BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146583.2 + phase: 0 /pseudo
(577 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YD27_SCHPO (Q10255) Hypothetical protein C56F8.07 in chromosome I 46 3e-04
DDI1_YEAST (P40087) DNA-damage inducible protein DDI1 (v-SNARE-m... 45 7e-04
YD28_SCHPO (Q10256) Hypothetical protein C56F8.08 in chromosome I 41 0.007
USO1_YEAST (P25386) Intracellular protein transport protein USO1 35 0.41
K2C8_HUMAN (P05787) Keratin, type II cytoskeletal 8 (Cytokeratin... 34 0.91
HOM3_HUMAN (Q9NSC5) Homer protein homolog 3 (Homer-3) 34 0.91
ANT1_ONCVO (P21249) Major antigen 34 1.2
YCF1_PINTH (P41647) Hypothetical 205.3 kDa protein ycf1 (ORF 1756) 33 2.0
YAF3_SCHPO (Q09857) Hypothetical protein C29E6.03c in chromosome I 33 2.0
WTAP_MOUSE (Q9ER69) Wilms' tumor 1-associating protein (WT1-asso... 33 2.0
WTAP_HUMAN (Q15007) Wilms' tumor 1-associating protein (WT1-asso... 33 2.0
RPCA_CHLRE (Q8HUG9) DNA-directed RNA polymerase beta' chain N-te... 33 2.0
RPC2_SYNEL (Q8DL57) DNA-directed RNA polymerase beta' chain (EC ... 33 2.0
MYSC_CHICK (P29616) Myosin heavy chain, cardiac muscle isoform (... 33 2.0
LMG1_MOUSE (P02468) Laminin gamma-1 chain precursor (Laminin B2 ... 33 2.0
CCA_SCHMA (O02197) Circulating cathodic antigen (CCA) 33 2.0
SCP1_MESAU (Q60563) Synaptonemal complex protein 1 (SCP-1 protei... 33 2.7
RA50_YEAST (P12753) DNA repair protein RAD50 (153 kDa protein) 33 2.7
NRP3_HUMAN (Q9NQ35) Nuclear receptor interacting protein 3 (Sarc... 33 2.7
K2C7_HUMAN (P08729) Keratin, type II cytoskeletal 7 (Cytokeratin... 33 2.7
>YD27_SCHPO (Q10255) Hypothetical protein C56F8.07 in chromosome I
Length = 507
Score = 45.8 bits (107), Expect = 3e-04
Identities = 56/240 (23%), Positives = 101/240 (41%), Gaps = 15/240 (6%)
Query: 324 AISLGGNKLEDTITKAKSVKGESVKLLGEKDAIKTLLDKNKALNPLRL------TKLNLE 377
AI +GG +L + AKS G S + +K+ +T+L LN +R LN
Sbjct: 156 AIDMGG-RLVKSCHAAKS--GPSSTITSKKNIRQTILATPFLLNRIRTEFPQLAAVLNDP 212
Query: 378 AQFAK-FLNILKRICIKIPFGEALSRMPLYTKF-LKEIFSKKKAMDHKETIALTRESSAI 435
FA + +I ++IP MP +++ L ++ +++ + A+T +
Sbjct: 213 NAFATTWQSINASQLLQIPSSTYSMGMPSFSEDDLFDVEVQRRIEEQIRQNAVTENMQSA 272
Query: 436 VKKQPPKLRDPGSFVIPCVIGKETVDKALCDLGASVSLLPLSLFKRMGIGELKPTEMILK 495
++ P + I V KA D GA ++L ++ G+ L T
Sbjct: 273 IENHPEVFGQVYMLFVNVEINGHKV-KAFVDSGAQATILSADCAEKCGLTRLLDTRFQGV 331
Query: 496 LADRSTIPLVGYIEDIPVKIEGIYIPTDFVVVDIEEDHDVPIILGRPFLATAGAIVDVQS 555
++G + P+KI +Y+P F V+ E DV ++LG L A +D+++
