BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146566.1 + phase: 0
(155 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
NUCL_MOUSE (P09405) Nucleolin (Protein C23) 39 0.006
NUCL_RAT (P13383) Nucleolin (Protein C23) 38 0.008
TOM1_NEUCR (Q9P4Z1) E3 ubiquitin protein ligase TOM1-like protei... 38 0.010
NPM_RAT (P13084) Nucleophosmin (NPM) (Nucleolar phosphoprotein B... 37 0.017
NPM_MOUSE (Q61937) Nucleophosmin (NPM) (Nucleolar phosphoprotein... 37 0.017
A32E_MOUSE (P97822) Acidic leucine-rich nuclear phosphoprotein 3... 36 0.030
YTB2_CAEEL (O17580) Hypothetical UPF0120 protein C07E3.2 in chro... 36 0.039
VHS3_YEAST (Q08438) Protein VHS3 (Viable in a HAL3 SIT4 backgrou... 36 0.039
RPOE_LACPL (Q88Z77) Probable DNA-directed RNA polymerase delta s... 35 0.051
UBF2_XENLA (P25980) Nucleolar transcription factor 2 (Upstream b... 35 0.087
NUCL_XENLA (P20397) Nucleolin (Protein C23) 34 0.11
NUCL_HUMAN (P19338) Nucleolin (Protein C23) 34 0.11
SU6H_HUMAN (Q7KZ85) Suppressor of Ty 6 homolog protein (Chromati... 34 0.15
RPOE_STRMU (Q8DWG2) Probable DNA-directed RNA polymerase delta s... 34 0.15
AR3A_HUMAN (Q99856) AT-rich interactive domain-containing protei... 34 0.15
SKP1_XENLA (Q71U00) S-phase kinase-associated protein 1A (Cyclin... 33 0.19
SKP1_RAT (Q6PEC4) S-phase kinase-associated protein 1A (Cyclin A... 33 0.19
SKP1_MOUSE (Q9WTX5) S-phase kinase-associated protein 1A (Cyclin... 33 0.19
SKP1_HUMAN (P63208) S-phase kinase-associated protein 1A (Cyclin... 33 0.19
SKP1_CAVPO (P63209) S-phase kinase-associated protein 1A (Cyclin... 33 0.19
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)
Length = 706
Score = 38.5 bits (88), Expect = 0.006
Identities = 22/75 (29%), Positives = 36/75 (47%)
Query: 79 GMDAFGPDDDEEEFNVFRMAAMQEAMVSGIDDFGPDDFPGIDPMDAALISMMMHSHMDDE 138
G +A D DE+E + ++ D+F P G+ P AA + DDE
Sbjct: 136 GKNAKKEDSDEDEDEEDEDDSDEDEDDEEEDEFEPPIVKGVKPAKAAPAAPASEDEEDDE 195
Query: 139 EDDEDYEDEEEYTDD 153
++D++ +D+EE DD
Sbjct: 196 DEDDEEDDDEEEEDD 210
Score = 35.8 bits (81), Expect = 0.039
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 11/107 (10%)
Query: 55 DSDDDDDDGFRVSRMAAMQEAMAIGMDAFGPD-------DDEEEFNVFRMAAMQEAMVSG 107
D DD+++D F + ++ A A D DDEE+ + +E ++
Sbjct: 159 DEDDEEEDEFEPPIVKGVKPAKAAPAAPASEDEEDDEDEDDEEDDDEEEEDDSEEEVMEI 218
Query: 108 IDDFGPDDFPGIDPMDAALISMMMHSHMDDEEDDEDYEDEEEYTDDE 154
G + PM A ++ DDEE+DED EDE++ +D+
Sbjct: 219 TTAKGKKTPAKVVPMKAKSVA----EEEDDEEEDEDDEDEDDEEEDD 261
>NUCL_RAT (P13383) Nucleolin (Protein C23)
Length = 712
Score = 38.1 bits (87), Expect = 0.008
