BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146561.5 + phase: 2 /pseudo/partial
         (263 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TTCD_HUMAN (Q8NBP0) Tetratricopeptide repeat protein 13 (TPR rep...   100  4e-21
ATPG_HELPY (P56082) ATP synthase gamma chain (EC 3.6.3.14)             32  1.2
ATPG_HELPJ (Q9ZK80) ATP synthase gamma chain (EC 3.6.3.14)             32  1.2
MECA_STRA5 (Q8E259) Adapter protein mecA                               32  2.1
MECA_STRA3 (Q8E7L9) Adapter protein mecA                               32  2.1
AROB_THEVO (Q978S6) 3-dehydroquinate synthase (EC 4.2.3.4)             32  2.1
DYR_PNECA (P16184) Dihydrofolate reductase (EC 1.5.1.3)                31  3.5
SLTB_BP933 (P09386) Shiga-like toxin II subunit B precursor (Ver...    30  6.0
YBBP_ECOLI (P77504) Hypothetical protein ybbP                          30  7.8
POLG_ENMG3 (P32540) Genome polyprotein [Contains: Coat protein V...    30  7.8

>TTCD_HUMAN (Q8NBP0) Tetratricopeptide repeat protein 13 (TPR repeat
           protein 13)
          Length = 859

 Score =  100 bits (249), Expect = 4e-21
 Identities = 77/261 (29%), Positives = 131/261 (49%), Gaps = 12/261 (4%)

Query: 6   GFGSHTPMILGQAKVVRYFPNYERTLDIAKTVMKERSYV-HGKTDQIIHLSNDGKLEEIM 64
           GF +H  +I GQ   +RY   +E+ L      +K+R  V HG  +    L     LE++ 
Sbjct: 596 GFNNHINLIRGQVINMRYLEYFEKILHF----IKDRILVYHGANNPKGLLEVREALEKVH 651

Query: 65  HAKSCSDLYKV---VGEDFWSSTWCNSTAFEGKQLEGTRVTLVKMGQHGFDFAIRTPCTP 121
             +    + K      + F  +T   S   +GK+ +G  +T+         F++ T  T 
Sbjct: 652 KVEDLLPIMKFNTKTKDGFTVNTKVPSLKDQGKEYDGFTITITGDKVGNILFSVETQTTE 711

Query: 122 ARWEDYDAEMAMAWEALCNAYCGENYGSTDFDVLENVRDAILRMTYYWYNFMPLSRGTAA 181
            R + Y AE+   ++ L  A       S++F   + V + IL + YY+YN MPLSRG++ 
Sbjct: 712 ERTQLYHAEIDALYKDL-TAKGKVLILSSEFGEADAVCNLILSLVYYFYNLMPLSRGSSV 770

Query: 182 VGFAVMLGLLLAANMEFTGSIPQGFQVDWEAILNLDPNSFVDSVKSWLYPSLK-VTTSWK 240
           + ++V++G L+A+  E  G IP+G  VD+EA+      +F    KSW+  +LK ++ S+K
Sbjct: 771 IAYSVIVGALMASGKEVAGKIPKGKLVDFEAMTAPGSEAFSKVAKSWM--NLKSISPSYK 828

Query: 241 DYHDVASTFATTGSVVAALSS 261
               V+ TF T  S++  L++
Sbjct: 829 TLPSVSETFPTLRSMIEVLNT 849


>ATPG_HELPY (P56082) ATP synthase gamma chain (EC 3.6.3.14)
          Length = 301

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 4   NSGFGSHTPMILGQAKVVRYFPNYERTLDIAKTVMKERSYVHGKTDQIIHLSNDGK 59
           N  F  +   +L +   +   PNYER  +  K V+++  Y+ GKTD++I + N  K
Sbjct: 131 NEYFSFNGIEVLDKINNLSSMPNYERVQEFMKKVVED--YLSGKTDKVIIIHNGFK 184


>ATPG_HELPJ (Q9ZK80) ATP synthase gamma chain (EC 3.6.3.14)
          Length = 301

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 4   NSGFGSHTPMILGQAKVVRYFPNYERTLDIAKTVMKERSYVHGKTDQIIHLSNDGK 59
           N  F  +   +L +   +   PNYER  +  K V+++  Y+ GKTD++I + N  K
Sbjct: 131 NEYFSFNGIEVLDKINNLSSMPNYERAQEFMKKVVED--YLSGKTDKVIIIHNGFK 184