Sbjct: 332 AKGVGMAKILGCVHSAPLKIGDLYLPCRFTVI---EGRDVDMLLGLDMLRRYQACIDLEN 388
>DDI1_YEAST (P40087) DNA-damage inducible protein DDI1
(v-SNARE-master 1)
Length = 428
Score = 44.7 bits (104), Expect = 7e-04
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 462 KALCDLGASVSLLPLSLFKRMGIGELKPTEMILKLADRSTIPLVGYIEDIPVKIEGIYIP 521
KA D GA +++ L K+ G+ + I + T ++G I VKIE YIP
Sbjct: 216 KAFVDTGAQTTIMSTRLAKKTGLSRMIDKRFIGEARGVGTGKIIGRIHQAQVKIETQYIP 275
Query: 522 TDFVVVDIEEDHDVPIILGRPFLATAGAIVDVQ 554
F V+D D+ +++G L A VD++
Sbjct: 276 CSFTVLDT----DIDVLIGLDMLKRHLACVDLK 304
>YD28_SCHPO (Q10256) Hypothetical protein C56F8.08 in chromosome I
Length = 332
Score = 41.2 bits (95), Expect = 0.007
Identities = 35/165 (21%), Positives = 69/165 (41%), Gaps = 5/165 (3%)
Query: 392 IKIPFGEALSRMPLYTKF-LKEIFSKKKAMDHKETIALTRESSAIVKKQPPKLRDPGSFV 450
++IP MP +++ L ++ +++ + A+T + ++ P
Sbjct: 53 LQIPSSTYSMGMPSFSEDDLFDVEVQRRIEEQIRQNAVTENMQSAIENHPEVFGQVYMLF 112
Query: 451 IPCVIGKETVDKALCDLGASVSLLPLSLFKRMGIGELKPTEMILKLADRSTIPLVGYIED 510
+ I V KA D GA ++L ++ G+ L T ++G +
Sbjct: 113 VNVEINGHKV-KAFVDSGAQATILSADCAEKCGLTRLLDTRFQGVAKGVGMAKILGCVHS 171
Query: 511 IPVKIEGIYIPTDFVVVDIEEDHDVPIILGRPFLATAGAIVDVQS 555
P+KI +Y+P F V+ E DV ++LG L A +D+++
Sbjct: 172 APLKIGDLYLPCRFTVI---EGRDVDMLLGLDMLRRYQACIDLEN 213
>USO1_YEAST (P25386) Intracellular protein transport protein USO1
Length = 1790
Score = 35.4 bits (80), Expect = 0.41
Identities = 47/223 (21%), Positives = 86/223 (38%), Gaps = 33/223 (14%)
Query: 232 TNNQRVAQKSSLEILLENCMMNQNKQLQELKNQTGSLNDSLSKLNTKVDSIATHTKMLET 291
T+ + + + E L+ + K+ E K Q SL +L L + + +A K E
Sbjct: 1107 TSEKALKEVKENEEHLKEEKIQLEKEATETKQQLNSLRANLESLEKEHEDLAAQLKKYEE 1166
Query: 292 QISQVAQQVAISS*TPGVFPGQTETNPKAHVNAISLGGNKLEDTITKAKSVKGESVKLLG 351
QI+ +Q + IS +++ T + +S+K ++ +L G
Sbjct: 1167 QIANKERQ---------------------YNEEISQLNDEITSTQQENESIKKKNDELEG 1205
Query: 352 EKDAIKTLLDKNKALNPLRLTKLNL---------EAQFAKFLNILKRI-CIKIPFGEALS 401
E A+K+ ++ L + LNL E A L +K + + E
Sbjct: 1206 EVKAMKSTSEEQSNLKKSEIDALNLQIKELKKKNETNEASLLESIKSVESETVKIKELQD 1265
Query: 402 RMPLYTKFLKEIFSKKKAMDHKET--IALTRESSAIVKKQPPK 442
K + E+ K KA + K + + L +ES I ++ K
Sbjct: 1266 ECNFKEKEVSELEDKLKASEDKNSKYLELQKESEKIKEELDAK 1308
Score = 33.9 bits (76), Expect = 1.2
Identities = 68/317 (21%), Positives = 121/317 (37%), Gaps = 62/317 (19%)
Query: 126 NGLSDTTKMSVDAAAGGALMNKNYTEAYALIEDMAQNHYQWTNERAVTTPTPSKKEAGIH 185
N +T + D AA TE A+ E++ + Q N +KE
Sbjct: 896 NHQKETKSLKEDIAA-------KITEIKAINENLEEMKIQCNN-------LSKEKEHISK 941
