BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146557.10 - phase: 0
(2492 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
POL3_DROME (P04323) Retrovirus-related Pol polyprotein from tran... 233 4e-60
POL2_DROME (P20825) Retrovirus-related Pol polyprotein from tran... 215 1e-54
YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III 210 5e-53
POL4_DROME (P10394) Retrovirus-related Pol polyprotein from tran... 209 1e-52
POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from tran... 200 4e-50
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 191 2e-47
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 189 1e-46
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 189 1e-46
POLY_DROME (P10401) Retrovirus-related Pol polyprotein from tran... 177 3e-43
POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse transcript... 165 1e-39
POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic pro... 131 3e-29
YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II 129 8e-29
POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic pro... 129 8e-29
POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic pro... 129 8e-29
POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic pro... 125 2e-27
POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic pro... 125 2e-27
POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic prot... 119 1e-25
POL_RTBVP (P27502) Polyprotein (P194 protein) [Contains: Coat pr... 115 2e-24
POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic prot... 112 1e-23
POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;... 109 8e-23
>POL3_DROME (P04323) Retrovirus-related Pol polyprotein from
transposon 17.6 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1058
Score = 233 bits (595), Expect = 4e-60
Identities = 146/472 (30%), Positives = 246/472 (51%), Gaps = 20/472 (4%)
Query: 1410 KRKIIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDM-ALKIK 1468
K+++ LL++Y DI + + + +H I TK P + ++P +++
Sbjct: 170 KQRLCALLQKYHDIQYHEGDKLTFTNQ--TKHTINTKHNLPLYS---KYSYPQAYEQEVE 224
Query: 1469 SEVQKQIDAGFLMTVEYPEWVANIVPVPKKDG-----KVRMCVDFRDLNKASPKDNFPLP 1523
S++Q ++ G + T P + + I VPKK K R+ +D+R LN+ + D P+P
Sbjct: 225 SQIQDMLNQGIIRTSNSP-YNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPIP 283
Query: 1524 HIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGA 1583
++D ++ + F+ +D G++QI+M PE KT+F T G + Y MPFGL NA A
Sbjct: 284 NMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPA 343
Query: 1584 TYQRGMTTLFHDMTHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTF 1643
T+QR M + + +K VY+DD+IV ST ++H++ L +FE+L K L+L +KC F
Sbjct: 344 TFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEF 403
Query: 1644 GVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPRTEKQVRGFLGRLNYISRFISHMTATC 1703
+ LG +++ GI+ +P+K+ AI++ P P K+++ FLG Y +FI +
Sbjct: 404 LKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIA 463
Query: 1704 GPIFKLLRKNQPV-VWNDECQEAFDSIKKYLLEPPILVPPVEGRPLIMYLAVFDESMGCV 1762
P+ K L+KN + N E AF +K + E PIL P + + D ++G V
Sbjct: 464 KPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAV 523
Query: 1763 LGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRM 1822
L Q H + Y+S+ + E Y+ +EK A+ WA K RHYL+ + S
Sbjct: 524 LSQDG------HPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDH 577
Query: 1823 DPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDD 1874
P+ +++ K+ RW++ LSE+D K K K + +AD L+ L++
Sbjct: 578 QPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKG-KENCVADALSRIKLEE 628
>POL2_DROME (P20825) Retrovirus-related Pol polyprotein from
transposon 297 [Contains: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1059
Score = 215 bits (547), Expect = 1e-54
Identities = 131/437 (29%), Positives = 222/437 (49%), Gaps = 17/437 (3%)
Query: 1439 VEHRIPTKPECPPVRQK--LRRTHPDMALKIKSEVQKQIDAGFLMT----VEYPEWVANI 1492
++H + T P ++ L +TH ++++++VQ+ ++ G + P WV
Sbjct: 195 IKHVLNTTHNSPIYSKQYPLAQTHE---IEVENQVQEMLNQGLIRESNSPYNSPTWVVPK 251
Query: 1493 VPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKM 1552
P K R+ +D+R LN+ + D +P+P++D ++ + + F+ +D G++QI+M
Sbjct: 252 KPDASGANKYRVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEM 311
Query: 1553 SPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMTHKEVEVYVDDMIVKS 1612
E KT+F T G + Y MPFGL NA AT+QR M + + +K VY+DD+I+ S
Sbjct: 312 DEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFS 371
Query: 1613 TDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIRE 1672
T +H+ + +F +L L+L +KC F + LG IV+ GI+ +P KV+AI
Sbjct: 372 TSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVS 431
Query: 1673 MPAPRTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPV-VWNDECQEAFDSIKK 1731
P P +K++R FLG Y +FI + P+ L+K + E EAF+ +K
Sbjct: 432 YPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKA 491
Query: 1732 YLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYT 1791
++ PIL P + ++ + ++G VL Q H I ++S+ D E Y+
Sbjct: 492 LIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNG------HPISFISRTLNDHELNYS 545
Query: 1792 MLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIV 1851
+EK A+ WA K RHYL+ + S P++++ K+ RW++ LSEY
Sbjct: 546 AIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFK 605
Query: 1852 FKTQKAIKGSILADHLA 1868
K + S+ AD L+
Sbjct: 606 IDYIKGKENSV-ADALS 621
