BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146559.3 + phase: 0 
         (130 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

SURE_PROMA (Q7VAV8) Acid phosphatase surE (EC 3.1.3.2)                 30  0.71
XPF_HUMAN (Q92889) DNA repair endonuclease XPF (EC 3.1.-.-) (DNA...    29  2.1
YOT3_CAEEL (P34649) Hypothetical protein ZK632.3 in chromosome III     28  2.7
NT4_XENLA (P24727) Neurotrophin-4 precursor (NT-4)                     28  3.5
TOP1_PYRFU (O73954) DNA topoisomerase I (EC 5.99.1.2) (Omega-pro...    28  4.6
SURE_PROMM (Q7V8I0) Acid phosphatase surE (EC 3.1.3.2)                 28  4.6
RGR1_CAEEL (Q03570) Mediator complex subunit rgr-1                     28  4.6
MDH_BURPS (P80536) Malate dehydrogenase (EC 1.1.1.37)                  28  4.6
MM21_YEAST (P38632) DNA repair protein MMS21                           27  7.9

>SURE_PROMA (Q7VAV8) Acid phosphatase surE (EC 3.1.3.2)
          Length = 262

 Score = 30.4 bits (67), Expect = 0.71
 Identities = 18/41 (43%), Positives = 23/41 (55%), Gaps = 6/41 (14%)

Query: 32  KTFRSASDSDAVWNQFLPSDISSIISHSPSLTNIPTKKDLY 72
           K   SA D    W    PSD+S I ++SPSLT  P + DL+
Sbjct: 216 KDLESAGDGPKEW----PSDVSQIETNSPSLT--PIQPDLF 250


>XPF_HUMAN (Q92889) DNA repair endonuclease XPF (EC 3.1.-.-) (DNA
           excision repair protein ERCC-4) (DNA-repair protein
           complementing XP-F cell) (Xeroderma pigmentosum group F
           complementing protein)
          Length = 905

 Score = 28.9 bits (63), Expect = 2.1
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 3/79 (3%)

Query: 19  TTPLDAGRLSVFSKTFRSASDSDAVWNQFLPSDISSIISHSPSLTNIPTKKDLYLALSDR 78
           T   +A  L ++ KTF   S ++ VW +F   D S  I  S      P  K+     S +
Sbjct: 414 TLGAEAFLLRLYRKTFEKDSKAEEVWMKFRKEDSSKRIRKSHKRPKDPQNKE---RASTK 470

Query: 79  PVIIDHDKKSIQLERKSGK 97
              +   K+ + L +  GK
Sbjct: 471 ERTLKKKKRKLTLTQMVGK 489


>YOT3_CAEEL (P34649) Hypothetical protein ZK632.3 in chromosome III
          Length = 510

 Score = 28.5 bits (62), Expect = 2.7
 Identities = 15/42 (35%), Positives = 24/42 (56%), Gaps = 2/42 (4%)

Query: 46  QFLPSDISSIISHSPSL--TNIPTKKDLYLALSDRPVIIDHD 85
           QFL  DI +II+    +   N+PT   L+  ++D  ++ DHD
Sbjct: 420 QFLTRDIQNIITFFTRIGTPNLPTYVQLFNLITDLDMVEDHD 461


>NT4_XENLA (P24727) Neurotrophin-4 precursor (NT-4)
          Length = 236

 Score = 28.1 bits (61), Expect = 3.5
 Identities = 37/127 (29%), Positives = 53/127 (41%), Gaps = 22/127 (17%)

Query: 11  CIAAIVSRTTPLDAGRLSVFSKTFRSA---SDSDAVWNQFLPSDISSIIS---------H 58
           C A   SRTT LD G       + R +   + S  + N F P D+SS  S         +
Sbjct: 17  CAAPFQSRTTDLDYGPDKTSEASDRQSVPNNFSHVLQNGFFP-DLSSTYSSMAGKDWNLY 75

