BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146574.11 + phase: 0 /pseudo
(738 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DICE_ARATH (Q9SP32) Endoribonuclease Dicer homolog (EC 3.1.26.-)... 39 0.038
MYCN_XENLA (P24793) N-myc protein 35 0.55
MST2_DROHY (Q08696) Axoneme-associated protein mst101(2) 35 0.55
GOA3_MOUSE (P55937) Golgi autoantigen, golgin subfamily A member... 35 0.55
RA50_SULAC (O33600) DNA double-strand break repair rad50 ATPase 33 2.1
ATRX_CAEEL (Q9U7E0) Transcriptional regulator ATRX homolog (X-li... 33 2.7
Y075_MYCGE (P47321) Hypothetical protein MG075 33 3.5
SNE2_HUMAN (Q8WXH0) Nesprin 2 (Nuclear envelope spectrin repeat ... 33 3.5
SBCC_CLOAB (Q97FK1) Nuclease sbcCD subunit C 33 3.5
LMA3_MOUSE (Q61789) Laminin alpha-3 chain precursor (Nicein alph... 33 3.5
ZF37_HUMAN (Q9Y6Q3) Zinc finger protein 37 homolog (Zfp-37) 32 4.6
XPC_DROME (Q24595) DNA-repair protein complementing XP-C cells h... 32 4.6
VA11_VARV (P33836) Protein A11 32 4.6
ILVD_HAEIN (P44851) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD) 32 4.6
Z184_HUMAN (Q99676) Zinc finger protein 184 32 6.0
VA11_VACCC (P20988) Protein A11 32 6.0
PAM_STRPY (P49054) Plasminogen-binding group A steptococcal M-li... 32 6.0
MUD2_YEAST (P36084) Splicing factor MUD2 32 6.0
KSG1_SCHPO (Q12701) Serine/threonine-protein kinase ksg1 (EC 2.7... 32 7.9
DME_ARATH (Q8LK56) Transcriptional activator DEMETER (DNA glycos... 32 7.9
>DICE_ARATH (Q9SP32) Endoribonuclease Dicer homolog (EC 3.1.26.-)
(CARPEL FACTORY protein) (SHORT INTEGUMENTS 1 protein)
(SUSPENSOR1 protein)
Length = 1909
Score = 39.3 bits (90), Expect = 0.038
Identities = 45/152 (29%), Positives = 67/152 (43%), Gaps = 15/152 (9%)
Query: 592 SSNKNLEKIQTFIASKGTILSQTALNALIRK---RNALALQQRAIEDEMAVCNMK-IHRW 647
S + N ++ FI ++Q + +K RNALA + E E+A K I+
Sbjct: 1754 SRSGNTATVEVFIDGVQVGVAQNPQKKMAQKLAARNALAALK---EKEIAESKEKHINNG 1810
Query: 648 LAGEEDDFELKLESVIEGCNGTWLRKLDGICHENNWILPTYSVSLSDGEFHAT-----VR 702
AGE D E + + G + L+ IC NW +P+Y G HA VR
Sbjct: 1811 NAGE-DQGENENGNKKNGHQPFTRQTLNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVR 1869
Query: 703 VKGVDFEYS--CEGNTCPFPREARDSAAAQML 732
V D ++ C G P ++A+DSAA +L
Sbjct: 1870 VNTSDRGWTDECIGEPMPSVKKAKDSAAVLLL 1901
>MYCN_XENLA (P24793) N-myc protein
Length = 437
Score = 35.4 bits (80), Expect = 0.55
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 539 SNECTRPSKAEKAVSKRKHITEGGIKDQSAFDKICAGTTFENDSVEKCILNANSSNKNLE 598
+ CT+P + + + H +D+ ++ + +VEK NSSNK++