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 55 DSDDDDDDGFRVSRMAAMQEAMAIGMDAFGPDDDEEEFNVFRMAAMQEAMVSGIDDFGPD 114
D D+D++D F + ++ A A D+DEE+ + E +D +
Sbjct: 157 DEDEDEEDEFEPPVVKGVKPAKAAPAAPASEDEDEEDDDDEDDDDDDEEEEE--EDDSEE 214
Query: 115 DFPGIDPMD-----AALISMMMHSHMDDEEDDEDYEDEEEYTDDE 154
+ I P A ++ + S ++EEDDED EDEEE D+E
Sbjct: 215 EVMEITPAKGKKTPAKVVPVKAKSVAEEEEDDEDDEDEEEDEDEE 259
Score = 29.6 bits (65), Expect = 2.8
Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 21/100 (21%)
Query: 55 DSDDDDDDGFRVSRMAAMQEAMAIGMDAFGPDDDEEEFNVFRMAAMQEAMVSGIDDFGPD 114
D DDDDDD + +E M I A G + V + +E D+ +
Sbjct: 196 DEDDDDDDEEEEEEDDSEEEVMEI-TPAKGKKTPAKVVPVKAKSVAEEEEDDEDDEDEEE 254
Query: 115 DFPGIDPMDAALISMMMHSHMDDEEDDEDYEDEEEYTDDE 154
D +DEED+ED EDE+E ++E
Sbjct: 255 D--------------------EDEEDEEDDEDEDEEEEEE 274
Score = 28.5 bits (62), Expect = 6.2
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 133 SHMDDEEDDEDYEDEEEYTDDEY 155
S D++E+DED DE+E +DE+
Sbjct: 144 SDEDEDEEDEDDSDEDEDEEDEF 166
>TOM1_NEUCR (Q9P4Z1) E3 ubiquitin protein ligase TOM1-like protein (EC
6.3.2.-)
Length = 4065
Score = 37.7 bits (86), Expect = 0.010
Identities = 46/145 (31%), Positives = 61/145 (41%), Gaps = 22/145 (15%)
Query: 22 MRDSDFFEGMDPFEMMALSDSLAGGSGPCLGPFDSDDDDDDGFRVSRMAAMQEAMAIGMD 81
M D D + MD + LSD +G D DD +DD V +E AI D
Sbjct: 2480 MDDMDEDDEMDEDDEQELSDE---DEDEEVGSEDMDDLEDDIHIVD-----EEGNAIDDD 2531
Query: 82 AFGPDD-------DEEEFNVFRMAA-MQEAMVSGIDDFGPDDFPGI-----DPMDAALIS 128
DD DEEE + A MQEA + F P+ D +DA I
Sbjct: 2532 GASWDDGTDEDEEDEEELDYEAEAQNMQEAQLHNRRTF-PEIMRAAMENAGDDLDAEPIR 2590
Query: 129 MMMHSHMDDEEDDEDYEDEEEYTDD 153
++DD+ED E+ +DE+E DD
Sbjct: 2591 DFDGHYIDDDEDGEEDDDEDEGEDD 2615
Score = 29.3 bits (64), Expect = 3.6
Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 20/131 (15%)
Query: 38 ALSDSLAGGSGPCLGPFDSDDDDDDGFRVSRMAAMQEAMAIGMDAFGPDDDEEEFNVFRM 97
A + L+ GS D ++ D +R S + ++ D F +D++++ +++
Sbjct: 2364 AEDEFLSDGSSVSEDLTDDREETPDLYRNSTLGMLEPGRD---DEFSDEDEDDDEDMYDD 2420
Query: 98 AAMQEAMVSGID--------------DFGPDDFPGIDPMDAALISMMMHSHMDDEEDDED 143
+ + G D D G G P ++ ++M + DDEED++D
Sbjct: 2421 EQYDDELDYGDDMSQDNEDNPSDEEDDLGEMGEMGGMPGQPGVVEVLMGEN-DDEEDNDD 2479
Query: 144 YEDEEEYTDDE 154
+D +E DDE
Sbjct: 2480 MDDMDE--DDE 2488
>NPM_RAT (P13084) Nucleophosmin (NPM) (Nucleolar phosphoprotein B23)
(Numatrin) (Nucleolar protein NO38)
Length = 292
Score = 37.0 bits (84), Expect = 0.017
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 16/83 (19%)
Query: 73 QEAMAIGMDAFGPDDDEEEFNVFRMAAMQEAMVSGIDDFGPDDFPGIDPMDAALISMMMH 132
Q +A+ DA D+DEE+ + M+ + A G + P +D
