BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146588.13 - phase: 0
(107 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
HEM1_YARLI (Q6CCW0) 5-aminolevulinate synthase, mitochondrial pr... 30 0.78
ALKK_PSEOL (Q00594) Medium-chain-fatty-acid--CoA ligase (EC 6.2.... 30 0.78
YE1H_SCHPO (O13881) Hypothetical protein C1B3.17 in chromosome I 28 3.9
OPD1_RALSO (Q8XUX6) Glucans biosynthesis protein D 1 precursor 28 3.9
DXS_BACCR (Q818R9) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2... 28 3.9
Y697_CHLMU (Q9PJX9) Probable metal transport system ATP-binding ... 28 5.0
YDHF_LACLA (Q9CII5) Hypothetical UPF0324 membrane protein ydhF 27 6.6
RADC_BACHK (Q6HD72) DNA repair protein radC homolog 27 6.6
RADC_BACC1 (Q72ZX2) DNA repair protein radC homolog 27 6.6
RADC_BACAN (Q81LD7) DNA repair protein radC homolog 27 6.6
ACEA_ECOLI (P05313) Isocitrate lyase (EC 4.1.3.1) (Isocitrase) (... 27 6.6
>HEM1_YARLI (Q6CCW0) 5-aminolevulinate synthase, mitochondrial
precursor (EC 2.3.1.37) (5-aminolevulinic acid synthase)
(Delta-aminolevulinate synthase) (Delta-ALA synthetase)
Length = 563
Score = 30.4 bits (67), Expect = 0.78
Identities = 22/66 (33%), Positives = 33/66 (49%), Gaps = 7/66 (10%)
Query: 8 TLLSQIDAVPLFSDTAWGHKVNLDFLNKHMGA-TRSQPWRATTDPADVHSGDFLAVSKIC 66
T L ++ AV ++ T G +LDF + H GA T+ QP D D+ +G + K
Sbjct: 325 TFLDEVHAVGMYGPTGAGVAEHLDFEHYHSGAQTQRQP---IMDRVDIFTG---TLGKAY 378
Query: 67 GRWGGF 72
G GG+
Sbjct: 379 GCVGGY 384
>ALKK_PSEOL (Q00594) Medium-chain-fatty-acid--CoA ligase (EC
6.2.1.-) (Medium-chain acyl-CoA synthetase)
Length = 546
Score = 30.4 bits (67), Expect = 0.78
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 23 AWGHKVNLDFLNKHMGATRSQPWRATTDPADVHSGDFLAVS-------KICGRWGGFETL 75
A GH V D+ + G+T S W +T D A + S F+ + K G W L
Sbjct: 390 ARGHWVIKDYFHSDPGSTLSDGWFSTGDVATIDSDGFMTICDRAKDIIKSGGEWISTVEL 449
Query: 76 EKLVTA 81
E + A
Sbjct: 450 ESIAIA 455
>YE1H_SCHPO (O13881) Hypothetical protein C1B3.17 in chromosome I
Length = 537
Score = 28.1 bits (61), Expect = 3.9
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 8/91 (8%)
Query: 11 SQIDAVPLFSDT-AWGHKVNLDFLNKH-----MGATRSQPWRATTDPADVHSGDFLAVSK 64
+Q+DAV L SDT ++ + L M A +PW + P D+ + L
Sbjct: 261 NQMDAVKLISDTFVEPYQYHCKQLGNSRYYFDMAAADIEPW--SRHPLDLQKQEHLVAHS 318
Query: 65 ICGRWGGFETLEKLVTADHAAVCLKDEMGSL 95
IC W F + L D DE S+
Sbjct: 319 ICQTWNLFGIFQPLEGIDMEEPKFHDENYSI 349
>OPD1_RALSO (Q8XUX6) Glucans biosynthesis protein D 1 precursor
Length = 535
Score = 28.1 bits (61), Expect = 3.9
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 10 LSQIDAVPLFSDTAWGHKVNLDFLNKHMGATRSQPWRATTDPADVHSGDFLAVSKICGRW 69
+ ++ PL S +G D A R WRA+ ++H D LA+ + G W
Sbjct: 256 IERLGIAPLTSMFLYGENDRTDRAGDRQSAARR--WRASDWRPEIHDSDGLAIWRGSGEW 313
>DXS_BACCR (Q818R9) 1-deoxy-D-xylulose-5-phosphate synthase (EC