Sbjct: 212 ARNCTQPCTSSSSSGEESHSESDDDEDEEEEEEDDEEEEIDVVTVEK---RRNSSNKSVT 268
Query: 599 KIQTFIASKGTIL--SQTALNALIRKRNALALQQ 630
+ + K TIL S+TA N +I KR A QQ
Sbjct: 269 SLTITVRPKNTILVSSKTAQNEVILKRCAPVHQQ 302
>MST2_DROHY (Q08696) Axoneme-associated protein mst101(2)
Length = 1391
Score = 35.4 bits (80), Expect = 0.55
Identities = 41/198 (20%), Positives = 72/198 (35%), Gaps = 34/198 (17%)
Query: 436 QDSKLAEKQFPKHEVTESHVSSKGLYIDLDNKPGSDTKVALNQKEKNGCGITKRCDSVKE 495
+ K AE + E TE ++ + + K A K + K+C
Sbjct: 1140 EKKKCAEAAKKEKEATEKQKCAEAA--KKEKEAAEKKKCAEAAKREKEAAQKKKC----- 1192
Query: 496 DWDMDVDKSLVLPSKNKECQKHTANTLHISEDQKIENPSVQHHSNECTRPSKAEKAVSKR 555
D+ K P++ K+C++ +E QK C + +K EK +++
Sbjct: 1193 ---ADLAKKEQEPAEMKKCEEAAKKEKEAAEKQK------------CAKAAKKEKEAAEK 1237
Query: 556 KHITEGGIKDQSAFDKICAGTTFENDSVEKCILNANSSNKNLEKIQTFIASKGTILSQTA 615
K E K+Q A +K +KC A + +K + A K L +
Sbjct: 1238 KKCAEAAKKEQEAAEK------------KKCAEAAKKEKEAEKKRKCEKAEKAAALKRQC 1285
Query: 616 LNALIRKRNALALQQRAI 633
+IR + A ++ AI
Sbjct: 1286 AKLVIRAKEAALRKKCAI 1303
>GOA3_MOUSE (P55937) Golgi autoantigen, golgin subfamily A member 3
(Golgin-160) (Male-enhanced antigen-2) (MEA-2)
Length = 1447
Score = 35.4 bits (80), Expect = 0.55
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 2/111 (1%)
Query: 526 EDQKIENPSVQHHSNECTRPSKAEKA-VSKRKHITEGGIKDQ-SAFDKICAGTTFENDSV 583
E K+EN S+ H E S EK ++ + E + DQ +AF +I T + +
Sbjct: 567 EHLKLENVSLSHQLTETQHRSIKEKERIAVQLQSIEADMLDQEAAFVQIREAKTMVEEDL 626
Query: 584 EKCILNANSSNKNLEKIQTFIASKGTILSQTALNALIRKRNALALQQRAIE 634
++ + + L+K+ AS L Q L R + ALQQ ++
Sbjct: 627 QRRLEEFEGEREQLQKVADAAASLEQQLEQVKLTLFQRDQQLAALQQEHLD 677
>RA50_SULAC (O33600) DNA double-strand break repair rad50 ATPase
Length = 886
Score = 33.5 bits (75), Expect = 2.1
Identities = 44/172 (25%), Positives = 75/172 (43%), Gaps = 11/172 (6%)
Query: 473 KVALNQKEKNGCGITKRCDSV--KEDWDMDVDKSLVLPSKNKECQKHTANTLHISEDQKI 530
K L +KEK I KR + KE +++K L KN E QK+ L+ + Q +
Sbjct: 328 KKELEEKEKQYEEIEKRKKELEEKEKQYEEIEKRLTYVLKNIERQKNEIEKLNYVDTQDL 387
Query: 531 ENPSVQHHSNECTRPSKAEKAVSKRKHITEGGIKDQSAFDKICAG-TTFENDSVEKCILN 589
EN ++ S+ + K + R+ G K+Q+ KI + E+D C
Sbjct: 388 EN-KIKDVSDRINQIDNELKGLLDRRGDLNGR-KEQTL--KIYNNLNSIEDDRCPICGRP 443
Query: 590 ANSSNK----NLEKIQTFIASKGTILSQTALNALIRKRNALALQQRAIEDEM 637
+S +K K+Q +K Q +N+LI++R L + ++ E+
Sbjct: 444 LDSEHKAKIREEIKVQLLELNKQITALQARINSLIKEREELEATRNKLQLEL 495
>ATRX_CAEEL (Q9U7E0) Transcriptional regulator ATRX homolog
(X-linked nuclear protein-1)