>MECA_STRA5 (Q8E259) Adapter protein mecA
          Length = 251

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 1   EEFNSGFGSHTPMILGQAKVVRYFPN--YERTLDIAKTVMKERSYVHGKTDQIIHLSNDG 58
           E + +G G H  ++L       YF N  Y R L+ A    K R+Y+   + Q+IH     
Sbjct: 184 ELYKNGKGYHMTILLDLENQPSYFANLMYARMLEHANVGTKTRAYLKEHSIQLIHDDAIS 243

Query: 59  KLEEI 63
           KL+ I
Sbjct: 244 KLQMI 248


>MECA_STRA3 (Q8E7L9) Adapter protein mecA
          Length = 251

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 1   EEFNSGFGSHTPMILGQAKVVRYFPN--YERTLDIAKTVMKERSYVHGKTDQIIHLSNDG 58
           E + +G G H  ++L       YF N  Y R L+ A    K R+Y+   + Q+IH     
Sbjct: 184 ELYKNGKGYHMTILLDLENQPSYFANLMYARMLEHANVGTKTRAYLKEHSIQLIHDDAIS 243

Query: 59  KLEEI 63
           KL+ I
Sbjct: 244 KLQMI 248


>AROB_THEVO (Q978S6) 3-dehydroquinate synthase (EC 4.2.3.4)
          Length = 360

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 132 AMAWEALCNAYCGENYGSTDFDVLENVRDAILR 164
           A+A   L  A+ GE YG+T+ +V+E +RD + R
Sbjct: 262 AVATGMLVEAHIGEKYGNTNHEVIEAIRDLMKR 294


>DYR_PNECA (P16184) Dihydrofolate reductase (EC 1.5.1.3)
          Length = 206

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 11/119 (9%)

Query: 1   EEFNSGFGSHTPMILGQAKVVRYFPNYERTLDIAKTVMKERSYVHGKTDQIIHLSNDGKL 60
           E  + G G H+   L  A  + Y     RT     +V   R +V G         +  KL
Sbjct: 84  ESLDLGNGIHSAKSLDHALELLY-----RTYGSESSVQINRIFVIGGAQLYKAAMDHPKL 138

Query: 61  EEIMHAKSCSDLYKVV------GEDFWSSTWCNSTAFEGKQLEGTRVTLVKMGQHGFDF 113
           + IM      D++  V       +  WSS W      + +   GT+V   K+ + GFD+
Sbjct: 139 DRIMATIIYKDIHCDVFFPLKFRDKEWSSVWKKEKHSDLESWVGTKVPHGKINEDGFDY 197


>SLTB_BP933 (P09386) Shiga-like toxin II subunit B precursor
           (Verotoxin 2 subunit B) (SLT-IIB)
          Length = 89

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 14/46 (30%), Positives = 24/46 (51%)

Query: 58  GKLEEIMHAKSCSDLYKVVGEDFWSSTWCNSTAFEGKQLEGTRVTL 103
           GK+E   + +  +   KV G+++W+S W      +  QL G  VT+
Sbjct: 25  GKIEFSKYNEDDTFTVKVDGKEYWTSRWNLQPLLQSAQLTGMTVTI 70


>YBBP_ECOLI (P77504) Hypothetical protein ybbP
          Length = 804

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 14/46 (30%), Positives = 23/46 (49%), Gaps = 1/46 (2%)

Query: 194 ANMEFTGSIPQGFQVDWEAILNLDPNSFVDSVKSWLYPSLKVTTSW 239
           A+++ TG++  G +V W      + N  +D  + WL P LK    W
Sbjct: 179 ADVDKTGAVQPGSRVTWRYKFGGNENQ-LDGYEKWLLPQLKPEQRW 223


>POLG_ENMG3 (P32540) Genome polyprotein [Contains: Coat protein VP4
           (P1A); Coat protein VP2 (P1B); Coat protein VP3 (P1C);
           Coat protein VP1 (P1D)] (Fragment)
          Length = 901

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 17/63 (26%), Positives = 26/63 (40%), Gaps = 1/63 (1%)

Query: 70  SDLYKVVGEDFWSSTWCNSTAFEGKQLEGTRVTLVKMGQHGFDFAIRTPCTPARWEDYDA 129
           +DL  +   D W + W   T         T   ++ M   G DF+++ P +PA W     
Sbjct: 568 TDLVNITNADGWVTVW-QLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSPQGV 626

Query: 130 EMA 132
           E A
Sbjct: 627 ENA 629


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.319    0.134    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,252,626
Number of Sequences: 164201
Number of extensions: 1334452
Number of successful extensions: 2802
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2798
Number of HSP's gapped (non-prelim): 10
length of query: 263
length of database: 59,974,054
effective HSP length: 108
effective length of query: 155
effective length of database: 42,240,346
effective search space: 6547253630
effective search space used: 6547253630
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)