BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146570.6 + phase: 0
(101 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RA50_NANEQ (P62135) DNA double-strand break repair rad50 ATPase 28 3.0
PPID_BUCAI (P57550) Peptidyl-prolyl cis-trans isomerase D (EC 5.... 28 3.0
VA36_VARV (P33852) Protein A36 precursor 28 3.9
RS20_SYNY3 (P73336) 30S ribosomal protein S20 28 3.9
VA36_VACCV (P21059) Protein A36 precursor 28 5.1
TIM1_RAT (P30120) Metalloproteinase inhibitor 1 precursor (TIMP-1) 28 5.1
EX5B_BUCAI (P57529) Exodeoxyribonuclease V beta chain (EC 3.1.11.5) 28 5.1
RK24_TOBAC (Q02764) 50S ribosomal protein L24, chloroplast precu... 27 8.8
HRCA_CHLMU (P54306) Heat-inducible transcription repressor hrcA 27 8.8
COAE_FUSNN (Q8RHR7) Dephospho-CoA kinase (EC 2.7.1.24) (Dephosph... 27 8.8
>RA50_NANEQ (P62135) DNA double-strand break repair rad50 ATPase
Length = 786
Score = 28.5 bits (62), Expect = 3.0
Identities = 19/55 (34%), Positives = 33/55 (59%), Gaps = 3/55 (5%)
Query: 3 INKIN-KAIISYIISLKTK--KLEELSTSSKNIIKKIYKAIHCKILKMKKQEDDK 54
IN IN K I S I +++ + +EEL+ K+I+ K ++ I C +K + +E +K
Sbjct: 253 INNINVKEIESKINNIREELNNIEELTDYEKDILSKKHEIIRCNEIKNRLKELEK 307
>PPID_BUCAI (P57550) Peptidyl-prolyl cis-trans isomerase D (EC
5.2.1.8) (PPIase D) (Rotamase D)
Length = 623
Score = 28.5 bits (62), Expect = 3.0
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 2 IINKINKAIISYIISLKTKKLEELSTSSKNIIKKIYKAIHCKILKMKKQE 51
I+ K N++ + I K K+++ KNIIKK+ K K K +E
Sbjct: 458 IVLKKNQSFLIKIKKFKNKEIQHFENVKKNIIKKLRFIKAIKETKKKSEE 507
>VA36_VARV (P33852) Protein A36 precursor
Length = 216
Score = 28.1 bits (61), Expect = 3.9
Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 12/89 (13%)
Query: 10 IISYIISLKTKKLEELSTSSKNIIKKIYKAIHCKILKMKKQEDDKCLWK----------- 58
++ YI+ + KK+ + +K I+ K+ K K K D++ W+
Sbjct: 17 LVCYILYICRKKIRTVYNDNKIIMTKLKKIKSSNSSKSSKSTDNESDWEDHCSAMEQNND 76
Query: 59 -KTILMGEKCQPLEFPGAIFYDSEGNQLS 86
I E F G++ +D+E N ++
Sbjct: 77 VDNISRNEILDDDSFAGSLIWDNESNVIA 105
>RS20_SYNY3 (P73336) 30S ribosomal protein S20
Length = 97
Score = 28.1 bits (61), Expect = 3.9
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 2 IINKINKAIISYIISLKTKKLEELSTSSKNIIKKIYKAIHCKIL 45
++ K +++ +Y +KL+ ++TS KI KA+ CK++
Sbjct: 31 LMKKTFQSVEAYASDPNPEKLDTINTSMAAAFSKIDKAVKCKVI 74
>VA36_VACCV (P21059) Protein A36 precursor
Length = 221
Score = 27.7 bits (60), Expect = 5.1
Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Query: 10 IISYIISLKTKKLEELSTSSKNIIKKIYKAIHCKILKMKKQEDDKCLWK----------- 58
++ YI+ + KK+ + +K I+ K+ K K K D + W+
Sbjct: 17 LVCYILYICRKKIRTVYNDNKIIMTKLKKIKSSNSSKSSKSTDSESDWEDHCSAMEQNND 76
Query: 59 -KTILMGEKCQPLEFPGAIFYDSEGNQLS 86
I E F G++ +D+E N ++
Sbjct: 77 VDNISRNEILDDDSFAGSLIWDNESNVMA 105
>TIM1_RAT (P30120) Metalloproteinase inhibitor 1 precursor (TIMP-1)
Length = 217
Score = 27.7 bits (60), Expect = 5.1
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 25 LSTSSKNIIKKIYKA-------IHCKILKMKKQEDDKCLWKKTILMGEK 66
LS + + K Y A C + K + D CLW ILMG +
Sbjct: 131 LSPAQQKAFVKTYSAGCGVCTVFPCSAIPCKLESDSHCLWTDQILMGSE 179
>EX5B_BUCAI (P57529) Exodeoxyribonuclease V beta chain (EC 3.1.11.5)
Length = 1174
Score = 27.7 bits (60), Expect = 5.1
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 4 NKINKAIISYIISLKTKKLEELSTSSKNIIKKIY--KAIHCKILKMKKQE 51
N IN YII +++K+ + S KN+I IY K IH +LK KK++
Sbjct: 299 NTINNTCSKYIIFEESEKILKKKFSLKNVI-IIYAVKKIHQFLLKEKKKK 347
>RK24_TOBAC (Q02764) 50S ribosomal protein L24, chloroplast
precursor (CL24)
Length = 187
Score = 26.9 bits (58), Expect = 8.8
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 3 INKINKAIISYIISLKTKKLEELSTSSKNIIKKIYKAIHCK--ILKMKKQEDDKCLWKKT 60
I K N ++ ++LKTK ++ S I KI IH +L K+Q+ + KT
Sbjct: 87 IIKHNSKVVVKDVNLKTKHVKSRSEDEPGQIVKIEAPIHSSNVMLYSKEQKVASRVGHKT 146
Query: 61 ILMGEKCQPLEFPGAIFYDSE 81
+ G++ + L G I +E
Sbjct: 147 LDNGKRVRYLIKTGEIIDSAE 167
>HRCA_CHLMU (P54306) Heat-inducible transcription repressor hrcA
Length = 392
Score = 26.9 bits (58), Expect = 8.8
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 15 ISLKTKKLEELSTSSKNIIKKIYKA 39
IS+ +KL+EL SKNI+K + KA
Sbjct: 100 ISIIQQKLKELPEYSKNIVKDLQKA 124
>COAE_FUSNN (Q8RHR7) Dephospho-CoA kinase (EC 2.7.1.24)
(Dephosphocoenzyme A kinase)
Length = 193
Score = 26.9 bits (58), Expect = 8.8
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 2 IINKINKAIISYIISLKTKKLEELSTSSKNIIKKIYKAIHCKILKMKKQEDDK 54
II+ I+ ++ KKL+E+ +K ++K+ IH K++ K+ +K
Sbjct: 50 IISTFGNKILDKNGNIDRKKLKEIVFENKEKLEKLNGIIHPKVINFYKELKEK 102
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.315 0.132 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,857,817
Number of Sequences: 164201
Number of extensions: 438849
Number of successful extensions: 1065
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1060
Number of HSP's gapped (non-prelim): 10
length of query: 101
length of database: 59,974,054
effective HSP length: 77
effective length of query: 24
effective length of database: 47,330,577
effective search space: 1135933848
effective search space used: 1135933848
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)
Medicago: description of AC146570.6