Length = 1359
Score = 33.1 bits (74), Expect = 2.7
Identities = 36/138 (26%), Positives = 58/138 (41%), Gaps = 16/138 (11%)
Query: 467 KPGSDTKVALNQKEKNGCGITKRCDSVKEDWDMDVDKSLVLPSKNKECQKHTANTLHISE 526
K S KV +KEK+ KR S ED D D ++ K+K+ +K T++ SE
Sbjct: 103 KSKSKKKVDQKKKEKSK---KKRTTSSSEDEDSDEEREQKSKKKSKKTKKQTSS--ESSE 157
Query: 527 DQKIENPSVQHHSNECTRPSKAEKAVSKRKHITEGGIKDQSAFDKICAG----TTFENDS 582
+ + E + N+ EK+V KR +E +D+ K G E++S
Sbjct: 158 ESEEERKVKKSKKNK-------EKSVKKRAETSEESDEDEKPSKKSKKGLKKKAKSESES 210
Query: 583 VEKCILNANSSNKNLEKI 600
+ S K +K+
Sbjct: 211 ESEDEKEVKKSKKKSKKV 228
>Y075_MYCGE (P47321) Hypothetical protein MG075
Length = 1024
Score = 32.7 bits (73), Expect = 3.5
Identities = 45/188 (23%), Positives = 83/188 (43%), Gaps = 30/188 (15%)
Query: 527 DQKIENPSVQHHSNECTRPSKAEKAVSKRKHITEGGIKDQ-SAFDKICAGTTFENDSVEK 585
D + VQ +N+ T+ +K ++ +G + DQ S+ ++ FEN+
Sbjct: 497 DLFLAKQKVQEVNNDGTKSTKIVDSILVAT--LKGLVGDQLSSITELLNIYIFENE---- 550
Query: 586 CILNANSSNKNLEKIQT-----FIASKGTILSQTALNAL----IRKRNALALQQRAIEDE 636
LN N SN +++K QT + G ILS+T +N + ++ L+L + A +
Sbjct: 551 -FLNRNDSNSSVKKQQTDSLKNLFSVIGDILSETNVNKITLHAVKNNELLSLVETASTLK 609
Query: 637 MAVCNMKIHRWLAGEEDDFELKLESVIEGCNGTWLRKLDGICHENNWILPTYSVSLSDGE 696
+ N++ + D FELK +++++L + I PT L + E
Sbjct: 610 IKHLNVQYKVLV----DKFELK---------NSFIKELLNFFPDTKDITPTIKKVLFESE 656
Query: 697 FHATVRVK 704
+ T+R K
Sbjct: 657 NYKTLRKK 664
>SNE2_HUMAN (Q8WXH0) Nesprin 2 (Nuclear envelope spectrin repeat
protein 2) (Syne-2) (Synaptic nuclear envelope protein 2)
(Nucleus and actin connecting element protein) (NUANCE
protein)
Length = 6885
Score = 32.7 bits (73), Expect = 3.5
Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 7/104 (6%)
Query: 541 ECTR-PSKAEKAVSKRKHITEGGIKDQSAFDKICAGTTFENDSVEKCILNANSSNKNLEK 599
ECT+ PS +E+ + KH+ E ++ + G E+DS + C+ + N++ N K
Sbjct: 2211 ECTKNPSFSEEPWLEIKHLHESLLQQLQDSVQNLDGHVREHDSYQVCVTDLNTTLDNFSK 2270
Query: 600 IQTFIASKGTILSQTALNALIRK----RNALALQQRAIEDEMAV 639
F++ + Q A+ ++K N L+LQ ++ +A+
Sbjct: 2271 --EFVSFSDKPVDQIAVEEKLQKLQELENRLSLQDGTLKKILAL 2312
>SBCC_CLOAB (Q97FK1) Nuclease sbcCD subunit C
Length = 1163
Score = 32.7 bits (73), Expect = 3.5
Identities = 41/207 (19%), Positives = 80/207 (37%), Gaps = 30/207 (14%)
Query: 429 ETFSNSLQDSKLAEKQFPKHEVTESHVSSKGLYIDLDNKPGSDTKVALNQKEKNGCGITK 488
+T++ LQD K FPK +V + LN + ++
Sbjct: 476 DTYTKKLQD---LNKDFPKDDVLLTFQEK------------------LNDSRQKWAKYSE 514
Query: 489 RCDSVKEDWDMDVDKSLVLPSKNKECQKHTANTLHIS-EDQKIENPSVQHHSNECTRPSK 547