>YL52_CAEEL (P34431) Hypothetical protein F44E2.2 in chromosome III
Length = 2186
Score = 210 bits (534), Expect = 5e-53
Identities = 129/469 (27%), Positives = 237/469 (50%), Gaps = 11/469 (2%)
Query: 1406 EEGVKRKIIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMAL 1465
E G RKI ++ ++ D+FA S +++ E I K P+RQK R +
Sbjct: 899 ENGDDRKIWDVIEQFQDVFAISDDELGRNSG--TECVIELKEGAEPIRQKPRPIPLALKP 956
Query: 1466 KIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHI 1525
+I+ +QK ++ + + P W + +V V KKDG +RMC+D+R +NK + PLP+I
Sbjct: 957 EIRKMIQKMLNQKVIRESKSP-WSSPVVLVKKKDGSIRMCIDYRKVNKVVKNNAHPLPNI 1015
Query: 1526 DVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATY 1585
+ + + A K+++ D +G+ QI + + +E T+F F + V+PFGL+ + A +
Sbjct: 1016 EATLQSLAGKKLYTVFDMIAGFWQIPLDEKSKEITAFAIGSELFEWNVLPFGLVISPALF 1075
Query: 1586 QRGMTTLFHDMTHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGV 1645
Q M + D+ VYVDD+++ S D EQH++ + + R+RK ++L +KC
Sbjct: 1076 QGTMEEIIGDLLGVCAFVYVDDLLIASKDMEQHLQDVKEALTRIRKSGMKLRASKCHIAK 1135
Query: 1646 RSGKLLGFIVSQKGIEVDPDKVRAIREMPAPRTEKQVRGFLGRLNYISRFISHMTATCGP 1705
+ + LG V+ G+E K +++ P K+++ FLG + Y +FI +
Sbjct: 1136 KEVEYLGHKVTLDGVETQEVKTDKMKQFSRPTNVKELQSFLGLVGYYRKFILNFAQIASS 1195
Query: 1706 IFKLLRKNQPVVWNDECQEAFDSIKKYLLEPPILV-PPVEG-----RPLIMYLAVFDESM 1759
+ L+ +W E + AF +KK + + P+L P VE RP ++Y + +
Sbjct: 1196 LTSLISAKVAWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAALKGDRPFMIYTDASRKGI 1255
Query: 1760 GCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLI 1819
G VL Q+ G ++H I + SK + ETRY + + A+ +A +R + + +
Sbjct: 1256 GAVLAQEGPDG-QQHPIAFASKALSPAETRYHITDLEALAMMFALRRFKTIIYGTAITVF 1314
Query: 1820 SRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLA 1868
+ P+ + + + + ++ RW + + E+D+ A K + +AD L+
Sbjct: 1315 TDHKPLISLLKGSPLADRLWRWSIEILEFDVKI-VYLAGKANAVADALS 1362
Score = 106 bits (264), Expect = 9e-22
Identities = 90/339 (26%), Positives = 149/339 (43%), Gaps = 22/339 (6%)
Query: 2130 VDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYAD 2189
V E L+ ++H+G H M R + R +YW M R C KC D
Sbjct: 1460 VPEKIRTPLLKELHEGMLAGHFGIKKMWRMVHRK-FYWPQMRVCVENCVRTCAKCLCAND 1518
Query: 2190 KIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVT 2249
+ +L +P + D++ + G+R+IL ID FTK+ A +
Sbjct: 1519 HSKLTS-SLTPYRMTFPLEIVACDLMD--VGLSVQGNRYILTIIDLFTKYGTAVPIPDKK 1575
Query: 2250 KQVVAK-FIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGA 2308
+ V K F++ I +P K++TD G N + KIEH + Y + NGA
Sbjct: 1576 AETVLKAFVERWAIGEGRIPLKLLTDQGKEFVNGLFAQFTHMLKIEHITTKGYNSRANGA 1635
Query: 2309 VEAANKNIKRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEV 2368
VE NK I I++K +W + + YA++ Y V +TG TP L++G + + PLE+
Sbjct: 1636 VERFNKTIMHIMKKKTAVPMEWDDQVVYAVYAYNNCVHENTGETPMFLMHGRDVMGPLEM 1695
Query: 2369 EIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVRPREF 2428
I A + E + ++ + L + + + AM +SY K+ FD+K ++
Sbjct: 1696 SGEDAVGINYADMDEYKHLLTQ-ELLKVQKIAKEHAMREQESY----KSLFDQKYASKKH 1750
Query: 2429 K--------VGELVLKRRISQQPDPRGKWAPNYEGPYVV 2459
+ + E+ ++ +Q P KW+ GPY V
Sbjct: 1751 RFPQPGSRVLLEIPSEKLGAQCPKLVNKWS----GPYRV 1785
>POL4_DROME (P10394) Retrovirus-related Pol polyprotein from
transposon 412 [Contains: Protease (EC 3.4.23.-); Reverse
transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1237
Score = 209 bits (531), Expect = 1e-52
Identities = 139/465 (29%), Positives = 231/465 (48%), Gaps = 13/465 (2%)
Query: 1410 KRKIIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKS 1469
K ++ + EY DIFA E P + + ++ K + P + R H + +I++
Sbjct: 276 KSQLENICSEYIDIFA--LESEPITVNNLYKQQLRLKDDEPVYTKNYRSPHSQVE-EIQA 332
Query: 1470 EVQKQIDAGFLMTVEYPEWVANIVPVPKKDG------KVRMCVDFRDLNKASPKDNFPLP 1523
+VQK I ++ ++ + ++ VPKK K R+ +D+R +NK D FPLP
Sbjct: 333 QVQKLIKDK-IVEPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKKLLADKFPLP 391
Query: 1524 HIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGA 1583
ID ++D ++K FS +D SG++QI++ R+ TSF T G++ + +PFGL A
Sbjct: 392 RIDDILDQLGRAKYFSCLDLMSGFHQIELDEGSRDITSFSTSNGSYRFTRLPFGLKIAPN 451
Query: 1584 TYQRGMTTLFHDMTHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTF 1643
++QR MT F + + +Y+DD+IV E+ ++ LT++F + R+Y L+L+P KC+F
Sbjct: 452 SFQRMMTIAFSGIEPSQAFLYMDDLIVIGCSEKHMLKNLTEVFGKCREYNLKLHPEKCSF 511
Query: 1644 GVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPRTEKQVRGFLGRLNYISRFISHMTATC 1703
+ LG + KGI D K I+ P P R F+ NY RFI +
Sbjct: 512 FMHEVTFLGHKCTDKGILPDDKKYDVIQNYPVPHDADSARRFVAFCNYYRRFIKNFADYS 571
Query: 1704 GPIFKLLRKNQPVVWNDECQEAFDSIKKYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL 1763
I +L +KN P W DECQ+AF +K L+ P +L P + + ++ G VL
Sbjct: 572 RHITRLCKKNVPFEWTDECQKAFIHLKSQLINPTLLQYPDFSKEFCITTDASKQACGAVL 631
Query: 1764 GQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMD 1823
Q + + Y S+ FT E+ + E+ A+ WA R Y+ + +
Sbjct: 632 TQNH--NGHQLPVAYASRAFTKGESNKSTTEQELAAIHWAIIHFRPYIYGKHFTVKTDHR 689
Query: 1824 PIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLA 1868
P+ Y+F + K+ R ++ L EY+ + K K + +AD L+
Sbjct: 690 PLTYLFSMVNPSSKLTRIRLELEEYNFTVEYLKG-KDNHVADALS 733
Score = 124 bits (311), Expect = 3e-27
Identities = 101/381 (26%), Positives = 170/381 (44%), Gaps = 29/381 (7%)
Query: 2120 RNYDMVLLRCV----DEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCY 2175
+N + LL V +E E E ++ +HD TG T + ++ YYW M
