BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146588.1 - phase: 0 /pseudo
         (191 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

RRPO_OENBE (P31843) RNA-directed DNA polymerase homolog (Reverse...    33  0.52
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei...    31  2.0
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei...    31  2.0
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei...    31  2.0

>RRPO_OENBE (P31843) RNA-directed DNA polymerase homolog (Reverse
          transcriptase homolog)
          Length = 142

 Score = 32.7 bits (73), Expect = 0.52
 Identities = 17/42 (40%), Positives = 24/42 (56%)

Query: 1  RIDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFRTQ 42
          R+DDL D LA A   +K++ RS Y  ++    D PKT   T+
Sbjct: 28 RVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKTTCVTR 69


>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
           type 3
          Length = 1333

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 13/39 (33%), Positives = 24/39 (61%)

Query: 2   IDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFR 40
           I+ L+  + G+ + +K++ +S YH I+ +  D  K AFR
Sbjct: 485 IEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFR 523


>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
           type 2
          Length = 1333

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 13/39 (33%), Positives = 24/39 (61%)

Query: 2   IDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFR 40
           I+ L+  + G+ + +K++ +S YH I+ +  D  K AFR
Sbjct: 485 IEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFR 523


>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
           type 1
          Length = 1333

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 13/39 (33%), Positives = 24/39 (61%)

Query: 2   IDDLMDHLAGACVISKIEFRSRYH*IQAKLEDLPKTAFR 40
           I+ L+  + G+ + +K++ +S YH I+ +  D  K AFR
Sbjct: 485 IEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFR 523


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.365    0.164    0.594 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,662,830
Number of Sequences: 164201
Number of extensions: 498176
Number of successful extensions: 2162
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2155
Number of HSP's gapped (non-prelim): 7
length of query: 191
length of database: 59,974,054
effective HSP length: 104
effective length of query: 87
effective length of database: 42,897,150
effective search space: 3732052050
effective search space used: 3732052050
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 62 (28.5 bits)