+S+K + + VL +K +E K ++ + + +E ++ H E + +
Sbjct: 515 YNESLKASLRVVENSEQVLRTKKEEMTKLEDKISKVNIKIESLETENMAHVLREKLKSGE 574
Query: 548 AEKAVSKRKHITEGGIK-DQSAFDKICAGTT-------FENDSVEKCILNANSSNKNLEK 599
A HI EG + D A + + + FEN+ + C + KN++K
Sbjct: 575 ACPVCGSVHHIKEGFKEVDLKALETLKSELEGFEKKRKFENEEIVMCEASIKVEEKNIKK 634
Query: 600 IQTFIASKGTILSQTALNALIRKRNAL 626
+ I + G + +L ++ +K N L
Sbjct: 635 LNESINNLGEEFKEVSLESMEKKFNYL 661
>LMA3_MOUSE (Q61789) Laminin alpha-3 chain precursor (Nicein alpha
subunit)
Length = 3333
Score = 32.7 bits (73), Expect = 3.5
Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 13/130 (10%)
Query: 548 AEKAVSKRKHITEGGIKDQSAFDKICAGTTFENDSVEKCILNANSSNKNLEKIQTFIASK 607
AE A SK ++ + D T +DS E+ + A + K L+++
Sbjct: 2189 AEDAASKATSASKSAFQTVIKEDLPKRAKTLSSDS-EELLNEAKMTQKRLQQVSP----- 2242
Query: 608 GTILSQTALNALIRKRNALALQQRAIEDEMAVCNMKIHRWLAGEEDDFELKLESVIEGCN 667
ALN+L + +++Q+ ++ + V +H G+ D + +S++ N
Sbjct: 2243 -------ALNSLQQTLKTVSVQKDLLDANLTVARDDLHGIQRGDIDSVVIGAKSMVREAN 2295
Query: 668 GTWLRKLDGI 677
G LDG+
Sbjct: 2296 GITSEVLDGL 2305
>ZF37_HUMAN (Q9Y6Q3) Zinc finger protein 37 homolog (Zfp-37)
Length = 597
Score = 32.3 bits (72), Expect = 4.6
Identities = 32/143 (22%), Positives = 60/143 (41%), Gaps = 15/143 (10%)
Query: 428 RETFSNSLQDSKLAEKQF-PKHEVTESHVSSKGLYIDLDNKPGSD-------TKVALNQK 479
+++F++SL D++ +KQ KHE SH SS D NK G + + Q
Sbjct: 176 KKSFNHSLSDTRKGKKQTGKKHEKLSSHSSS-----DKCNKTGKKHDKLCCHSSSHIKQD 230
Query: 480 EKNGCGITKRCDSVKEDWDMDVDKSLVLPSKNKECQKHTANTLHISEDQKIENPSVQHHS 539
+ ++ S+ + ++ V P + +C K ++ + + Q++ +
Sbjct: 231 KIQTGEKHEKSPSLSSSTKHEKPQACVKPYECNQCGKVLSHKQGLIDHQRVHTGEKPYEC 290
Query: 540 NEC--TRPSKAEKAVSKRKHITE 560
NEC K+ V +R H E
Sbjct: 291 NECGIAFSQKSHLVVHQRTHTGE 313
>XPC_DROME (Q24595) DNA-repair protein complementing XP-C cells
homolog (Xeroderma pigmentosum group C complementing
protein homolog) (XPCDM) (Mutagen-sensitive 209 protein)
Length = 1293
Score = 32.3 bits (72), Expect = 4.6
Identities = 35/122 (28%), Positives = 58/122 (46%), Gaps = 18/122 (14%)
Query: 487 TKRCDSVKEDWDMDVDKSLVLPSKNKECQKH-TANTLHISEDQKIENPSVQHHSNECTRP 545
TK ++ K V K L L SK E KH A+T S+ E PS S++C +
Sbjct: 584 TKGSETTKSGTVPKVKKELSLSSKLVEKSKHQKAHTSSKSDTSFDEKPSTS-SSSKCLKE 642
Query: 546 SKAEKAVSKR--------KHITEGGIKDQSAFDKICAGTTFENDSVEKCILNANSSNKNL 597
+E +SK+ K + + K+QS+F + T+FE + + +SS+K+L
Sbjct: 643 EYSELGLSKKLLKPTLSSKLVLKS--KNQSSFSSNKSDTSFEENP------STSSSSKSL 694
Query: 598 EK 599
++
Sbjct: 695 KE 696
>VA11_VARV (P33836) Protein A11
