BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146584.2 - phase: 0 /pseudo
         (1452 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei...    37  0.51
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei...    37  0.51
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei...    37  0.51
PCP_BACC1 (Q735N6) Pyrrolidone-carboxylate peptidase (EC 3.4.19....    33  4.4
AT7B_SHEEP (Q9XT50) Copper-transporting ATPase 2 (EC 3.6.3.4) (C...    32  9.7

>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
            type 3
          Length = 1333

 Score = 36.6 bits (83), Expect = 0.51
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 1330 PKFIGPYQILERVGTVAYRVGLPPHLSNL-HNVFHVSQLRKY 1370
            P F GP+ +L++ G   Y + LP  + ++  + FHVS L KY
Sbjct: 1216 PSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257


>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
            type 2
          Length = 1333

 Score = 36.6 bits (83), Expect = 0.51
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 1330 PKFIGPYQILERVGTVAYRVGLPPHLSNL-HNVFHVSQLRKY 1370
            P F GP+ +L++ G   Y + LP  + ++  + FHVS L KY
Sbjct: 1216 PSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257


>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
            type 1
          Length = 1333

 Score = 36.6 bits (83), Expect = 0.51
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 1330 PKFIGPYQILERVGTVAYRVGLPPHLSNL-HNVFHVSQLRKY 1370
            P F GP+ +L++ G   Y + LP  + ++  + FHVS L KY
Sbjct: 1216 PSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257


>PCP_BACC1 (Q735N6) Pyrrolidone-carboxylate peptidase (EC 3.4.19.3)
            (5-oxoprolyl-peptidase) (Pyroglutamyl-peptidase I)
            (PGP-I) (Pyrase)
          Length = 215

 Score = 33.5 bits (75), Expect = 4.4
 Identities = 29/117 (24%), Positives = 51/117 (42%), Gaps = 20/117 (17%)

Query: 1311 FESHSYDRCRTCFEV-KEVDPKFIGPYQILERVGTVAYRVGLPPHLSNLHNVFH--VSQL 1367
            F+    +     +EV K +  K IG Y+I+ +                +  VFH  +S L
Sbjct: 9    FDPFGGENINPAWEVAKNLHEKTIGEYKIISK---------------QVPTVFHKSISVL 53

Query: 1368 RKYVPD--PSHVIQSDDVQVRDNLTVETLPVRIDDRKVKTLRGKEIPLVRVVWTGAT 1422
            ++Y+ +  P  +I       R ++T+E + + IDD ++    G +   V VV  G T
Sbjct: 54   KEYIEELAPEFIICIGQAGGRPDITIERVAINIDDARIADNEGNQPVDVPVVEEGPT 110


>AT7B_SHEEP (Q9XT50) Copper-transporting ATPase 2 (EC 3.6.3.4) (Copper
            pump 2) (Wilson disease-associated protein homolog)
          Length = 1505

 Score = 32.3 bits (72), Expect = 9.7
 Identities = 11/42 (26%), Positives = 25/42 (59%)

Query: 1329 DPKFIGPYQILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKY 1370
            DP+ IGP  I++ +  + +R  L   + N H++ H  +++++
Sbjct: 650  DPEIIGPRDIVKLIEEIGFRASLAQRIPNAHHLDHKVEIKQW 691


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.365    0.164    0.591 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,779,670
Number of Sequences: 164201
Number of extensions: 4318310
Number of successful extensions: 21503
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 21498
Number of HSP's gapped (non-prelim): 6
length of query: 1452
length of database: 59,974,054
effective HSP length: 123
effective length of query: 1329
effective length of database: 39,777,331
effective search space: 52864072899
effective search space used: 52864072899
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 72 (32.3 bits)