Sbjct: 874 KNLKVALLNPVTQINNEKEKEAILSTLHDDPIQGGHTGITKTLAKVKRHYYWKNMSKYIK 933
Query: 2176 QYARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDY 2235
+Y RKC KCQ H + F +D IG + PK+ NG+ + + I
Sbjct: 934 EYVRKCQKCQKAKTTKHTKTPMTITETPEHAFDRVVVDTIGPL-PKSENGNEYAVTLICD 992
Query: 2236 FTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEH 2295
TK++ A N + + VAK I + I +YG ITD GT N+++ LC+ KI++
Sbjct: 993 LTKYLVAIPIANKSAKTVAKAIFESFILKYGPMKTFITDMGTEYKNSIITDLCKYLKIKN 1052
Query: 2296 HNSSPYRPQMNGAVEAANKNIKRIVQKMVTTYK-DWHEMLPYALHGYRTTVRSSTGATPF 2354
S+ + Q G VE +++ + ++ ++T K DW L Y ++ + TT P+
Sbjct: 1053 ITSTAHHHQTVGVVERSHRTLNEYIRSYISTDKTDWDVWLQYFVYCFNTTQSMVHNYCPY 1112
Query: 2355 SLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARG----QS 2410
LV+G + LP KL E + D + + A AR ++
Sbjct: 1113 ELVFGRTSNLPKHFN----------KLHSIEPIYNIDDYAKESKYRLEVAYARARKLLEA 1162
Query: 2411 YQARMKTAFDKKVRPREFKVGELVLKRRISQQPDPRGKWAPNYEGPYVVKK-AFSGGALI 2469
++ + K +D KV+ E +VG+ VL R + K Y GPY ++ + +
Sbjct: 1163 HKEKNKENYDLKVKDIELEVGDKVLLRN-----EVGHKLDFKYTGPYKIESIGDNNNITL 1217
Query: 2470 LTHMDGVELPNPVNADIVKKY 2490
LT+ + ++ V+ D +KK+
Sbjct: 1218 LTNKNKKQI---VHKDRLKKF 1235
>POL5_DROME (Q8I7P9) Retrovirus-related Pol polyprotein from
transposon opus [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1003
Score = 200 bits (509), Expect = 4e-50
Identities = 141/493 (28%), Positives = 234/493 (46%), Gaps = 34/493 (6%)
Query: 1401 IGATLEEGVKRKIIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTH 1460
+ A +G + + LL E+P IF P L M VE + + +++
Sbjct: 76 LAAEHPDGTQEILNSLLGEFPRIFE------PPLSGMSVETAVKAEIRTNTQDPIYAKSY 129
Query: 1461 PDMALKIKSEVQKQIDA----GFLMTVEYPE----WVANIVPVPKKDGKVRMCVDFRDLN 1512
P + ++ EV++QID G + P W+ P P + + RM VDF+ LN
Sbjct: 130 P-YPVNMRGEVERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLN 188
Query: 1513 KASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYK 1572
+ D +P+P I+ + + +K F+ +D SG++QI M D KT+F T G + +
Sbjct: 189 TVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFL 248
Query: 1573 VMPFGLINAGATYQRGMTTLFHDMTHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKY 1632
+PFGL NA A +QR + + + K VY+DD+IV S D + H + L + L K
Sbjct: 249 RLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKA 308
Query: 1633 KLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPRTEKQVRGFLGRLNYI 1692
L++N K F + LG+IV+ GI+ DP KVRAI EMP P + K+++ FLG +Y
Sbjct: 309 NLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYY 368
Query: 1693 SRFISHMTATCGPIFKLLR-----------KNQPVVWNDECQEAFDSIKKYLLEPPILVP 1741
+FI P+ L R P+ ++ ++F+ +K L IL
Sbjct: 369 RKFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAF 428
Query: 1742 PVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALA 1801
P +P + + ++G VL Q D+ ++ I Y+S+ E Y +EK A+
Sbjct: 429 PCFTKPFHLTTDASNWAIGAVLSQDDQ--GRDRPIAYISRSLNKTEENYATIEKEMLAII 486
Query: 1802 WAAKRLRHYLVN-HTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEY--DIVFKTQKAI 1858
W+ LR YL T + + P+ + K+ RW+ + EY ++++K K+
Sbjct: 487 WSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGKS- 545
Query: 1859 KGSILADHLAYQP 1871
+++AD L+ P
Sbjct: 546 --NVVADALSRIP 556
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 191 bits (485), Expect = 2e-47
Identities = 115/407 (28%), Positives = 210/407 (51%), Gaps = 21/407 (5%)
Query: 1495 VPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSP 1554
VPKK+G +RM VD++ LNK + +PLP I+ L+ S +F+ +D S Y+ I++
Sbjct: 455 VPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRK 514
Query: 1555 EDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMTHKEVEVYVDDMIVKSTD 1614
D K +F P G F Y VMP+G+ A A +Q + T+ + V Y+DD+++ S
Sbjct: 515 GDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKS 574
Query: 1615 EEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMP 1674
E +HV+++ + ++L+ L +N KC F K +G+ +S+KG + + + +
Sbjct: 575 ESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWK 634
Query: 1675 APRTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKKYLL 1734
P+ K++R FLG +NY+ +FI + P+ LL+K+ W +A ++IK+ L+
Sbjct: 635 QPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLV 694
Query: 1735 EPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLE 1794
PP+L + +++ D ++G VL Q+ + K + + Y S K + + Y++ +
Sbjct: 695 SPPVLRHFDFSKKILLETDASDVAVGAVLSQKHD-DDKYYPVGYYSAKMSKAQLNYSVSD 753
Query: 1795 KTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKI-----------ARWQM 1843
K A+ + K RHYL S ++P K + + + G+I ARWQ+
Sbjct: 754 KEMLAIIKSLKHWRHYLE-------STIEPFKILTDHRNLIGRITNESEPENKRLARWQL 806
Query: 1844 LLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYL 1890
L +++ + + +AD L+ + +D+ +PI D D I ++
Sbjct: 807 FLQDFNFEINYRPG-SANHIADALS-RIVDETEPIPKDSEDNSINFV 851
Score = 101 bits (251), Expect = 3e-20
Identities = 114/505 (22%), Positives = 211/505 (41%), Gaps = 53/505 (10%)
Query: 1965 IDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQ 2024
++ I+ I D +I +I E E + +L ++ + + E+++ P N
Sbjct: 770 LESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDF-----NFEINYRPGSANH 824
Query: 2025 MADALATLSSMFRVNHWNDVPLIKVQRLERPSHVFAIGDVIDQAGENVVDYKPWYYDIKQ 2084
+ADAL+ + P+ K + V I D + V +Y D K
Sbjct: 825 IADALSRIVD-------ETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTN---DTKL 874
Query: 2085 FLLSREYPPGASKQDKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHD 2144
L + +DK+ + L DG ++ + D +LL D ++ H+