Query: 186 EVSEYNHLAAKVEQLNYAQYKQGMRPNQNFYKNPQGSYGQTAPPGYTNNQRVAQKSSLEI 245
E+ EY + L A+ + ++ N YK+ Q A+ SL
Sbjct: 942 ELVEYKSRFQSHDNL-VAKLTEKLKSLANNYKDMQ-----------------AENESLIK 983
Query: 246 LLENCMMNQNKQLQELKNQTGSLNDSLSKLNTKVDSIATHTKMLETQISQVAQQVAISS* 305
+E + QL L+N+ S++ + SI + + L+ IS + Q
Sbjct: 984 AVEESKNESSIQLSNLQNKIDSMSQEKENFQIERGSIEKNIEQLKKTISDLEQ------- 1036
Query: 306 TPGVFPGQTETNPKAHVNAISLGGNKLEDTITKAKSVKGESVKLLGEKDAIKTLLDKNKA 365
T +++++ + + ISL KLE A + E+V + E
Sbjct: 1037 TKEEIISKSDSSKDEYESQISLLKEKLE----TATTANDENVNKISE------------- 1079
Query: 366 LNPLRLTKLNLEAQFAKFLNILKRICIKIPFGE-ALSRMPLYTKFLKE--IFSKKKAMDH 422
L T+ LEA+ A + N+ + K+ E AL + + LKE I +K+A +
Sbjct: 1080 ---LTKTREELEAELAAYKNLKNELETKLETSEKALKEVKENEEHLKEEKIQLEKEATET 1136
Query: 423 KETIALTRESSAIVKKQ 439
K+ + R + ++K+
Sbjct: 1137 KQQLNSLRANLESLEKE 1153
>K2C8_HUMAN (P05787) Keratin, type II cytoskeletal 8 (Cytokeratin 8)
(K8) (CK 8)
Length = 482
Score = 34.3 bits (77), Expect = 0.91
Identities = 55/191 (28%), Positives = 74/191 (37%), Gaps = 24/191 (12%)
Query: 212 NQNFYKNPQGSYGQTAPPGYTNNQRVAQKSSLEILLENCMMNQNKQLQELKNQTGSLNDS 271
+ NF G YG + G V Q ++LE Q + QE K Q +LN+
Sbjct: 42 SSNFRGGLGGGYGGASGMGGITAVTVNQSLLSPLVLEVDPNIQAVRTQE-KEQIKTLNNK 100
Query: 272 LSKLNTKVDSIATHTKMLETQISQVAQQVAISS*TPGVFPG-------QTET--NPKAHV 322
+ KV + KMLET+ S + QQ S +F Q ET K +
Sbjct: 101 FASFIDKVRFLEQQNKMLETKWSLLQQQKTARSNMDNMFESYINNLRRQLETLGQEKLKL 160
Query: 323 NAISLGG---------NKLEDTITKAKSVKGESVKLLGEKDAIKTLLDKNKALNPLRLTK 373
A LG NK ED I K ++ E V L +KD + + NK RL
Sbjct: 161 EA-ELGNMQGLVEDFKNKYEDEINKRTEMENEFV--LIKKDVDEAYM--NKVELESRLEG 215
Query: 374 LNLEAQFAKFL 384
L E F + L
Sbjct: 216 LTDEINFLRQL 226
>HOM3_HUMAN (Q9NSC5) Homer protein homolog 3 (Homer-3)
Length = 361
Score = 34.3 bits (77), Expect = 0.91
Identities = 34/144 (23%), Positives = 60/144 (41%), Gaps = 11/144 (7%)
Query: 155 LIEDMAQNHYQWTNERAVTTPTPSKKEAGIHEVSEYNHLAAKVEQLNYAQYKQGMRPNQN 214
++ + + QW E + +K + E N AA+ Q AQ + R Q
Sbjct: 174 MLSEGSVGEVQWEAEFFALQDSNNKLAGALREA---NAAAAQWRQQLEAQRAEAERLRQR 230
Query: 215 FYKNPQGSYGQTAPPGYTNNQRVAQKSSLEILLENCMMNQNKQLQELKNQTGSLNDSL-- 272
+ + + P G + + Q SLE LE + +++++Q LK+QTG ++L
Sbjct: 231 VAELEAQAASEVTPTG--EKEGLGQGQSLE-QLEALVQTKDQEIQTLKSQTGGPREALEA 287
Query: 273 ---SKLNTKVDSIATHTKMLETQI 293
+ KV + T LE Q+
Sbjct: 288 AEREETQQKVQDLETRNAELEHQL 311
>ANT1_ONCVO (P21249) Major antigen
Length = 2022
Score = 33.9 bits (76), Expect = 1.2
Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 14/136 (10%)
Query: 231 YTNNQRVAQKSSLEILLENCMMNQNK-QLQELKNQTGSLNDSLSKLNTKVDSIATHTKML 289
Y + + A ++ +++L N+ K QL +++ SLN ++ K+ + L
Sbjct: 1031 YNTDLQTAARNEIKLLTPT--NNEMKSQLNAAEDKINSLNKVITDQQNKIRDLTGEVHHL 1088
Query: 290 ETQISQVAQQVAISS*TPGVFPGQTETNPKAHVNAISLGGNKLEDTITKAKSVKGESVKL 349
E ++ VA E+ I L G + T+ +KG+ L
Sbjct: 1089 EGELKDAKGNVA-----------NLESELDTTRERIHLLGEQNASLQTELNKIKGDIDSL 1137
Query: 350 LGEKDAIKTLLDKNKA 365
GE D +KT + N+A
Sbjct: 1138 FGENDMLKTAKESNEA 1153
>YCF1_PINTH (P41647) Hypothetical 205.3 kDa protein ycf1 (ORF 1756)
Length = 1756
Score = 33.1 bits (74), Expect = 2.0
Identities = 32/115 (27%), Positives = 43/115 (36%), Gaps = 17/115 (14%)
Query: 307 PGVFPGQTETNPKAHVNAISLGGNKLEDTITKAKSVKGESVKLLGEKDAIKTLLDKNKAL 366
P + E + HV S G E T +G +KLL K ++
Sbjct: 846 PEFYKDWEEMRREMHVICASDGTELSETTFPDKWETQGMQIKLLFPFRLKPWHRSKPQSA 905
Query: 367 NPLR---LTKLNLEAQFAKFLNILKRICIKIPFGEALSRMPLYTKFLKEIFSKKK 418
LR LT LE IPFG+ S + +++KFLK IF K K
Sbjct: 906 KRLRWSYLTTFGLETD--------------IPFGDPTSNLGIFSKFLKPIFKKVK 946
>YAF3_SCHPO (Q09857) Hypothetical protein C29E6.03c in chromosome I
Length = 1044
Score = 33.1 bits (74), Expect = 2.0
Identities = 30/138 (21%), Positives = 60/138 (42%), Gaps = 9/138 (6%)
Query: 234 NQRVAQKSSLEILLENCMMNQNKQLQELKNQTGSLNDSLSKLNTKVDSIATHTKMLETQI 293
N + K ++ L+N + ++ +LQEL++Q + + LN ++ + A +E+
Sbjct: 791 NDNLGNKENIISDLKNKLSEESTRLQELQSQLNQDKNQIETLNERISAAADELSSMESIN 850
Query: 294 SQVAQQVAISS*TPGVFPGQTETN-----PKAHVNAISLGGNKLEDTITKAKSVKGESVK 348
A ++ ++ Q + N K H IS LE A ++ E
Sbjct: 851 KNQANELKLAKQKCSNL--QEKINFGNKLAKEHTEKISSLEKDLEAATKTASTLSKELKT 908
Query: 349 LLGEKDAIKTLL--DKNK 364
+ E D++K++ D+NK
Sbjct: 909 VKSENDSLKSVSNDDQNK 926
>WTAP_MOUSE (Q9ER69) Wilms' tumor 1-associating protein
(WT1-associated protein) (Putative pre-mRNA splicing
regulator female-lethal(2D) homolog)
Length = 396
Score = 33.1 bits (74), Expect = 2.0
Identities = 17/55 (30%), Positives = 32/55 (57%)
Query: 247 LENCMMNQNKQLQELKNQTGSLNDSLSKLNTKVDSIATHTKMLETQISQVAQQVA 301
LE + Q K +ELK+ LND + +L+ +V+ + + +L+ Q+ + QQ+A
Sbjct: 183 LEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETRQQLA 237
>WTAP_HUMAN (Q15007) Wilms' tumor 1-associating protein
(WT1-associated protein) (Putative pre-mRNA splicing
regulator female-lethal(2D) homolog)
Length = 396
Score = 33.1 bits (74), Expect = 2.0
Identities = 17/55 (30%), Positives = 32/55 (57%)
Query: 247 LENCMMNQNKQLQELKNQTGSLNDSLSKLNTKVDSIATHTKMLETQISQVAQQVA 301
