BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146649.7 - phase: 0 /pseudo
(859 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 59 7e-08
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 59 7e-08
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 59 7e-08
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 59 7e-08
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 58 1e-07
POL3_DROME (P04323) Retrovirus-related Pol polyprotein from tran... 56 4e-07
POL2_DROME (P20825) Retrovirus-related Pol polyprotein from tran... 54 2e-06
POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC 3.4.23... 48 1e-04
POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC 3.4.2... 46 4e-04
POL_MLVFF (P26809) Pol polyprotein [Contains: Protease (EC 3.4.2... 45 8e-04
POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic pro... 45 8e-04
POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic pro... 45 8e-04
POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic pro... 45 8e-04
POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic prot... 45 0.001
POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic pro... 45 0.001
POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC 3.4.2... 44 0.002
POL_MLVF5 (P26810) Pol polyprotein [Contains: Protease (EC 3.4.2... 44 0.002
POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.2... 43 0.003
POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.2... 43 0.003
POL_MLVAK (P03357) Pol polyprotein [Contains: Reverse transcript... 43 0.003
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 58.5 bits (140), Expect = 7e-08
Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 7/131 (5%)
Query: 722 KCIQTLNGMLTSLFRFVAKSAQHALPFFNLLKKETKFEWTNECEKALQHLKNSLSAPPVL 781
K +Q+ G++ +F+ AQ A +L+ + + W E E A Q LK + PVL
Sbjct: 1170 KELQSFLGLVGYYRKFILNFAQIASSLTSLISAKVAWIWEKEQEIAFQELKKLVCQTPVL 1229
Query: 782 SRPDEGETL------YLYLSVSSEAVSGTLNIETQEGQK-PTYFTSKALLGPETRYQKIE 834
++PD L +Y S + + L E +GQ+ P F SKAL ETRY +
Sbjct: 1230 AQPDVEAALKGDRPFMIYTDASRKGIGAVLAQEGPDGQQHPIAFASKALSPAETRYHITD 1289
Query: 835 KVALALVTAAR 845
ALA++ A R
Sbjct: 1290 LEALAMMFALR 1300
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 58.5 bits (140), Expect = 7e-08
Identities = 36/137 (26%), Positives = 72/137 (52%), Gaps = 2/137 (1%)
Query: 721 KKCIQTLNGMLTSLFRFVAKSAQHALPFFNLLKKETKFEWTNECEKALQHLKNSLSAPPV 780
+K ++ G + L +F+ K++Q P NLLKK+ +++WT +A++++K L +PPV
Sbjct: 639 RKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPV 698
Query: 781 LSRPDEGETLYLYLSVSSEAVSGTLNIETQEGQ-KPTYFTSKALLGPETRYQKIEKVALA 839
L D + + L S AV L+ + + + P + S + + Y +K LA
Sbjct: 699 LRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLA 758
Query: 840 LVTAARTH*KYFMAHTI 856
++ + + H ++++ TI
Sbjct: 759 IIKSLK-HWRHYLESTI 774
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 58.5 bits (140), Expect = 7e-08
Identities = 36/137 (26%), Positives = 72/137 (52%), Gaps = 2/137 (1%)
Query: 721 KKCIQTLNGMLTSLFRFVAKSAQHALPFFNLLKKETKFEWTNECEKALQHLKNSLSAPPV 780
+K ++ G + L +F+ K++Q P NLLKK+ +++WT +A++++K L +PPV
Sbjct: 639 RKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPV 698
Query: 781 LSRPDEGETLYLYLSVSSEAVSGTLNIETQEGQ-KPTYFTSKALLGPETRYQKIEKVALA 839
L D + + L S AV L+ + + + P + S + + Y +K LA
Sbjct: 699 LRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLA 758
Query: 840 LVTAARTH*KYFMAHTI 856
++ + + H ++++ TI
Sbjct: 759 IIKSLK-HWRHYLESTI 774