Sbjct: 875 LNL-------LNNEDKRVEENIQ---LKDGLLINSK--DQILLPN-DTQLTRTIIKKYHE 921
Query: 2145 GTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALN-VMSS 2203
H ++ +LR + W + +Y + CH CQI + H P L + S
Sbjct: 922 EGKLIHPGIELLTNIILRR-FTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPS 980
Query: 2204 PWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYT-NVTKQVVAKFIKNNII 2262
P+ +D I + S+G+ + V +D F+K T ++T + A+ +I
Sbjct: 981 ERPWESLSMDFITALPE--SSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVI 1038
Query: 2263 CRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQK 2322
+G P +II DN + + ++ S PYRPQ +G E N+ ++++++
Sbjct: 1039 AYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRC 1098
Query: 2323 MVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKL 2381
+ +T+ + W + + Y + S+T TPF +V+ L +E+PS +
Sbjct: 1099 VCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALS-PLELPSFSDKTDENS 1157
Query: 2382 SEA-EWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVRP-REFKVGELVL-KRR 2438
E + Q+ + LN + +MK FD K++ EF+ G+LV+ KR
Sbjct: 1158 QETIQVFQTVKEHLN--------------TNNIKMKKYFDMKIQEIEEFQPGDLVMVKRT 1203
Query: 2439 ISQQPDPRGKWAPNYEGP-YVVKKA 2462
+ K AP++ GP YV++K+
Sbjct: 1204 KTGFLHKSNKLAPSFAGPFYVLQKS 1228
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 189 bits (479), Expect = 1e-46
Identities = 114/407 (28%), Positives = 211/407 (51%), Gaps = 21/407 (5%)
Query: 1495 VPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSP 1554
VPKK+G +RM VD++ LNK + +PLP I+ L+ S +F+ +D S Y+ I++
Sbjct: 455 VPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRK 514
Query: 1555 EDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMTHKEVEVYVDDMIVKSTD 1614
D K +F P G F Y VMP+G+ A A +Q + T+ ++ V Y+D++++ S
Sbjct: 515 GDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKS 574
Query: 1615 EEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMP 1674
E +HV+++ + ++L+ L +N KC F K +G+ +S+KG + + + +
Sbjct: 575 ESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWK 634
Query: 1675 APRTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKKYLL 1734
P+ K++R FLG +NY+ +FI + P+ LL+K+ W +A ++IK+ L+
Sbjct: 635 QPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLV 694
Query: 1735 EPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLE 1794
PP+L + +++ D ++G VL Q+ + K + + Y S K + + Y++ +
Sbjct: 695 SPPVLRHFDFSKKILLETDASDVAVGAVLSQKHD-DDKYYPVGYYSAKMSKAQLNYSVSD 753
Query: 1795 KTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKI-----------ARWQM 1843
K A+ + K RHYL S ++P K + + + G+I ARWQ+
Sbjct: 754 KEMLAIIKSLKHWRHYLE-------STIEPFKILTDHRNLIGRITNESEPENKRLARWQL 806
Query: 1844 LLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYL 1890
L +++ + + +AD L+ + +D+ +PI D D I ++
Sbjct: 807 FLQDFNFEINYRPG-SANHIADALS-RIVDETEPIPKDSEDNSINFV 851
Score = 101 bits (251), Expect = 3e-20
Identities = 114/505 (22%), Positives = 211/505 (41%), Gaps = 53/505 (10%)
Query: 1965 IDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQ 2024
++ I+ I D +I +I E E + +L ++ + + E+++ P N
Sbjct: 770 LESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDF-----NFEINYRPGSANH 824
Query: 2025 MADALATLSSMFRVNHWNDVPLIKVQRLERPSHVFAIGDVIDQAGENVVDYKPWYYDIKQ 2084
+ADAL+ + P+ K + V I D + V +Y D K
Sbjct: 825 IADALSRIVD-------ETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTN---DTKL 874
Query: 2085 FLLSREYPPGASKQDKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHD 2144
L + +DK+ + L DG ++ + D +LL D ++ H+
Sbjct: 875 LNL-------LNNEDKRVEENIQ---LKDGLLINSK--DQILLPN-DTQLTRTIIKKYHE 921
Query: 2145 GTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALN-VMSS 2203
H ++ +LR + W + +Y + CH CQI + H P L + S
Sbjct: 922 EGKLIHPGIELLTNIILRR-FTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPS 980
Query: 2204 PWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYT-NVTKQVVAKFIKNNII 2262
P+ +D I + S+G+ + V +D F+K T ++T + A+ +I
Sbjct: 981 ERPWESLSMDFITALPE--SSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVI 1038
Query: 2263 CRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQK 2322
+G P +II DN + + ++ S PYRPQ +G E N+ ++++++
Sbjct: 1039 AYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRC 1098
Query: 2323 MVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKL 2381
+ +T+ + W + + Y + S+T TPF +V+ L +E+PS +
Sbjct: 1099 VCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALS-PLELPSFSDKTDENS 1157
Query: 2382 SEA-EWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVRP-REFKVGELVL-KRR 2438
E + Q+ + LN + +MK FD K++ EF+ G+LV+ KR
Sbjct: 1158 QETIQVFQTVKEHLN--------------TNNIKMKKYFDMKIQEIEEFQPGDLVMVKRT 1203
Query: 2439 ISQQPDPRGKWAPNYEGP-YVVKKA 2462
+ K AP++ GP YV++K+
Sbjct: 1204 KTGFLHKSNKLAPSFAGPFYVLQKS 1228
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 189 bits (479), Expect = 1e-46
Identities = 114/407 (28%), Positives = 211/407 (51%), Gaps = 21/407 (5%)
Query: 1495 VPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSP 1554
VPKK+G +RM VD++ LNK + +PLP I+ L+ S +F+ +D S Y+ I++
Sbjct: 455 VPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRK 514
Query: 1555 EDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMTHKEVEVYVDDMIVKSTD 1614
D K +F P G F Y VMP+G+ A A +Q + T+ ++ V Y+D++++ S
Sbjct: 515 GDEHKLAFRCPRGVFEYLVMPYGISIAPAHFQYFINTILGEVKESHVVCYMDNILIHSKS 574