Query: 59  SPSLT---NIPTKKDLYLALSDRPVIIDHDKKSIQLERKSGKKCYMLSAR-SLAI----- 109
           SP +T     P+   L     +  V  +   K+ +L+R SG     LS R  L++     
Sbjct: 76  SPRVTLSSEEPSGPPLLFLSEETVVHPEPANKTSRLKRASGSDSVSLSRRGELSVCDSVN 135

Query: 110 VWGDDRR 116
           VW  D+R
Sbjct: 136 VWVTDKR 142


>TOP1_PYRFU (O73954) DNA topoisomerase I (EC 5.99.1.2)
           (Omega-protein) (Relaxing enzyme) (Untwisting enzyme)
           (Swivelase) [Contains: Endonuclease PI-PfuI (EC 3.1.-.-)
           (Pfu topA intein)]
          Length = 1060

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 67  TKKDLYLALSDRPVIIDHDKKSIQLERKSGKKCYMLSARSL 107
           +++ LY+  S  PV  D D++S    R  G   Y++  +S+
Sbjct: 618 SRRKLYVETSQVPVFTDFDERSYDFPRILGGDIYIIGIKSI 658


>SURE_PROMM (Q7V8I0) Acid phosphatase surE (EC 3.1.3.2)
          Length = 269

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 6/41 (14%)

Query: 32  KTFRSASDSDAVWNQFLPSDISSIISHSPSLTNIPTKKDLY 72
           K   +A D    W    PSD++ I ++SPSLT  P + DL+
Sbjct: 216 KDLETAGDGPRDW----PSDVAQIETNSPSLT--PIQPDLF 250


>RGR1_CAEEL (Q03570) Mediator complex subunit rgr-1
          Length = 1374

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 10/89 (11%)

Query: 7   LPEGCIAAI--VSRTTPLDAGRLSVFS----KTFRSASDSDAVWNQFLPSDISSII---- 56
           L EGC  A+  VSR  P  AG   +FS    +T    +D  A+     P      +    
Sbjct: 867 LLEGCKIAVRDVSRYRPRCAGLFQLFSNIDSETTAIMNDEIAIPQSDNPQTAGPTMWTPE 926

Query: 57  SHSPSLTNIPTKKDLYLALSDRPVIIDHD 85
               SL   P + D  +A++ +P+++ HD
Sbjct: 927 QFMDSLDERPEEIDPRMAITSQPILMSHD 955


>MDH_BURPS (P80536) Malate dehydrogenase (EC 1.1.1.37)
          Length = 326

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 19/82 (23%)

Query: 42  AVWNQFLPSDISSIISHSPSLTNIPTKKDLYLALSDRPVI----------IDHDKKSIQL 91
           A  N+    D+  ++  +P+ TN       Y+A+   P +          +DH++   QL
Sbjct: 114 AALNEVASRDVKVLVVGNPANTNA------YIAMKSAPDLPKKNFTAMLRLDHNRALSQL 167

Query: 92  ERKSGKKCYMLSARSLAIVWGD 113
             KSGK   + S   LA VWG+
Sbjct: 168 AAKSGKP--VASIEKLA-VWGN 186


>MM21_YEAST (P38632) DNA repair protein MMS21
          Length = 267

 Score = 26.9 bits (58), Expect = 7.9
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 5/39 (12%)

Query: 73  LALSDRPVIIDHDKKSIQLERKSGKKCYMLSARSLAIVW 111
           +AL+D P+      KS+ L  KSGK  + L AR L+ ++
Sbjct: 1   MALNDNPI-----PKSVPLHPKSGKYFHNLHARDLSNIY 34


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.319    0.132    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,427,534
Number of Sequences: 164201
Number of extensions: 517957
Number of successful extensions: 1268
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1266
Number of HSP's gapped (non-prelim): 9
length of query: 130
length of database: 59,974,054
effective HSP length: 106
effective length of query: 24
effective length of database: 42,568,748
effective search space: 1021649952
effective search space used: 1021649952
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)