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 58.5 bits (140), Expect = 7e-08
Identities = 36/137 (26%), Positives = 72/137 (52%), Gaps = 2/137 (1%)
Query: 721 KKCIQTLNGMLTSLFRFVAKSAQHALPFFNLLKKETKFEWTNECEKALQHLKNSLSAPPV 780
+K ++ G + L +F+ K++Q P NLLKK+ +++WT +A++++K L +PPV
Sbjct: 639 RKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPV 698
Query: 781 LSRPDEGETLYLYLSVSSEAVSGTLNIETQEGQ-KPTYFTSKALLGPETRYQKIEKVALA 839
L D + + L S AV L+ + + + P + S + + Y +K LA
Sbjct: 699 LRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLA 758
Query: 840 LVTAARTH*KYFMAHTI 856
++ + + H ++++ TI
Sbjct: 759 IIKSLK-HWRHYLESTI 774
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 57.8 bits (138), Expect = 1e-07
Identities = 32/105 (30%), Positives = 47/105 (44%)
Query: 736 RFVAKSAQHALPFFNLLKKETKFEWTNECEKALQHLKNSLSAPPVLSRPDEGETLYLYLS 795
RF+ A ++ L KK FEWT+EC+KA HLK+ L P +L PD + +
Sbjct: 562 RFIKNFADYSRHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTD 621
Query: 796 VSSEAVSGTLNIETQEGQKPTYFTSKALLGPETRYQKIEKVALAL 840
S +A L Q P + S+A E+ E+ A+
Sbjct: 622 ASKQACGAVLTQNHNGHQLPVAYASRAFTKGESNKSTTEQELAAI 666
>POL3_DROME (P04323) Retrovirus-related Pol polyprotein from
transposon 17.6 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1058
Score = 56.2 bits (134), Expect = 4e-07
Identities = 45/146 (30%), Positives = 66/146 (44%), Gaps = 5/146 (3%)
Query: 708 QMPSIYGTPYSPKKKCIQTLNGMLTSLFRFVAKSAQHALPFFNLLKKETKFEWTN-ECEK 766
++ +I P K K I+ G+ +F+ A A P LKK K + TN E +
Sbjct: 426 KIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDS 485
Query: 767 ALQHLKNSLSAPPVLSRPDEGETLYLYLSVSSEAVSGTLNIETQEGQKPTYFTSKALLGP 826
A + LK +S P+L PD + L S A+ L +Q+G P + S+ L
Sbjct: 486 AFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVL---SQDGH-PLSYISRTLNEH 541
Query: 827 ETRYQKIEKVALALVTAARTH*KYFM 852
E Y IEK LA+V A +T Y +
Sbjct: 542 EINYSTIEKELLAIVWATKTFRHYLL 567
>POL2_DROME (P20825) Retrovirus-related Pol polyprotein from
transposon 297 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1059
Score = 53.5 bits (127), Expect = 2e-06
Identities = 44/152 (28%), Positives = 66/152 (42%), Gaps = 5/152 (3%)
Query: 708 QMPSIYGTPYSPKKKCIQTLNGMLTSLFRFVAKSAQHALPFFNLLKKETKFEWTN-ECEK 766
++ +I P K K I+ G+ +F+ A A P + LKK TK + E +
Sbjct: 425 KVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIE 484
Query: 767 ALQHLKNSLSAPPVLSRPDEGETLYLYLSVSSEAVSGTLNIETQEGQKPTYFTSKALLGP 826
A + LK + P+L PD + L S+ A+ L +Q G P F S+ L
Sbjct: 485 AFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVL---SQNGH-PISFISRTLNDH 540
Query: 827 ETRYQKIEKVALALVTAARTH*KYFMAHTIAV 858
E Y IEK LA+V A +T Y + +
Sbjct: 541 ELNYSAIEKELLAIVWATKTFRHYLLGRQFLI 572
>POL_GALV (P21414) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1165
Score = 48.1 bits (113), Expect = 1e-04
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 742 AQHALPFFNLLKKETKFEWTNECEKALQHLKNSLSAPPVLSRPDEGETLYLYLSVSSEAV 801
A A P + L K+ F WT E ++A H+K +L + P L+ PD + LY+ +
Sbjct: 435 ASLAAPLYPLTKESIPFIWTEEHQQAFDHIKKALLSAPALALPDLTKPFTLYIDERAGVA 494
Query: 802 SGTLNIETQEGQKPTYFTSKAL----LGPETRYQKIEKVALALVTA 843
G L ++P + SK L G T + + VAL L A
Sbjct: 495 RGVLTQTLGPWRRPVAYLSKKLDPVASGWPTCLKAVAAVALLLKDA 540
>POL_BAEVM (P10272) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1189
Score = 46.2 bits (108), Expect = 4e-04
Identities = 25/82 (30%), Positives = 38/82 (45%)
Query: 742 AQHALPFFNLLKKETKFEWTNECEKALQHLKNSLSAPPVLSRPDEGETLYLYLSVSSEAV 801
A+ A P + L K+ T F W E + A + LK +L + P L PD + L+L