Length = 319
Score = 32.3 bits (72), Expect = 4.6
Identities = 25/145 (17%), Positives = 63/145 (43%), Gaps = 3/145 (2%)
Query: 145 TQKPDQTDLVDVEQQLSLTEKAIASSCDICTCLDASKNVPNIEGWPVSKVAILLVDSKME 204
TQ P + D ++++ + E + + + + +S N+ N K +
Sbjct: 138 TQTPSLGVVYDKDKRIQMLEDEVVNLRNQQSNTKSSNNLDNFTRILFGKTPYKSTEVNKR 197
Query: 205 NCLLRFCSTTDGVWSVIEKDVGSSDQISEDMNELKHTYQKRR---VIQNPTKNGLNVDDD 261
++ + + SV + DV S D+I +K ++ R+ ++ N +N+ +
Sbjct: 198 IAIVNYANLNGSPLSVEDLDVCSEDEIDRIYKTIKQYHESRKRKIIVTNVIIIVINIIEQ 257
Query: 262 EFLQVGYSAVKEATGVNSNDIMLLE 286
L++G+ +K + +++I+ +E
Sbjct: 258 ALLKLGFDEIKGLSTDITSEIIDVE 282
>ILVD_HAEIN (P44851) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)
Length = 612
Score = 32.3 bits (72), Expect = 4.6
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 562 GIKDQSAFDKICAGTTFENDSVEKCIL---NANSSNKNLEKIQTFIASKGTILSQTALNA 618
GI+ AF + C T +ND V CI NA S L + +A G I+ ++
Sbjct: 384 GIRTTQAFSQDCRWDTVDNDRVNGCIRNKENAISQEGGLAVLFGNLAEDGCIVKTAGVDE 443
Query: 619 LIRKRNALALQQRAIEDEMA 638
I K A+ + ED +A
Sbjct: 444 SIWKFTGTAIVFESQEDAVA 463
>Z184_HUMAN (Q99676) Zinc finger protein 184
Length = 751
Score = 32.0 bits (71), Expect = 6.0
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 508 PSKNKECQKHTANTLHISEDQKIENPSVQHHSNECTRPSKAEKAVSKRKHITE 560
P + +C+K + + H+++ Q+I + NEC +KA S+ H+TE
Sbjct: 641 PYQCNKCEKTFSQSSHLTQHQRIHTGEKPYKCNEC------DKAFSRSTHLTE 687
>VA11_VACCC (P20988) Protein A11
Length = 318
Score = 32.0 bits (71), Expect = 6.0
Identities = 25/145 (17%), Positives = 63/145 (43%), Gaps = 3/145 (2%)
Query: 145 TQKPDQTDLVDVEQQLSLTEKAIASSCDICTCLDASKNVPNIEGWPVSKVAILLVDSKME 204
TQ P + D ++++ + E + + + + +S N+ N K +
Sbjct: 137 TQTPSLGVVYDKDKRIQMLEDEVVNLRNQRSNTKSSDNLDNFTRILFGKTPYKSTEVNKR 196
Query: 205 NCLLRFCSTTDGVWSVIEKDVGSSDQISEDMNELKHTYQKRR---VIQNPTKNGLNVDDD 261
++ + + SV + DV S D+I +K ++ R+ ++ N +N+ +
Sbjct: 197 IAIVNYANLNGSPLSVEDLDVCSEDEIDRIYKTIKQYHESRKRKIIVTNVIIIVINIIEQ 256
Query: 262 EFLQVGYSAVKEATGVNSNDIMLLE 286
L++G+ +K + +++I+ +E
Sbjct: 257 ALLKLGFEEIKGLSTDITSEIIDVE 281
>PAM_STRPY (P49054) Plasminogen-binding group A steptococcal M-like
protein PAM precursor (Fragment)
Length = 388
Score = 32.0 bits (71), Expect = 6.0
Identities = 36/130 (27%), Positives = 56/130 (42%), Gaps = 22/130 (16%)
Query: 439 KLAEKQFPKHEVTESHVSSKGLYIDLDNKPGSDTKVALNQKEKNGCGITKRCDSVKEDWD 498
K AE++ K E S S +GL DLD ++ A Q EK+ +T D VKE+
Sbjct: 155 KEAEQKKLKEEKQISDASRQGLRRDLDA-----SREAKKQVEKDLANLTAELDKVKEEKQ 209