Sbjct: 114 QHLVAVEEDAESEDEDEEDVKLLGMSGKRSAPGGG--NKVPQKKVKLDE----------- 160
Query: 133 SHMDDEEDDEDYEDEEEYTDDEY 155
DD+EDDED ED+E+ DD++
Sbjct: 161 ---DDDEDDEDDEDDEDDDDDDF 180
>NPM_MOUSE (Q61937) Nucleophosmin (NPM) (Nucleolar phosphoprotein
B23) (Numatrin) (Nucleolar protein NO38)
Length = 292
Score = 37.0 bits (84), Expect = 0.017
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 16/83 (19%)
Query: 73 QEAMAIGMDAFGPDDDEEEFNVFRMAAMQEAMVSGIDDFGPDDFPGIDPMDAALISMMMH 132
Q +A+ DA D+DEE+ + M+ + A G + P +D
Sbjct: 114 QHLVAVEEDAESEDEDEEDVKLLGMSGKRSAPGGG--NKVPQKKVKLDE----------- 160
Query: 133 SHMDDEEDDEDYEDEEEYTDDEY 155
DDE+DDED ED+E+ DD++
Sbjct: 161 ---DDEDDDEDDEDDEDDDDDDF 180
>A32E_MOUSE (P97822) Acidic leucine-rich nuclear phosphoprotein 32
family member E (LANP-like protein) (LANP-L) (Cerebellar
postnatal development protein-1)
Length = 260
Score = 36.2 bits (82), Expect = 0.030
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 22/100 (22%)
Query: 55 DSDDDDDDGFRVSRMAAMQEAMAIGMDAFGPDDDEEEFNVFRMAAMQEAMVSGIDDFGPD 114
+ DDDD+DG ++DE+E +E D+ G +
Sbjct: 160 EEDDDDEDGDE-------------------DEEDEDEDEAGPPEGYEEEEDDDEDEAGSE 200
Query: 115 DFPGIDPMDAALISMMMHSHMDDEEDDEDYEDEEEYTDDE 154
G + + +S +M + DEEDD+DY DE E ++E
Sbjct: 201 VGEGEEEVG---LSYLMKDEIQDEEDDDDYVDEGEEEEEE 237
>YTB2_CAEEL (O17580) Hypothetical UPF0120 protein C07E3.2 in
chromosome II
Length = 715
Score = 35.8 bits (81), Expect = 0.039
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 25/103 (24%)
Query: 52 GPFDSDDDDDDGFRVSRMAAMQEAMAIGMDAFGPDDDEEEFNVFRMAAMQEAMVSGIDDF 111
G D +D+DDG +++ +D + EF F+ ++A + ++D
Sbjct: 45 GSLDGSEDEDDGTVTVEKGGVKKHK---LDLEKLKQSDPEF--FKFLQQEDADLLNMEDD 99
Query: 112 GPDDFPGIDPMDAALISMMMHSHMDDEEDDEDYEDEEEYTDDE 154
G DD DD+EDDED E+EEE DDE
Sbjct: 100 GDDD-------------------EDDDEDDED-EEEEESDDDE 122
>VHS3_YEAST (Q08438) Protein VHS3 (Viable in a HAL3 SIT4 background
protein 3)
Length = 674
Score = 35.8 bits (81), Expect = 0.039
Identities = 37/154 (24%), Positives = 55/154 (35%), Gaps = 47/154 (30%)
Query: 1 MHDMLDVLGEVDLSSGEFYSIMRDSDFFEGMDPFEMMALSDSLAGGSGPCLGPFDSDDDD 60
M D +++G++ + G + + + E D E + GG D DDDD
Sbjct: 555 MMDANEIVGKIVVKLGGYPDVSAGKEEEEDEDNDEEDDNKKNDTGGKDEDNDDDDDDDDD 614
Query: 61 DDGFRVSRMAAMQEAMAIGMDAFGPDDDEEEFNVFRMAAMQEAMVSGIDDFGPDDFPGID 120
DD D DDD+++ DD DD D
Sbjct: 615 DD------------------DDDDDDDDDDD-----------------DDDDDDDDDDDD 639
Query: 121 PMDAALISMMMHSHMDDEEDDEDYEDEEEYTDDE 154
D DD++DD+D +DE+E DDE
Sbjct: 640 DDD------------DDDDDDDDEDDEDEDEDDE 661
>RPOE_LACPL (Q88Z77) Probable DNA-directed RNA polymerase delta
subunit (RNAP delta factor)
Length = 199