Query: 1615 EEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMP 1674
E +HV+++ + ++L+ L +N KC F K +G+ +S+KG + + + +
Sbjct: 575 ESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWK 634
Query: 1675 APRTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKKYLL 1734
P+ K++R FLG +NY+ +FI + P+ LL+K+ W +A ++IK+ L+
Sbjct: 635 QPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLV 694
Query: 1735 EPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLE 1794
PP+L + +++ D ++G VL Q+ + K + + Y S K + + Y++ +
Sbjct: 695 SPPVLRHFDFSKKILLETDASDVAVGAVLSQKHD-DDKYYPVGYYSAKMSKAQLNYSVSD 753
Query: 1795 KTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKI-----------ARWQM 1843
K A+ + K RHYL S ++P K + + + G+I ARWQ+
Sbjct: 754 KEMLAIIKSLKHWRHYLE-------STIEPFKILTDHRNLIGRITNESEPENKRLARWQL 806
Query: 1844 LLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYL 1890
L +++ + + +AD L+ + +D+ +PI D D I ++
Sbjct: 807 FLQDFNFEINYRPG-SANHIADALS-RIVDETEPIPKDSEDNSINFV 851
Score = 101 bits (251), Expect = 3e-20
Identities = 114/505 (22%), Positives = 211/505 (41%), Gaps = 53/505 (10%)
Query: 1965 IDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQ 2024
++ I+ I D +I +I E E + +L ++ + + E+++ P N
Sbjct: 770 LESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDF-----NFEINYRPGSANH 824
Query: 2025 MADALATLSSMFRVNHWNDVPLIKVQRLERPSHVFAIGDVIDQAGENVVDYKPWYYDIKQ 2084
+ADAL+ + P+ K + V I D + V +Y D K
Sbjct: 825 IADALSRIVD-------ETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTN---DTKL 874
Query: 2085 FLLSREYPPGASKQDKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHD 2144
L + +DK+ + L DG ++ + D +LL D ++ H+
Sbjct: 875 LNL-------LNNEDKRVEENIQ---LKDGLLINSK--DQILLPN-DTQLTRTIIKKYHE 921
Query: 2145 GTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALN-VMSS 2203
H ++ +LR + W + +Y + CH CQI + H P L + S
Sbjct: 922 EGKLIHPGIELLTNIILRR-FTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPS 980
Query: 2204 PWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYT-NVTKQVVAKFIKNNII 2262
P+ +D I + S+G+ + V +D F+K T ++T + A+ +I
Sbjct: 981 ERPWESLSMDFITALPE--SSGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVI 1038
Query: 2263 CRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQK 2322
+G P +II DN + + ++ S PYRPQ +G E N+ ++++++
Sbjct: 1039 AYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRC 1098
Query: 2323 MVTTYKD-WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKL 2381
+ +T+ + W + + Y + S+T TPF +V+ L +E+PS +
Sbjct: 1099 VCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALS-PLELPSFSDKTDENS 1157
Query: 2382 SEA-EWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVRP-REFKVGELVL-KRR 2438
E + Q+ + LN + +MK FD K++ EF+ G+LV+ KR
Sbjct: 1158 QETIQVFQTVKEHLN--------------TNNIKMKKYFDMKIQEIEEFQPGDLVMVKRT 1203
Query: 2439 ISQQPDPRGKWAPNYEGP-YVVKKA 2462
+ K AP++ GP YV++K+
Sbjct: 1204 KTGFLHKSNKLAPSFAGPFYVLQKS 1228
>POLY_DROME (P10401) Retrovirus-related Pol polyprotein from
transposon gypsy [Contains: Reverse transcriptase (EC
2.7.7.49); Endonuclease]
Length = 1035
Score = 177 bits (450), Expect = 3e-43
Identities = 120/388 (30%), Positives = 195/388 (49%), Gaps = 22/388 (5%)
Query: 1503 RMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSF 1562
R+ +DFR LN+ + D +P+P I +++ N ++K F+ +D SGY+QI ++ DREKTSF
Sbjct: 238 RLVIDFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSF 297
Query: 1563 ITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMTHKEVEVYVDDMIVKSTDEEQHVEYL 1622
G + + +PFGL NA + +QR + + + K VYVDD+I+ S +E HV ++
Sbjct: 298 SVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHI 357
Query: 1623 TKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPRTEKQV 1682
+ + L +R++ K F S + LGFIVS+ G + DP+KV+AI+E P P +V
Sbjct: 358 DTVLKCLIDANMRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKV 417
Query: 1683 RGFLGRLNYISRFISHMTATCGPIFKLLR-----------KNQPVVWNDECQEAFDSIKK 1731
R FLG +Y FI A PI +L+ K PV +N+ + AF ++
Sbjct: 418 RSFLGLASYYRVFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRN 477
Query: 1732 YLL-EPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRY 1790
L E IL P +P + +G VL Q+ I +S+ E Y
Sbjct: 478 ILASEDVILKYPDFKKPFDLTTDASASGIGAVLSQEG------RPITMISRTLKQPEQNY 531
Query: 1791 TMLEKTCCALAWAAKRLRHYLV-NHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYD 1849
E+ A+ WA +L+++L + + + P+ + KI RW+ + +++
Sbjct: 532 ATNERELLAIVWALGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHN 591
Query: 1850 I-VFKTQKAIKGSILADHLAYQPLDDYQ 1876
VF K K + +AD L+ Q L+ Q
Sbjct: 592 AKVF--YKPGKENFVADALSRQNLNALQ 617
>POL_FOAMV (P14350) Pol polyprotein [Contains: Reverse
transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4)
(RT); Integrase (IN)]
Length = 886
Score = 165 bits (418), Expect = 1e-39
Identities = 202/888 (22%), Positives = 360/888 (39%), Gaps = 75/888 (8%)
Query: 1492 IVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIK 1551
+ PVPK DG+ RM +D+R++NK P H ++ + K + +D +G+
Sbjct: 5 VYPVPKPDGRWRMVLDYREVNKTIPLTAAQNQHSAGILATIVRQKYKTTLDLANGFWAHP 64
Query: 1552 MSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMTHKEVEVYVDDMIVK 1611
++PE T+F +C+ +P G +N+ A + + L ++ + V+VYVDD+ +
Sbjct: 65 ITPESYWLTAFTWQGKQYCWTRLPQGFLNSPALFTADVVDLLKEIPN--VQVYVDDIYLS 122
Query: 1612 STDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIR 1671
D ++HV+ L K+F+ L + ++ K G ++ + LGF ++++G + +