LE + Q K +ELK+ LND + +L+ +V+ + + +L+ Q+ + QQ+A
Sbjct: 183 LEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETRQQLA 237
>RPCA_CHLRE (Q8HUG9) DNA-directed RNA polymerase beta' chain
N-terminal subunit (EC 2.7.7.6) (PEP) (Plastid-encoded
RNA polymerase beta' N-terminal section) (RNA polymerase
beta' N-terminal section)
Length = 603
Score = 33.1 bits (74), Expect = 2.0
Identities = 36/156 (23%), Positives = 59/156 (37%), Gaps = 7/156 (4%)
Query: 223 YGQTAPPGYTNNQRVAQKSSLEILLENCMMNQNKQLQELKNQTGSLNDSLSKLNTKVDSI 282
YG + G N+Q +++ + M+ K+L L+N LN+ ++LNTK I
Sbjct: 36 YGNSPLQGL-NSQVTNLNLIRKVVAASAEMDSFKKLPNLQNNKLPLNNLKARLNTKAIYI 94
Query: 283 ATHTKMLETQISQVAQQVAISS*TPGVFPGQTETNPKAHVNAISLGGNKLEDTITKAKSV 342
+ L +S++ AI + PG H + + K
Sbjct: 95 SNEEAQL--TVSKIGTPNAIETDVPGTIKNAPSNTLLTHRSFKFFVNKIYAKPLISLKKT 152
Query: 343 KGESVKLLGEKDAIKTLLDKNKALNPLRLTKLNLEA 378
K LLG+ T K LNP + LN ++
Sbjct: 153 KETKPLLLGKTGTTLT----QKGLNPFQSLFLNTKS 184
>RPC2_SYNEL (Q8DL57) DNA-directed RNA polymerase beta' chain (EC
2.7.7.6) (RNAP beta' subunit) (Transcriptase beta'
chain) (RNA polymerase beta' subunit)
Length = 1324
Score = 33.1 bits (74), Expect = 2.0
Identities = 17/56 (30%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 516 EGIYIPTDFVVVDIEEDHDVPIILGRPFLATAGAIVDVQSGRIVFQASD-AMIGFE 570
+G+ P V+ + +DH V + L RP+L + GA++ ++ G +V + + A++ FE
Sbjct: 924 KGVTAPETAAVMAVADDH-VILRLARPYLVSPGAVLQIEEGDLVQRGDNLALLVFE 978
>MYSC_CHICK (P29616) Myosin heavy chain, cardiac muscle isoform
(Fragment)
Length = 1102
Score = 33.1 bits (74), Expect = 2.0
Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 23/225 (10%)
Query: 158 DMAQNHYQWTNERAVTTPTPSK---KEAGIHEVSEY----NHLAAKVEQLNYAQYKQGMR 210
+M+Q + + +E+A+ K +A I E+ E AKVE+ Q R
Sbjct: 252 EMSQLNSKIEDEQAIVMQLQKKIKELQARIEELEEELEAERAARAKVEK----QRSDLAR 307
Query: 211 PNQNFYKNPQGSYGQTAPPGYTNNQRVAQKSSLEILLENCMMNQN-------KQLQELKN 263
+ + +G+ G TA N +R A+ L LE ++ K+ + +
Sbjct: 308 ELEELSERLEGAGGATAAQLEMNKKREAEFLKLARDLEEATLHYEATAAALRKKHADRRG 367
Query: 264 QTGSLNDSLSKLNTKVDSIATHTKM----LETQISQVAQQVAISS*TPGVFPGQTETNPK 319
+ G D+L ++ K++ + KM L + Q + A + G + K
Sbjct: 368 EMGEQLDNLQRVKQKLEKEKSELKMEVDDLTANMEQTVKGKANAEKLWGTYEDHLNET-K 426
Query: 320 AHVNAISLGGNKLEDTITKAKSVKGESVKLLGEKDAIKTLLDKNK 364
++ ++ N L TK +S GE V+ L EK+++ + L + K
Sbjct: 427 TKLDEMTRLMNDLTTQKTKLQSENGEFVRQLEEKESLISQLSRGK 471
>LMG1_MOUSE (P02468) Laminin gamma-1 chain precursor (Laminin B2
chain)
Length = 1607
Score = 33.1 bits (74), Expect = 2.0