Score = 35.4 bits (80), Expect = 0.051
Identities = 24/106 (22%), Positives = 48/106 (44%), Gaps = 24/106 (22%)
Query: 44 AGGSGPCLGPFDSDDDDDDGFRVSRMAAMQEAMAIGMDAFGPDDDEEEFNVFRMAAMQEA 103
AG + D D +DDD + DDD+++ + A+ +
Sbjct: 115 AGDDDDVIDYDDDDPEDDDNY--------------------DDDDDQDDDTDDSASSKYD 154
Query: 104 MVSGIDDFGPDDFPGIDPMDAALISMMMHSHMDDEEDDEDYEDEEE 149
++G+DD DD + + + + S ++D++DD+DY+DE++
Sbjct: 155 ELAGVDD--TDDDVADETLPDGIEGQL--SELNDDDDDDDYDDEDD 196
Score = 28.5 bits (62), Expect = 6.2
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 136 DDEEDDEDYEDEEEYTDD 153
DD EDD++Y+D+++ DD
Sbjct: 127 DDPEDDDNYDDDDDQDDD 144
>UBF2_XENLA (P25980) Nucleolar transcription factor 2 (Upstream
binding factor-2) (UBF-2) (xUBF-2)
Length = 701
Score = 34.7 bits (78), Expect = 0.087
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 129 MMMHSHMDDEEDDEDYEDEEEYTDDE 154
+++ S DD+EDDED EDEE+ DD+
Sbjct: 608 LVIQSKSDDDEDDEDDEDEEDDDDDD 633
>NUCL_XENLA (P20397) Nucleolin (Protein C23)
Length = 650
Score = 34.3 bits (77), Expect = 0.11
Identities = 26/106 (24%), Positives = 48/106 (44%), Gaps = 6/106 (5%)
Query: 55 DSDDDDDDGFRVSRMAAMQEAMAIGMDAFGPDDDEEEFNVFRMAAMQE------AMVSGI 108
DSD++ +D + ++A+A ++ DDDE+E + A + A
Sbjct: 94 DSDEEAEDQKPIKNKPVAKKAVAKKEESEEDDDDEDESEEEKAVAKKPTPAKKPAGKKQE 153
Query: 109 DDFGPDDFPGIDPMDAALISMMMHSHMDDEEDDEDYEDEEEYTDDE 154
+ D+ +PM+ A + EEDDE+ +D++E DD+
Sbjct: 154 SEEEDDEESEDEPMEVAPALKGKKTAQAAEEDDEEEDDDDEEDDDD 199
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)
Length = 706
Score = 34.3 bits (77), Expect = 0.11
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 14/108 (12%)
Query: 55 DSDDDDDDGFRVSRMAAMQEAMAIGM--------DAFGPDDDEEEFNVFRMAAMQEAMVS 106
+ D+D+D+ AAM+ A A D DDD++E + AM+
Sbjct: 157 EDDEDEDEDEDEIEPAAMKAAAAAPASEDEDDEDDEDDEDDDDDEEDDSEEEAMETTPAK 216
Query: 107 GIDDFGPDDFPGIDPMDAALISMMMHSHMDDEEDDEDYEDEEEYTDDE 154
G + P+ A ++ DDE++D+D ++++E DDE
Sbjct: 217 G------KKAAKVVPVKAKNVAEDEDEEEDDEDEDDDDDEDDEDDDDE 258
Score = 33.5 bits (75), Expect = 0.19
Identities = 40/139 (28%), Positives = 49/139 (34%), Gaps = 42/139 (30%)
Query: 24 DSDFFEGMDPFEMMALSDSLAGGSGPCLGPFDSD---DDDDDGFRVSRMAAMQEAMAIGM 80
D D E D E A+ + A + D + DDDDD S AM+ A G
Sbjct: 159 DEDEDEDEDEIEPAAMKAAAAAPASEDEDDEDDEDDEDDDDDEEDDSEEEAMETTPAKGK 218
Query: 81 DA----------FGPDDDEEEFNVFRMAAMQEAMVSGIDDFGPDDFPGIDPMDAALISMM 130
A D+DEEE DD DD D D
Sbjct: 219 KAAKVVPVKAKNVAEDEDEEE-----------------DDEDEDDDDDEDDED------- 254
Query: 131 MHSHMDDEEDDEDYEDEEE 149
DD+EDDE+ E+EEE
Sbjct: 255 -----DDDEDDEEEEEEEE 268
Score = 33.5 bits (75), Expect = 0.19