Sbjct: 123 HDDPKEHVQQLEKVFQILLQAGYVVSLKKSEIGQKTVEFLGFNITKEGRGLTDTFKTKLL 182
Query: 1672 EMPAPRTEKQVRGFLGRLNYISRFISHMTATCGPIFKLL--RKNQPVVWNDECQEAFDSI 1729
+ P+ KQ++ LG LN+ FI + P++ L+ K + + W++E + + +
Sbjct: 183 NITPPKDLKQLQSILGLLNFARNFIPNFAELVQPLYNLIASAKGKYIEWSEENTKQLNMV 242
Query: 1730 KKYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETR 1789
+ L L + + L++ + S G V +ETGKK I YL+ F+ E +
Sbjct: 243 IEALNTASNLEERLPEQRLVIKVNT-SPSAGYV-RYYNETGKK--PIMYLNYVFSKAELK 298
Query: 1790 YTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIF-----EKAAVTGKIARWQML 1844
++MLEK + A + + + S + + I E+ A+ + W
Sbjct: 299 FSMLEKLLTTMHKALIKAMDLAMGQEILVYSPIVSMTKIQKTPLPERKALPIRWITWMTY 358
Query: 1845 LSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLIEEGP 1904
L + I F K + H+ P++ E + Y + P
Sbjct: 359 LEDPRIQFHYDKTLPE---LKHIPDVYTSSQSPVKHPSQYEGVFYTDGSAI------KSP 409
Query: 1905 DPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEA 1964
DP N G GI P+ + + L T MAE A F ++A
Sbjct: 410 DPTKS---------NNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKA 460
Query: 1965 IDMRIKHLDIYGDSALVINQIKGEWETHHAKLIPYRDYARRLLTYFTKVELHHIPRDENQ 2024
+ + L + DS V E +PY + K L HI + ++
Sbjct: 461 LKIPGPVL-VITDSFYVAESANKE--------LPY--WKSNGFVNNKKKPLKHISKWKS- 508
Query: 2025 MADALATLSSMFRVNHWNDVPL-IKVQRLERPSHVFAIGDVIDQAGENVVD---YKPWYY 2080
+A+ L ++ + H + L I V L+ A+ D + G VV+ KP
Sbjct: 509 IAECL-SMKPDITIQHEKGISLQIPVFILKGN----ALADKLATQGSYVVNCNTKKPNLD 563
Query: 2081 DIKQFLLSREYPPGASKQDKKTLRRLASRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMH 2140
LL Y G KQ + FL DG + R + ++ + + ++++
Sbjct: 564 AELDQLLQGHYIKGYPKQ--------YTYFLEDGKVKVSRPEGVKII--PPQSDRQKIVL 613
Query: 2141 DVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNV 2200
H+ TG + + Y+W M D + +C +C I L
Sbjct: 614 QAHN----LAHTGREATLLKIANLYWWPNMRKDVVKQLGRCQQCLITNASNKASGPILRP 669
Query: 2201 MSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFT--KWVEAASYTNVTKQVVAKFIK 2258
PF + ID IG + P S G+ ++LV +D T W+ Y A
Sbjct: 670 DRPQKPFDKFFIDYIGPLPP--SQGYLYVLVVVDGMTGFTWL----YPTKAPSTSATVKS 723
Query: 2259 NNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKR 2318
N++ +P I +D G ++ +E I S+PY PQ VE N +IKR
Sbjct: 724 LNVLTSIAIPKVIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSGSKVERKNSDIKR 783
Query: 2319 IVQK-MVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLP 2365
++ K +V W+++LP T TP L++G+++ P
Sbjct: 784 LLTKLLVGRPTKWYDLLPVVQLALNNTYSPVLKYTPHQLLFGIDSNTP 831
>POL_CAMVE (Q02964) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 679
Score = 131 bits (329), Expect = 3e-29
Identities = 136/524 (25%), Positives = 225/524 (41%), Gaps = 36/524 (6%)
Query: 1350 FPVYEAKDEEGDGIPYEITRLLEQEKKAIQPHQEEIELVNIGTEENKREIKIGATLEEGV 1409
+PV+ AK + E LE KK + Q E VNI T + + +K A L EG
Sbjct: 140 YPVHIAKLTRAVRVGTE--GFLESMKKRSKTQQPEP--VNISTNKIENPLKEIAILSEG- 194
Query: 1410 KRKIIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIK- 1468
R++ + E++ L+ + E+ + ++ ++ + P A+K+K
Sbjct: 195 -RRLSEEKLFITQQRMQKIEEL--LEKVCSENPLDPNKTKQWMKASIKLSDPSKAIKVKP 251
Query: 1469 --------SEVQKQIDAGFLMTVEYPEWVANIVPV-------PKKDGKVRMCVDFRDLNK 1513
E KQI + V P ++ P K+ GK RM V+++ +NK
Sbjct: 252 MKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNK 311
Query: 1514 ASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKV 1573
A+ D + LP+ D L+ K+FS D SG+ Q+ + E R T+F P G + + V
Sbjct: 312 ATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNV 371
Query: 1574 MPFGLINAGATYQRGMTTLFHDMTHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYK 1633
+PFGL A + +QR M F + K VYVDD++V S +EE H+ ++ + ++ ++
Sbjct: 372 VPFGLKQAPSIFQRHMDEAFR-VFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHG 430
Query: 1634 LRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMP-APRTEKQVRGFLGRLNYI 1692
+ L+ K + LG + + + + I + P +KQ++ FLG L Y
Sbjct: 431 IILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYA 490
Query: 1693 SRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKKYLLEPPILVPPVEGRPLIMYL 1752
S +I + P+ L++N P W E +KK L P L P+ LI+
Sbjct: 491 SDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIET 550
Query: 1753 AVFDESMGCVLG--QQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHY 1810
D+ G +L + +E E Y S F E Y +K A+ K+ Y
Sbjct: 551 DASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAERNYHSNDKETLAVINTIKKFSIY 610
Query: 1811 LVNHTTWLISRMDP------IKYIFEKAAVTGKIARWQMLLSEY 1848
L + R D + ++ + G+ RWQ LS Y
Sbjct: 611 LT--PVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHY 652
>YRD6_CAEEL (Q09575) Hypothetical protein K02A2.6 in chromosome II
Length = 1268
Score = 129 bits (325), Expect = 8e-29
Identities = 90/297 (30%), Positives = 151/297 (50%), Gaps = 12/297 (4%)
Query: 1403 ATLEEGVKRKIIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPD 1462
+T E R + L ++P++F +D GL + T+ PV ++ R
Sbjct: 397 STSETEASRLEVMLKNDFPEVF----KDGLGLCTK-EKAEFRTEENAVPVFKRARPVPYG 451
Query: 1463 MALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKD-GKVRMCVDFR--DLNKASPKDN 1519
+++E+ + + G ++ + Y +W A IV + KK GK+R+C DF+ LN A +
Sbjct: 452 SLEAVETELNRLQEMGVIVPITYAKWAAPIVVIKKKGTGKIRVCADFKCSGLNAALKDEF 511
Query: 1520 FPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLI 1579
PLP + + + V+S +D Y Q+++ E ++ T G F Y M FGL
Sbjct: 512 HPLPTSEDIFSRL-KGTVYSQIDLKDAYLQVELDEEAQKLAVINTHRGIFKYLRMTFGLK 570