Sbjct: 436 AELAAPLYALTKESTPFTWQTEHQLAFEALKKALLSAPALGLPDTSKPFTLFLDERQGIA 495
Query: 802 SGTLNIETQEGQKPTYFTSKAL 823
G L + ++P + SK L
Sbjct: 496 KGVLTQKLGPWKRPVAYLSKKL 517
>POL_MLVFF (P26809) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 45.1 bits (105), Expect = 8e-04
Identities = 25/82 (30%), Positives = 38/82 (45%)
Query: 742 AQHALPFFNLLKKETKFEWTNECEKALQHLKNSLSAPPVLSRPDEGETLYLYLSVSSEAV 801
A+ A P + L K T FEW + +KA Q +K +L P L PD + L++
Sbjct: 443 AEMAAPLYPLTKTGTLFEWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYA 502
Query: 802 SGTLNIETQEGQKPTYFTSKAL 823
G L + ++P + SK L
Sbjct: 503 KGVLTQKLGPWRRPVAYLSKKL 524
>POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 45.1 bits (105), Expect = 8e-04
Identities = 35/129 (27%), Positives = 54/129 (41%), Gaps = 4/129 (3%)
Query: 721 KKCIQTLNGMLTSLFRFVAKSAQHALPFFNLLKKETKFEWTNECEKALQHLKNSLSAPPV 780
KK +Q G+LT ++ K AQ P LK+ ++WT E +Q +K +L P
Sbjct: 477 KKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPP 536
Query: 781 LSRPDEGETLYLYLSVSSEAVSGTLN-IETQEGQKPTY---FTSKALLGPETRYQKIEKV 836
L P E L + S + G L I+ EG + S + E Y +K
Sbjct: 537 LHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAERNYHSNDKE 596
Query: 837 ALALVTAAR 845
LA++ +
Sbjct: 597 TLAVINTIK 605
>POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 674
Score = 45.1 bits (105), Expect = 8e-04
Identities = 35/129 (27%), Positives = 54/129 (41%), Gaps = 4/129 (3%)
Query: 721 KKCIQTLNGMLTSLFRFVAKSAQHALPFFNLLKKETKFEWTNECEKALQHLKNSLSAPPV 780
KK +Q G+LT ++ K AQ P LK+ ++WT E +Q +K +L P
Sbjct: 472 KKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPP 531
Query: 781 LSRPDEGETLYLYLSVSSEAVSGTLN-IETQEGQKPTY---FTSKALLGPETRYQKIEKV 836
L P E L + S + G L I+ EG + S + E Y +K
Sbjct: 532 LHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKE 591
Query: 837 ALALVTAAR 845
LA++ +
Sbjct: 592 TLAVINTIK 600
>POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 45.1 bits (105), Expect = 8e-04
Identities = 35/129 (27%), Positives = 54/129 (41%), Gaps = 4/129 (3%)
Query: 721 KKCIQTLNGMLTSLFRFVAKSAQHALPFFNLLKKETKFEWTNECEKALQHLKNSLSAPPV 780
KK +Q G+LT ++ K AQ P LK+ ++WT E +Q +K +L P
Sbjct: 477 KKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPP 536
Query: 781 LSRPDEGETLYLYLSVSSEAVSGTLN-IETQEGQKPTY---FTSKALLGPETRYQKIEKV 836
L P E L + S + G L I+ EG + S + E Y +K
Sbjct: 537 LHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAERNYHSNDKE 596
Query: 837 ALALVTAAR 845
LA++ +
Sbjct: 597 TLAVINTIK 605
>POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 659
Score = 44.7 bits (104), Expect = 0.001
Identities = 31/139 (22%), Positives = 56/139 (39%)
Query: 721 KKCIQTLNGMLTSLFRFVAKSAQHALPFFNLLKKETKFEWTNECEKALQHLKNSLSAPPV 780
KK +Q G+LT ++ K A P + LK+++ + W + + + +K +L + P
Sbjct: 461 KKQLQRFLGILTYASDYIPKLASIRKPLQSKLKEDSTWTWNDTDSQYMAKIKKNLKSFPK 520
Query: 781 LSRPDEGETLYLYLSVSSEAVSGTLNIETQEGQKPTYFTSKALLGPETRYQKIEKVALAL 840
L P+ + L + S E G L + + S + E Y EK LA+
Sbjct: 521 LYHPEPNDKLVIETDASEEFWGGILKAIHNSHEYICRYASGSFKAAERNYHSNEKELLAV 580
Query: 841 VTAARTH*KYFMAHTIAVR 859
+ + Y +R
Sbjct: 581 IRVIKKFSIYLTPSRFLIR 599
>POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic
protease (EC 3.4.23.-); Endonuclease; Reverse
transcriptase (EC 2.7.7.49)]
Length = 679
Score = 44.7 bits (104), Expect = 0.001
Identities = 35/129 (27%), Positives = 53/129 (40%), Gaps = 4/129 (3%)
Query: 721 KKCIQTLNGMLTSLFRFVAKSAQHALPFFNLLKKETKFEWTNECEKALQHLKNSLSAPPV 780