Identities = 32/110 (29%), Positives = 41/110 (37%), Gaps = 42/110 (38%)
Query: 55 DSDDDDDDGFRVSRMAAMQEAMAIGMDA----------FGPDDDEEEFNVFRMAAMQEAM 104
D +DDDDD S AM+ A G A D+DEEE
Sbjct: 193 DDEDDDDDEEDDSEEEAMETTPAKGKKAAKVVPVKAKNVAEDEDEEE------------- 239
Query: 105 VSGIDDFGPDDFPGIDPMDAALISMMMHSHMDDEEDDEDYEDEEEYTDDE 154
DD DD D D+++DDED E+EEE ++E
Sbjct: 240 ----DDEDEDDDDDED---------------DEDDDDEDDEEEEEEEEEE 270
Score = 30.8 bits (68), Expect = 1.3
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 10/76 (13%)
Query: 79 GMDAFGPDDDEEEFNVFRMAAMQEAMVSGIDDFGPDDFPGIDPMDAALISMMMHSHMDDE 138
G +A D DEEE + ++ DD D+ D ++ A + + ++
Sbjct: 136 GKNAKKEDSDEEEDD--------DSEEDEEDDEDEDEDE--DEIEPAAMKAAAAAPASED 185
Query: 139 EDDEDYEDEEEYTDDE 154
EDDED ED+E+ DDE
Sbjct: 186 EDDEDDEDDEDDDDDE 201
>SU6H_HUMAN (Q7KZ85) Suppressor of Ty 6 homolog protein (Chromatin
structural protein)
Length = 1726
Score = 33.9 bits (76), Expect = 0.15
Identities = 38/124 (30%), Positives = 51/124 (40%), Gaps = 27/124 (21%)
Query: 56 SDDDDDDGFRVSRMAAMQEAMAIGMDAFGPDDDEEEFNVFRMAAMQEAMV----SGIDDF 111
SDD+DDD + +EA+A + G ++ +E MA +E S IDDF
Sbjct: 125 SDDEDDDEEEYGKEEHEKEAIAEEIFQDGEGEEGQEAMEAPMAPPEEEEEDDEESDIDDF 184
Query: 112 GPDD-------------FPGIDPMDAALISMMMHSHMDDEED--------DEDYEDEEEY 150
DD PG DAAL +D + D DE+ E+E EY
Sbjct: 185 IVDDDGQPLKKPKWRKKLPGYT--DAALQEAQEIFGVDFDYDEFEKYNEYDEELEEEYEY 242
Query: 151 TDDE 154
DDE
Sbjct: 243 EDDE 246
>RPOE_STRMU (Q8DWG2) Probable DNA-directed RNA polymerase delta
subunit (RNAP delta factor)
Length = 194
Score = 33.9 bits (76), Expect = 0.15
Identities = 25/102 (24%), Positives = 46/102 (44%), Gaps = 9/102 (8%)
Query: 58 DDDDDGFRVSRMAAMQEAMAIGMDAFGPDDDEEEFNVFRMAAMQEAMVSGIDDFGPDDFP 117
++D+DG + + M DA DD+ E F A + D+ PDD
Sbjct: 97 EEDEDGAPKHKRKRVNAFMDGDEDAIDYSDDDPEDESFNTAEED----TEYDEEDPDDEK 152
Query: 118 G-IDPMDAALISMMMHSHMDD----EEDDEDYEDEEEYTDDE 154
++ D+ + ++ +D+ +E+D+DY D+EE + E
Sbjct: 153 SEVESYDSEINEIIPDEDLDENVDLDEEDDDYSDDEEDEEGE 194
>AR3A_HUMAN (Q99856) AT-rich interactive domain-containing protein
3A (ARID domain-containing protein 3A) (B-cell regulator
of IgH transcription) (Bright) (E2F binding protein 1)
Length = 593
Score = 33.9 bits (76), Expect = 0.15
Identities = 13/19 (68%), Positives = 17/19 (89%)
Query: 136 DDEEDDEDYEDEEEYTDDE 154
D+EE++EDYEDEEE D+E
Sbjct: 139 DEEEEEEDYEDEEEEEDEE 157
>SKP1_XENLA (Q71U00) S-phase kinase-associated protein 1A (Cyclin
A/CDK2-associated protein p19) (p19A) (p19skp1)
Length = 162
Score = 33.5 bits (75), Expect = 0.19
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 107 GIDDFGPDDFPGIDPMDAALISMMMH---SHMDDEEDDEDYEDEEEYTDD 153