Query: 499 M----------DVDKSLVLPSKNKECQKHTANTL----HISEDQKIENPSVQHHSNECTR 544
+ D+D S K+ +K AN + E+++I + S Q +
Sbjct: 210 ISDASRQGLRRDLDAS---REAKKQVEKGLANLTAELDKVKEEKQISDASRQGLRRDLDA 266
Query: 545 PSKAEKAVSK 554
+A+K V K
Sbjct: 267 SREAKKQVEK 276
>MUD2_YEAST (P36084) Splicing factor MUD2
Length = 527
Score = 32.0 bits (71), Expect = 6.0
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 278 NSNDIML----LESYTVYSQRKEKTASRFYIMKCSQSTADGSIQVPIKDLIESFRGPLLK 333
NS ++M +S Y+ K SR I SQS+ D SI +KDL+E+F L K
Sbjct: 181 NSQNVMYPGSSFDSPAYYNMASSKANSRLVISGLSQSS-DPSIVARLKDLLENFISGLQK 239
Query: 334 KSSSS 338
S++
Sbjct: 240 TESNA 244
>KSG1_SCHPO (Q12701) Serine/threonine-protein kinase ksg1 (EC
2.7.1.37)
Length = 592
Score = 31.6 bits (70), Expect = 7.9
Identities = 26/122 (21%), Positives = 54/122 (43%), Gaps = 9/122 (7%)
Query: 249 QNPTKNGLNVDDDEFLQVGYSAVKEATGVNSNDIMLLESYTVYSQRKEKT--ASRFYIMK 306
+N + + DD++ ++G V +G+N ND S +++ +RK +T + F
Sbjct: 447 ENKEWSSILQDDEKISKIGTLNVYSMSGINGNDAFRFFS-SLFRKRKPRTFILTNFGRYL 505
Query: 307 CSQSTADG----SIQVPIKDLIESFRGPLLKKSSSSWTITSVVEYFHVLPYSEIISDWIS 362
C S +G ++PIK + R ++K + W + + + + + S W+
Sbjct: 506 CVASDGEGRKTVKEEIPIKSV--GMRCRMVKNNEHGWVVETPTKSWSFEDPNGPASAWVE 563
Query: 363 RL 364
L
Sbjct: 564 LL 565
>DME_ARATH (Q8LK56) Transcriptional activator DEMETER (DNA
glycosylase-related protein DME)
Length = 1729
Score = 31.6 bits (70), Expect = 7.9
Identities = 30/116 (25%), Positives = 57/116 (48%), Gaps = 18/116 (15%)
Query: 507 LPSKNKECQKHTANTLHISEDQKIENPSVQ-------HHSNEC-TRPSKAEKAVSKRKHI 558
L + Q+H +T H +D+ + +Q + S EC TR S S +++I
Sbjct: 1071 LSGSSSAVQEHQDDTQHNQQDEMNKASHLQKTFLDLLNSSEECLTRQS------STKQNI 1124
Query: 559 TEGGI-KDQSAFDKICAGTTFENDSVEKCILNANSSNKNLEKIQTFIASKGTILSQ 613
T+G + +D++A D + N S++ ++ +NSSNK ++ + + TIL +
Sbjct: 1125 TDGCLPRDRTAEDVV--DPLSNNSSLQNILVESNSSNKEQTAVE-YKETNATILRE 1177
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.324 0.136 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,486,433
Number of Sequences: 164201
Number of extensions: 3381420
Number of successful extensions: 11739
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 11719
Number of HSP's gapped (non-prelim): 47
length of query: 738
length of database: 59,974,054
effective HSP length: 118
effective length of query: 620
effective length of database: 40,598,336
effective search space: 25170968320
effective search space used: 25170968320
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 70 (31.6 bits)
Medicago: description of AC146574.11