KK +Q G+LT ++ K AQ P LK+ + WT E +Q +K +L P
Sbjct: 477 KKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWRWTKEDTLYMQKVKKNLQGFPP 536
Query: 781 LSRPDEGETLYLYLSVSSEAVSGTLN-IETQEGQKPTY---FTSKALLGPETRYQKIEKV 836
L P E L + S + G L I+ EG + S + E Y +K
Sbjct: 537 LHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKE 596
Query: 837 ALALVTAAR 845
LA++ +
Sbjct: 597 TLAVINTIK 605
>POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 43.5 bits (101), Expect = 0.002
Identities = 24/82 (29%), Positives = 38/82 (46%)
Query: 742 AQHALPFFNLLKKETKFEWTNECEKALQHLKNSLSAPPVLSRPDEGETLYLYLSVSSEAV 801
A+ A P + L K T F+W + +KA Q +K +L P L PD + L++
Sbjct: 443 AEMAAPLYPLTKTGTLFKWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYA 502
Query: 802 SGTLNIETQEGQKPTYFTSKAL 823
G L + ++P + SK L
Sbjct: 503 KGVLTQKLGPWRRPVAYLSKKL 524
>POL_MLVF5 (P26810) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1204
Score = 43.5 bits (101), Expect = 0.002
Identities = 24/82 (29%), Positives = 38/82 (46%)
Query: 742 AQHALPFFNLLKKETKFEWTNECEKALQHLKNSLSAPPVLSRPDEGETLYLYLSVSSEAV 801
A+ A P + L K T F+W + +KA Q +K +L P L PD + L++
Sbjct: 443 AEMAAPLYPLTKTGTLFKWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYA 502
Query: 802 SGTLNIETQEGQKPTYFTSKAL 823
G L + ++P + SK L
Sbjct: 503 KGVLTQKLGPWRRPVAYLSKKL 524
>POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1199
Score = 43.1 bits (100), Expect = 0.003
Identities = 24/82 (29%), Positives = 37/82 (44%)
Query: 742 AQHALPFFNLLKKETKFEWTNECEKALQHLKNSLSAPPVLSRPDEGETLYLYLSVSSEAV 801
A+ A P + L K T F W + +KA Q +K +L P L PD + L++
Sbjct: 438 AEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYA 497
Query: 802 SGTLNIETQEGQKPTYFTSKAL 823
G L + ++P + SK L
Sbjct: 498 KGVLTQKLGPWRRPVAYLSKKL 519
>POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC
3.4.23.-); Reverse transcriptase/ribonuclease H (EC
2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)]
Length = 1196
Score = 43.1 bits (100), Expect = 0.003
Identities = 24/82 (29%), Positives = 37/82 (44%)
Query: 742 AQHALPFFNLLKKETKFEWTNECEKALQHLKNSLSAPPVLSRPDEGETLYLYLSVSSEAV 801
A+ A P + L K T F W + +KA Q +K +L P L PD + L++
Sbjct: 438 AEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYA 497
Query: 802 SGTLNIETQEGQKPTYFTSKAL 823
G L + ++P + SK L
Sbjct: 498 KGVLTQKLGPWRRPVAYLSKKL 519
>POL_MLVAK (P03357) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)] (Fragment)
Length = 843
Score = 43.1 bits (100), Expect = 0.003
Identities = 24/82 (29%), Positives = 37/82 (44%)
Query: 742 AQHALPFFNLLKKETKFEWTNECEKALQHLKNSLSAPPVLSRPDEGETLYLYLSVSSEAV 801
A+ A P + L K T F W + +KA Q +K +L P L PD + L++
Sbjct: 86 AEMAAPLYPLTKTGTLFNWGPDQQKAYQEIKQALLTAPALGLPDLTKPFELFVDEKQGYA 145
Query: 802 SGTLNIETQEGQKPTYFTSKAL 823
G L + ++P + SK L
Sbjct: 146 KGVLTQKLGPWRRPVAYLSKKL 167
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.335 0.146 0.469
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,027,067
Number of Sequences: 164201
Number of extensions: 3907671
Number of successful extensions: 12502
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 12471
Number of HSP's gapped (non-prelim): 34
length of query: 859
length of database: 59,974,054
effective HSP length: 119
effective length of query: 740
effective length of database: 40,434,135
effective search space: 29921259900
effective search space used: 29921259900
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 70 (31.6 bits)
Medicago: description of AC146649.7