Identities = 47/240 (19%), Positives = 92/240 (37%), Gaps = 42/240 (17%)
Query: 145 MNKNYTEAYALIEDMAQNHYQWTNER------------AVTTPTPSKKEAGIHEVSEYNH 192
+N+ Y +A + +D+ + + E +V TP EA +E ++
Sbjct: 1230 LNRKYEQAKNISQDLEKQAARVHEEAKRAGDKAVEIYASVAQLTPVDSEALENEANKIKK 1289
Query: 193 LAAKVEQL------NYAQYKQGMRPNQNFYKN--PQGSYGQTAPPGYTNNQRVAQKSSLE 244
AA +++L +Y ++ MR ++ KN +G Q T +Q +A+ + +
Sbjct: 1290 EAADLDRLIDQKLKDYEDLREDMRGKEHEVKNLLEKGKAEQQ-----TADQLLARADAAK 1344
Query: 245 ILLENCMMNQNKQLQELKNQTGSLNDSLSKLNTKVDSIATHTKMLETQISQVAQQVAISS 304
L E LQE + +L D ++N +T + +++
Sbjct: 1345 ALAEEAAKKGRSTLQEANDILNNLKDFDRRVNDN-----------KTAAEEALRRI---- 1389
Query: 305 *TPGVFPGQTETNPKAHVNAISLGGNKLEDTITKAKSVKGESVKLLGEKDAIKTLLDKNK 364
P + E N K ++LG + T K K+ + E + +K+A T D +
Sbjct: 1390 --PAINRTIAEANEKTREAQLALGNAAADATEAKNKAHEAERIASAVQKNATSTKADAER 1447
>CCA_SCHMA (O02197) Circulating cathodic antigen (CCA)
Length = 347
Score = 33.1 bits (74), Expect = 2.0
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 6/57 (10%)
Query: 250 CMMNQNKQLQELKNQTGSLNDSLSKLNTKVDSIATH-----TKMLET-QISQVAQQV 300
C+ +NKQL++LK + +L +SL + T +D I T +K++ T Q+ + Q V
Sbjct: 77 CLAAENKQLEQLKIENKTLRNSLDEHQTALDMIMTKYRGQISKLMRTYQVEHLVQSV 133
>SCP1_MESAU (Q60563) Synaptonemal complex protein 1 (SCP-1 protein)
(Meiotic chromosome synaptic protein) (Fragment)
Length = 845
Score = 32.7 bits (73), Expect = 2.7
Identities = 42/202 (20%), Positives = 86/202 (41%), Gaps = 30/202 (14%)
Query: 253 NQNKQLQELKNQTGSLNDSLSKLNTKVDSIATHTKMLETQISQVAQQVAISS*TPGVFPG 312
N++K ++EL + +L S + ++++ L+ ++ Q+ F
Sbjct: 484 NKSKYIEELHQENKALKKKSSAESKQLNAYEIKVNKLQLELESAKQK----------FQE 533
Query: 313 QTETNPKAHVNAISLGGNKLEDTITKAKSVKGESVKLLGEKD--------AIKTLLDKNK 364
T+ N + + + KL + KAK++ E+VKL E D + L++K+K
Sbjct: 534 MTD-NYQKEIEVKKISEEKLLGEVEKAKAMVDEAVKLQKEIDLRCQHKIAEMVALMEKHK 592
Query: 365 ALNPLRLTKLNLEAQFAKFLNILKRICIKIPFGEALSRMPLYTKFLKEIFSKKKAM---- 420
+ + + E K +++ +K LS + E+ S KK +
Sbjct: 593 HQYDKIVEERDSELGLCKNRE-QEQLSVKTALETELSNI------RNELVSLKKQLEIER 645
Query: 421 DHKETIALTRESSAIVKKQPPK 442
+ KE + L +E++AI+K + K
Sbjct: 646 EEKEKLKLEKENTAILKDKKDK 667
>RA50_YEAST (P12753) DNA repair protein RAD50 (153 kDa protein)
Length = 1312
Score = 32.7 bits (73), Expect = 2.7
Identities = 41/206 (19%), Positives = 89/206 (42%), Gaps = 7/206 (3%)
Query: 242 SLEILLENCMMNQNKQLQELKNQTGSLNDSLSKLNTKVDSIATHTKMLETQISQVAQQVA 301
S E+ + N + + + EL++Q +NDSL +L + + + S++ +
Sbjct: 817 SEELSIYNTSEDGIQTVDELRDQQRKMNDSLRELRKTISDLQMEKDEKVRENSRMINLIK 876