Query: 1580 NAGATYQRGMTTLFHDMTHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPN 1639
A A++Q+ M + +T V VY DD+I+ ++ E+H + L ++FER ++Y R++
Sbjct: 571 PAPASFQKIMDKMVSGLTG--VAVYWDDIIISASSIEEHEKILRELFERFKEYGFRVSAE 628
Query: 1640 KCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPRTEKQVRGFLGRLNYISRFI 1696
KC F + LGF V + G D K AIR M AP +KQ+ FLG +++SR +
Sbjct: 629 KCAFAQKQVTFLGF-VDEHGRRPDSKKTEAIRSMKAPTDQKQLASFLGAADWLSRMM 684
Score = 87.4 bits (215), Expect = 4e-16
Identities = 79/320 (24%), Positives = 136/320 (41%), Gaps = 44/320 (13%)
Query: 2103 LRRLASRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLR 2162
L+ + LLD ++ ++ ++L+ +H+ H G ++ R
Sbjct: 763 LKLIHGCLLLDDRVIVPKSLQKIVLK---------QLHEGHPGI--------VQMKQKAR 805
Query: 2163 AGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWPF--SMWG---IDMIGR 2217
+ +W ++ D R C+ CQ + V P +PWP + W ID G
Sbjct: 806 SFVFWRGLDSDIENMVRHCNNCQENSKMPRVVP------LNPWPVPEAPWKRIHIDFAGP 859
Query: 2218 IEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGT 2277
+ NG ++LV +D TK+ E T V + I +G P II+DNGT
Sbjct: 860 L-----NGC-YLLVVVDAKTKYAEV-KLTRSISAVTTIDLLEEIFSIHGYPETIISDNGT 912
Query: 2278 NLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVTTYKDWHEMLPYA 2337
L +++ +C+ IEH S+ Y P+ NGA E +KR + K+ ++L
Sbjct: 913 QLTSHLFAQMCQSHGIEHKTSAVYYPRSNGAAERFVDTLKRGIAKIKGEGSVNQQILNKF 972
Query: 2338 LHGYRTTVRSS-TGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNL 2396
L YR T S+ G+TP +G + + + +P+ RV+ KL++ Q N+
Sbjct: 973 LISYRNTPHSALNGSTPAECHFGRKIRTTMSLLMPTDRVLKVPKLTQY--------QQNM 1024
Query: 2397 IEEKRMDAMARGQSYQARMK 2416
+ AR +++Q K
Sbjct: 1025 KHHYELRNGARAKAFQVNQK 1044
>POL_CAMVS (P03554) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 679
Score = 129 bits (325), Expect = 8e-29
Identities = 135/524 (25%), Positives = 225/524 (42%), Gaps = 36/524 (6%)
Query: 1350 FPVYEAKDEEGDGIPYEITRLLEQEKKAIQPHQEEIELVNIGTEENKREIKIGATLEEGV 1409
+PV+ AK + E LE KK + Q E VNI T + + ++ A L EG
Sbjct: 140 YPVHIAKLTRAVRVGTE--GFLESMKKRSKTQQPEP--VNISTNKIENPLEEIAILSEG- 194
Query: 1410 KRKIIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIK- 1468
R++ + E++ L+ + E+ + ++ ++ + P A+K+K
Sbjct: 195 -RRLSEEKLFITQQRMQKIEEL--LEKVCSENPLDPNKTKQWMKASIKLSDPSKAIKVKP 251
Query: 1469 --------SEVQKQIDAGFLMTVEYPEWVANIVPV-------PKKDGKVRMCVDFRDLNK 1513
E KQI + V P ++ P K+ GK RM V+++ +NK
Sbjct: 252 MKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNK 311
Query: 1514 ASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKV 1573
A+ D + LP+ D L+ K+FS D SG+ Q+ + E R T+F P G + + V
Sbjct: 312 ATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNV 371
Query: 1574 MPFGLINAGATYQRGMTTLFHDMTHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYK 1633
+PFGL A + +QR M F + K VYVDD++V S +EE H+ ++ + ++ ++
Sbjct: 372 VPFGLKQAPSIFQRHMDEAFR-VFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHG 430
Query: 1634 LRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMP-APRTEKQVRGFLGRLNYI 1692
+ L+ K + LG + + + + I + P +KQ++ FLG L Y
Sbjct: 431 IILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYA 490
Query: 1693 SRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKKYLLEPPILVPPVEGRPLIMYL 1752
S +I + P+ L++N P W E +KK L P L P+ LI+
Sbjct: 491 SDYIPKLAQIRKPLQAKLKENVPWRWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIET 550
Query: 1753 AVFDESMGCVLG--QQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHY 1810
D+ G +L + +E E Y S F E Y +K A+ K+ Y
Sbjct: 551 DASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKETLAVINTIKKFSIY 610
Query: 1811 LVNHTTWLISRMDP------IKYIFEKAAVTGKIARWQMLLSEY 1848
L + R D + ++ + G+ RWQ LS Y
Sbjct: 611 LT--PVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHY 652
>POL_CAMVC (P03555) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 679
Score = 129 bits (325), Expect = 8e-29
Identities = 131/507 (25%), Positives = 218/507 (42%), Gaps = 34/507 (6%)
Query: 1367 ITRLLEQEKKAIQPHQEEIELVNIGTEENKREIKIGATLEEGVKRKIIQLLREYPDIFAW 1426
I LE KK + Q E VNI T + + ++ A L EG R++ +
Sbjct: 155 IEGFLESMKKRSKTQQPEP--VNISTNKIENPLEEIAILSEG--RRLSEEKLFITQQRMQ 210
Query: 1427 SYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIK---------SEVQKQIDA 1477
E++ L+ + E+ + ++ ++ + P A+K+K E KQI
Sbjct: 211 KIEEL--LEKVCSENPLDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKE 268
Query: 1478 GFLMTVEYPEWVANIVPV-------PKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVD 1530
+ V P ++ P K+ GK RM V+++ +NKA+ D + LP+ D L+
Sbjct: 269 LLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYNLPNKDELLT 328
Query: 1531 NTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMT 1590
K+FS D SG+ Q+ + E R T+F P G + + V+PFGL A + +QR M
Sbjct: 329 LIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMD 388
Query: 1591 TLFHDMTHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKL 1650
F + K VYVDD++V S +EE H+ ++ + ++ ++ + L+ K +
Sbjct: 389 EAFR-VFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINF 447
Query: 1651 LGFIVSQKGIEVDPDKVRAIREMP-APRTEKQVRGFLGRLNYISRFISHMTATCGPIFKL 1709
LG + + + + I + P +KQ++ FLG L Y S +I + P+
Sbjct: 448 LGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAK 507
Query: 1710 LRKNQPVVWNDECQEAFDSIKKYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLG--QQD 1767
L++N P W E +KK L P L P+ LI+ D+ G +L + +
Sbjct: 508 LKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKIN 567
