BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146585.11 + phase: 0 
         (308 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

HET1_PODAN (Q00808) Vegetatible incompatibility protein HET-E-1        30  7.6
CMF1_BACSU (P39145) ComF operon protein 1                              30  7.6
STA2_MOUSE (Q9WVL2) Signal transducer and activator of transcrip...    30  9.9

>HET1_PODAN (Q00808) Vegetatible incompatibility protein HET-E-1
          Length = 1356

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 4/55 (7%)

Query: 31  KGIIRLYEQVYLRAPTQDDLQRILHVSEMRGFPGMIGSIDCMHWEWKNCPKAWEG 85
           K  ++ Y    + APT   +++I    E    PG I +I  +  EW  C +  EG
Sbjct: 789 KAPLQAYTSALVFAPTDSMIKKIFKKEE----PGWISTISVVEAEWNACTQTLEG 839


>CMF1_BACSU (P39145) ComF operon protein 1
          Length = 463

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 11/36 (30%), Positives = 21/36 (57%), Gaps = 1/36 (2%)

Query: 76  WKNCPKAWEGQFTRGDKGTTTVILEAVA-SHDLWIW 110
           WK+    W+G+ + G +    V++EA++   +L IW
Sbjct: 110 WKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIW 145


>STA2_MOUSE (Q9WVL2) Signal transducer and activator of
           transcription 2
          Length = 923

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 236 VEDERDTYAQRWTDFEQSEGSGSSTQQPYSTEVLPTFANHV-RARSELRD 284
           ++DE+D ++ R+T F   + S S   Q     V+   AN V R R E+ D
Sbjct: 165 LKDEQDVFSFRYTVFSLKKTSSSDPHQSQQAHVVQATANKVDRMRKEVLD 214


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.324    0.139    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,590,789
Number of Sequences: 164201
Number of extensions: 1631816
Number of successful extensions: 2961
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2961
Number of HSP's gapped (non-prelim): 3
length of query: 308
length of database: 59,974,054
effective HSP length: 110
effective length of query: 198
effective length of database: 41,911,944
effective search space: 8298564912
effective search space used: 8298564912
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 65 (29.6 bits)