G+DD G DD + ++AA++ ++ H DD ED E++E+ TDD
Sbjct: 34 GMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDD 83
>SKP1_RAT (Q6PEC4) S-phase kinase-associated protein 1A (Cyclin
A/CDK2-associated protein p19) (p19A) (p19skp1)
Length = 162
Score = 33.5 bits (75), Expect = 0.19
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 107 GIDDFGPDDFPGIDPMDAALISMMMH---SHMDDEEDDEDYEDEEEYTDD 153
G+DD G DD + ++AA++ ++ H DD ED E++E+ TDD
Sbjct: 34 GMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDD 83
>SKP1_MOUSE (Q9WTX5) S-phase kinase-associated protein 1A (Cyclin
A/CDK2-associated protein p19) (p19A) (p19skp1)
Length = 162
Score = 33.5 bits (75), Expect = 0.19
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 107 GIDDFGPDDFPGIDPMDAALISMMMH---SHMDDEEDDEDYEDEEEYTDD 153
G+DD G DD + ++AA++ ++ H DD ED E++E+ TDD
Sbjct: 34 GMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDD 83
>SKP1_HUMAN (P63208) S-phase kinase-associated protein 1A (Cyclin
A/CDK2-associated protein p19) (p19A) (p19skp1) (RNA
polymerase II elongation factor-like protein) (Organ of
Corti protein 2) (OCP-II protein) (OCP-2) (Transcription
elongation factor B) (S
Length = 162
Score = 33.5 bits (75), Expect = 0.19
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 107 GIDDFGPDDFPGIDPMDAALISMMMH---SHMDDEEDDEDYEDEEEYTDD 153
G+DD G DD + ++AA++ ++ H DD ED E++E+ TDD
Sbjct: 34 GMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDD 83
>SKP1_CAVPO (P63209) S-phase kinase-associated protein 1A (Cyclin
A/CDK2-associated protein p19) (p19A) (p19skp1) (Organ
of Corti protein 2) (OCP-II protein) (OCP-2)
Length = 162
Score = 33.5 bits (75), Expect = 0.19
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 107 GIDDFGPDDFPGIDPMDAALISMMMH---SHMDDEEDDEDYEDEEEYTDD 153
G+DD G DD + ++AA++ ++ H DD ED E++E+ TDD
Sbjct: 34 GMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDD 83
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.317 0.138 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,867,581
Number of Sequences: 164201
Number of extensions: 952197
Number of successful extensions: 9796
Number of sequences better than 10.0: 203
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 7152
Number of HSP's gapped (non-prelim): 1463
length of query: 155
length of database: 59,974,054
effective HSP length: 101
effective length of query: 54
effective length of database: 43,389,753
effective search space: 2343046662
effective search space used: 2343046662
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Medicago: description of AC146566.1