbjct: 596 PADL--KSLVSLEERIRRRISELEKLK----IEYERLKEEITRMKGLKEEYEKLKEEEDA 649
Query: 224 ALPSKGKSSKSSKAYKASESEEESPD---GDSDEDHSVKMAMLSNKLEYLARKQKKFLSK 280
L + S K YK E + + D L K++ + K++
Sbjct: 650 LLNRISELGYSEKRYKQLEEIIDKLSKILSGIEADKGKIKGSLEEKIKNIEEKERNIEEL 709
Query: 281 RN 282
RN
Sbjct: 710 RN 711
>ATRX_DROME (Q9GQN5) Transcriptional regulator ATRX homolog
(X-linked nuclear protein) (dXNP) (d-xnp)
Length = 1311
Score = 41.2 bits (95), Expect = 0.024
Identities = 51/214 (23%), Positives = 93/214 (42%), Gaps = 19/214 (8%)
Query: 180 RPKVTAIEEAKDLNTLSVEDLVSSLKVHEMSLNEHES---SKKSKSIALPSKGKSSKSSK 236
RPK + L +S+ + K +MS + E+ SKKS+ S+ ++ +
Sbjct: 241 RPKRCVVR----LKRVSLPKTKPAQKPKKMSSDSEEAATTSKKSRQRRSKSESEADSDYE 296
Query: 237 AYKASESEEESPDGDSDEDHSVKMAMLSNKLEYLARKQKKFLSKR--NGYKNWKREDQKG 294
A A E EEE DE+ + + S + R++KK S + + ++ +++ +KG
Sbjct: 297 APAAEEEEEEERKSSGDEEEAANSSD-SEVMPQRKRRRKKSESDKGSSDFEPEEKQKKKG 355
Query: 295 CFNCKKPGHFIADCPDLQKEKSKSRPKKPSFSSSKFRKQIK-KSLMATWEDLDSESGSDK 353
KK +D D +K K++ K RK IK K L T ++ E +
Sbjct: 356 RKRIKKTSSGESD-GDGDDDKQKNKRK-------HIRKIIKTKDLDLTTKEAAKEEDDRR 407
Query: 354 EEADDDAKAAMRLVATVSSEAVSESESDSEDENE 387
+ +D K R+ S ++E D ++E++
Sbjct: 408 KRIEDRQKLYNRIFVKSESVEINELVLDFDEESK 441
>ZCH9_MOUSE (Q8R1J3) Zinc finger CCHC domain containing protein 9
Length = 273
Score = 40.8 bits (94), Expect = 0.032
Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 16/146 (10%)
Query: 177 SRWRPKVTAIEEAKDLNTLSVEDLVS-SLKVHEMSLNEHESSKKSKSIALPSKGKSSKSS 235
+RW +VT + L+ S ED+ S++ + SL + + S+ + L + +K
Sbjct: 2 TRWA-RVTTSNSKRPLSATSWEDMKKGSVERADQSLPNRKQCQSSR-LPLRNDSPQAKRK 59
Query: 236 KAYKASESEEESPDG-------DSDEDHSVKMAMLSNK--LEYLARKQKKFLSKRNGYKN 286
K K E E +G +S H+ ++ ++ E +A KK S+R G +
Sbjct: 60 KNKKKKEYLNEDVNGFMEYLKQNSQVLHNGQLIAADSQEVREEIAVALKKD-SRREGRRL 118
Query: 287 WKREDQKG---CFNCKKPGHFIADCP 309
++ +K CF+C++PGH IADCP
Sbjct: 119 KRQAAKKNAMVCFHCRQPGHGIADCP 144
>NUCL_XENLA (P20397) Nucleolin (Protein C23)
Length = 650
Score = 40.8 bits (94), Expect = 0.032
Identities = 50/239 (20%), Positives = 96/239 (39%), Gaps = 35/239 (14%)
Query: 170 KILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSLKVHEMSLNEHESSKKSKSIALPSK- 228
K+ + ++ +PK A KD+ E+ + + + +K A P+K
Sbjct: 2 KLAKGAKTQAKPKKAAPPPPKDMEDSEEEEDMEEDDSSDEEVEVPVKKTPAKKTATPAKA 61
Query: 229 --GKSS----------KSSKAYKASESEEESPDGDSDEDHSVKMAMLSNKLEYLARKQKK 276
GK++ K+ K K ESEEE D D + + + + +A+K++
Sbjct: 62 TPGKAATPGKKGATPAKNGKQAKKQESEEEEDDSDEEAEDQKPIKNKPVAKKAVAKKEE- 120
Query: 277 FLSKRNGYKNWKREDQKGCFN----CKKPGHFIADCPDLQKEKSKSRPKK--PSFSSSKF 330
S+ + + E++K KKP + + E+S+ P + P+
Sbjct: 121 --SEEDDDDEDESEEEKAVAKKPTPAKKPAGKKQESEEEDDEESEDEPMEVAPALKG--- 175
Query: 331 RKQIKKSLMATWEDLDSESGSDKEEADDD------AKAAMRLVATVSSEAVSESESDSE 383
KK+ A ED + E D+E+ DD+ AK + T+ +++++ SE
Sbjct: 176 ----KKTAQAAEEDDEEEDDDDEEDDDDEEEQQGSAKRKKEMPKTIPEAKKTKTDTASE 230
Score = 33.5 bits (75), Expect = 5.1
Identities = 20/72 (27%), Positives = 31/72 (42%)
Query: 316 SKSRPKKPSFSSSKFRKQIKKSLMATWEDLDSESGSDKEEADDDAKAAMRLVATVSSEAV 375
+K+ P K + K K A ++ + E EEA+D + VA +
Sbjct: 59 AKATPGKAATPGKKGATPAKNGKQAKKQESEEEEDDSDEEAEDQKPIKNKPVAKKAVAKK 118
Query: 376 SESESDSEDENE 387
ESE D +DE+E
Sbjct: 119 EESEEDDDDEDE 130
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.361 0.158 0.581
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153,400,492
Number of Sequences: 164201
Number of extensions: 5605048
Number of successful extensions: 43693
Number of sequences better than 10.0: 263
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 236
Number of HSP's that attempted gapping in prelim test: 42083
Number of HSP's gapped (non-prelim): 1278
length of query: 1684
length of database: 59,974,054
effective HSP length: 124
effective length of query: 1560
effective length of database: 39,613,130
effective search space: 61796482800
effective search space used: 61796482800
T: 11
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.9 bits)
S2: 73 (32.7 bits)
Medicago: description of AC146649.9