2.2.1.7) (1-deoxyxylulose-5-phosphate synthase) (DXP
synthase) (DXPS)
Length = 630
Score = 28.1 bits (61), Expect = 3.9
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 49 TDPADVHSGDFLAVSKICGRWGGF--ETLEKLVTADHAAVCLKDEM 92
T P + SGDF+ ++ W ET+ KL AD V + M
Sbjct: 298 TGPYKIESGDFVKPKEVAPAWSAVVSETVLKLARADERIVAITPAM 343
>Y697_CHLMU (Q9PJX9) Probable metal transport system ATP-binding
protein TC0697
Length = 236
Score = 27.7 bits (60), Expect = 5.0
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 41 RSQPWRATTDPADVHSGDFLAVSKICGRWGGFETLEKLVTADHAAVCLK 89
++ PW +VHSGDF+ + I GG TL +L+ VC K
Sbjct: 16 KTGPWIVDHVSCEVHSGDFIGI--IGPNGGGKTTLTQLMLGLLQPVCGK 62
>YDHF_LACLA (Q9CII5) Hypothetical UPF0324 membrane protein ydhF
Length = 331
Score = 27.3 bits (59), Expect = 6.6
Identities = 15/38 (39%), Positives = 21/38 (54%), Gaps = 2/38 (5%)
Query: 5 MLGTLLSQI--DAVPLFSDTAWGHKVNLDFLNKHMGAT 40
+LG +L + V LF+ TAW K L+F +GAT
Sbjct: 36 LLGIILGNLYFKQVTLFAGTAWSEKKLLEFSVMFLGAT 73
>RADC_BACHK (Q6HD72) DNA repair protein radC homolog
Length = 225
Score = 27.3 bits (59), Expect = 6.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 66 CGRWGGFETLEKLVTADHAAVCLKDE 91
CGR G E L+ ++ DH V LK++
Sbjct: 197 CGRIIGIEVLDHIIIGDHKFVSLKEK 222
>RADC_BACC1 (Q72ZX2) DNA repair protein radC homolog
Length = 225
Score = 27.3 bits (59), Expect = 6.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 66 CGRWGGFETLEKLVTADHAAVCLKDE 91
CGR G E L+ ++ DH V LK++
Sbjct: 197 CGRIIGIEVLDHIIIGDHKFVSLKEK 222
>RADC_BACAN (Q81LD7) DNA repair protein radC homolog
Length = 225
Score = 27.3 bits (59), Expect = 6.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 66 CGRWGGFETLEKLVTADHAAVCLKDE 91
CGR G E L+ ++ DH V LK++
Sbjct: 197 CGRIIGIEVLDHIIIGDHKFVSLKEK 222
>ACEA_ECOLI (P05313) Isocitrate lyase (EC 4.1.3.1) (Isocitrase)
(Isocitratase) (ICL)
Length = 434
Score = 27.3 bits (59), Expect = 6.6
Identities = 20/69 (28%), Positives = 31/69 (43%), Gaps = 8/69 (11%)
Query: 45 WRATTDPADVHSGDFL------AVSKICGRWGGFETLEKLVTADHAAVCLKDEMGSLWVG 98
W A +P D D+ A + G FE ++ ++ A AAV +D++ S V
Sbjct: 136 WSAGIEPGDPRYVDYFLPIVADAEAGFGGVLNAFELMKAMIEAGAAAVHFEDQLAS--VK 193
Query: 99 ESGHENEKV 107
+ GH KV
Sbjct: 194 KCGHMGGKV 202
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.317 0.134 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,008,955
Number of Sequences: 164201
Number of extensions: 458040
Number of successful extensions: 752
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 748
Number of HSP's gapped (non-prelim): 12
length of query: 107
length of database: 59,974,054
effective HSP length: 83
effective length of query: 24
effective length of database: 46,345,371
effective search space: 1112288904
effective search space used: 1112288904
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Medicago: description of AC146588.13