Query: 302 ISS*TPGVFPGQTETNPKAHV-NAISLGGNKLEDTITKAKSVKGESVKLLGEKDAIKTLL 360
T V ++ K ++ ++I + D ++ K ++ + L +KD +++L
Sbjct: 877 EKELT--VSEIESSLTQKQNIDDSIRSKRENINDIDSRVKELEARIISLKNKKDEAQSVL 934
Query: 361 DKNKALNPLRL-TKLNLEAQFAKFLNILKRICIKIPFGEALSRMPLYTKFLKEIFSKKKA 419
DK K +++ K A + ++ + I ++ EA L T + +K +
Sbjct: 935 DKVKNERDIQVRNKQKTVADINRLIDRFQTIYNEVVDFEAKGFDELQTTIKELELNKAQM 994
Query: 420 MDHKETIALTRESSAIVKKQPPKLRD 445
++ KE + L S V ++ KL D
Sbjct: 995 LELKEQLDL---KSNEVNEEKRKLAD 1017
>NRP3_HUMAN (Q9NQ35) Nuclear receptor interacting protein 3 (Sarcoma
antigen NY-SAR-105)
Length = 241
Score = 32.7 bits (73), Expect = 2.7
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 442 KLRDPGSFVIPCVIGKETVDKALCDLGASVSLLPLSLFKRMGIGELKPTEMI--LKLADR 499
K + ++ C + V KAL D G +L+ L+ R+G+ E + KL+
Sbjct: 101 KSEEDDMILVSCQCAGKDV-KALVDTGCLYNLISLACVDRLGLKEHVKSHKHEGEKLSLP 159
Query: 500 STIPLVGYIEDIPVKIEGIYIPTDFVVVDIEEDHDVPIILGRPFLATAGAIVDVQSGRIV 559
+ +VG IE + + + + + VVD D++ + LG L + I+++ R++
Sbjct: 160 RHLKVVGQIEHLVITLGSLRLDCPAAVVD---DNEKNLSLGLQTLRSLKCIINLDKHRLI 216
Query: 560 FQASD 564
+D
Sbjct: 217 MGKTD 221
>K2C7_HUMAN (P08729) Keratin, type II cytoskeletal 7 (Cytokeratin 7)
(K7) (CK 7) (Sarcolectin)
Length = 468
Score = 32.7 bits (73), Expect = 2.7
Identities = 37/146 (25%), Positives = 59/146 (40%), Gaps = 24/146 (16%)
Query: 259 QELKNQTGSLNDSLSKLNTKVDSIATHTKMLETQISQVAQQ-VAISS*TPGVFPGQTETN 317
QE Q +LN+ + KV + K+LET+ + + +Q A SS P +F Q
Sbjct: 88 QEESEQIKTLNNKFASFIDKVRFLEQQNKLLETKWTLLQEQKSAKSSRLPDIFEAQI-AG 146
Query: 318 PKAHVNAISLGG------------------NKLEDTITKAKSVKGESVKLLGEKDAIKTL 359
+ + A+ + G NK ED I + + + E V L + DA
Sbjct: 147 LRGQLEALQVDGGRLEQGLRTMQDVVEDFKNKYEDEINRRTAAENEFVVLKKDVDAAY-- 204
Query: 360 LDKNKALNPLRLTKLNLEAQFAKFLN 385
+K ++ LN E F + LN
Sbjct: 205 --MSKVELEAKVDALNDEINFLRTLN 228
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.317 0.134 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,936,240
Number of Sequences: 164201
Number of extensions: 2740492
Number of successful extensions: 8572
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 8533
Number of HSP's gapped (non-prelim): 74
length of query: 577
length of database: 59,974,054
effective HSP length: 116
effective length of query: 461
effective length of database: 40,926,738
effective search space: 18867226218
effective search space used: 18867226218
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 69 (31.2 bits)
Medicago: description of AC146583.2