Query: 1768 ETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDP--- 1824
E E Y S F E Y +K A+ K+ YL + R D
Sbjct: 568 EGTNTELICRYASGSFKAAERNYHSNDKETLAVINTIKKFSIYLT--PVHFLIRTDNTHF 625
Query: 1825 ---IKYIFEKAAVTGKIARWQMLLSEY 1848
+ ++ + G+ RWQ LS Y
Sbjct: 626 KSFVNLNYKGDSKLGRNIRWQAWLSHY 652
>POL_CAMVN (Q00962) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 680
Score = 125 bits (313), Expect = 2e-27
Identities = 133/524 (25%), Positives = 223/524 (42%), Gaps = 36/524 (6%)
Query: 1350 FPVYEAKDEEGDGIPYEITRLLEQEKKAIQPHQEEIELVNIGTEENKREIKIGATLEEGV 1409
+PV+ AK + E LE KK + Q E VNI T + + ++ A L EG
Sbjct: 141 YPVHIAKLTRAVRVGTE--GFLESMKKRSKTQQPEP--VNISTNKIENPLEEIAILSEG- 195
Query: 1410 KRKIIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIK- 1468
R++ + E++ L+ + E+ + ++ ++ + P A+K+K
Sbjct: 196 -RRLSEEKLFITQQRMQKTEEL--LEKVCSENPLDPNKTKQWMKASIKLSDPSKAIKVKP 252
Query: 1469 --------SEVQKQIDAGFLMTVEYPEWVANIVPV-------PKKDGKVRMCVDFRDLNK 1513
E KQI + V P ++ P G RM V+++ +NK
Sbjct: 253 MKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAENGRGNKRMVVNYKAMNK 312
Query: 1514 ASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKV 1573
A+ D + LP+ D L+ K+FS D SG+ Q+ + E R T+F P G + + V
Sbjct: 313 ATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNV 372
Query: 1574 MPFGLINAGATYQRGMTTLFHDMTHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYK 1633
+PFGL A + +QR M F + K VYVDD++V S +EE H+ ++ + ++ ++
Sbjct: 373 VPFGLKQAPSIFQRHMDEAFR-VFRKFCCVYVDDIVVFSNNEEDHLLHVAMILQKCNQHG 431
Query: 1634 LRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMP-APRTEKQVRGFLGRLNYI 1692
+ L+ K + LG + + + + I + P +KQ++ FLG L Y
Sbjct: 432 IILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQLQRFLGILTYA 491
Query: 1693 SRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKKYLLEPPILVPPVEGRPLIMYL 1752
S +I ++ P+ L++N P W E +KK L P L P+ LI+
Sbjct: 492 SDYIPNLAQMRQPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIET 551
Query: 1753 AVFDESMGCVLG--QQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHY 1810
D+ G +L + +E E Y S F E Y +K A+ K+ Y
Sbjct: 552 DASDDYWGGMLKAIKINEGTNTELICRYRSGSFKAAERNYHSNDKETLAVINTIKKFSIY 611
Query: 1811 LVNHTTWLISRMDP------IKYIFEKAAVTGKIARWQMLLSEY 1848
L + R D + ++ + G+ RWQ LS Y
Sbjct: 612 LT--PVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLSHY 653
>POL_CAMVD (P03556) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 674
Score = 125 bits (313), Expect = 2e-27
Identities = 111/422 (26%), Positives = 184/422 (43%), Gaps = 28/422 (6%)
Query: 1452 VRQKLRRTHPDMALKIK---------SEVQKQIDAGFLMTVEYPEWVANIVPV------- 1495
++ ++ + P A+K+K E KQI + V P ++ P
Sbjct: 229 MKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEA 288
Query: 1496 PKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPE 1555
K+ GK RM V+++ +NKA+ D + P+ D L+ K+FS D SG+ Q+ + E
Sbjct: 289 EKRRGKKRMVVNYKAMNKATVGDAYNPPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQE 348
Query: 1556 DREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMTHKEVEVYVDDMIVKSTDE 1615
R T+F P G + + V+PFGL A + +QR M F + K VYVDD++V S +E
Sbjct: 349 SRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFR-VFRKFCCVYVDDILVFSNNE 407
Query: 1616 EQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMP- 1674
E H+ ++ + ++ ++ + L+ K + LG + + + + I + P
Sbjct: 408 EDHLLHVAMILQKCNQHGIILSKKKAQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPD 467
Query: 1675 APRTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKKYLL 1734
+KQ++ FLG L Y S +I + P+ L++N P W E +KK L
Sbjct: 468 TLEDKKQLQRFLGILTYASDYIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQ 527
Query: 1735 EPPILVPPVEGRPLIMYLAVFDESMGCVLG--QQDETGKKEHAIYYLSKKFTDCETRYTM 1792
P L P+ LI+ D+ G +L + +E E Y S F E Y
Sbjct: 528 GFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHS 587
Query: 1793 LEKTCCALAWAAKRLRHYLVNHTTWLISRMDP------IKYIFEKAAVTGKIARWQMLLS 1846
+K A+ K+ YL + R D + ++ + G+ RWQ LS
Sbjct: 588 NDKETLAVINTIKKFSIYLT--PVHFLIRTDNTHFKSFVNLNYKGDSKLGRNIRWQAWLS 645
Query: 1847 EY 1848
Y
Sbjct: 646 HY 647
>POL_CERV (P05400) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 659
Score = 119 bits (298), Expect = 1e-25
Identities = 102/387 (26%), Positives = 167/387 (42%), Gaps = 13/387 (3%)
Query: 1497 KKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPED 1556
++ GK RM V+++ +NKA+ D LP+ D L+ K++S D SG Q+ + E
Sbjct: 277 RRRGKKRMVVNYKAMNKATKGDAHNLPNKDELLTLVRGKKIYSSFDCKSGLWQVLLDKES 336
Query: 1557 REKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMTHKEVEVYVDDMIV-KSTDE 1615
+ T+F P G + + V+PFGL A + + + + K VYVDD++V +T
Sbjct: 337 QLLTAFTCPQGHYQWNVVPFGLKQAPSIFPKTYANSHSNQYSKYCCVYVDDILVFSNTGR 396
Query: 1616 EQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMP- 1674
++H ++ + R K + L+ K LG + Q + I + P
Sbjct: 397 KEHYIHVLNILRRCEKLGIILSKKKAQLFKEKINFLGLEIDQGTHCPQNHILEHIHKFPD 456
Query: 1675 APRTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKKYLL 1734
+KQ++ FLG L Y S +I + + P+ L+++ WND + IKK L
Sbjct: 457 RIEDKKQLQRFLGILTYASDYIPKLASIRKPLQSKLKEDSTWTWNDTDSQYMAKIKKNLK 516
Query: 1735 EPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLE 1794
P L P L++ +E G +L + E+ Y S F E Y E
Sbjct: 517 SFPKLYHPEPNDKLVIETDASEEFWGGIL--KAIHNSHEYICRYASGSFKAAERNYHSNE 574
Query: 1795 KTCCALAWAAKRLRHYLVNHTTWLISRMDP------IKYIFEKAAVTGKIARWQMLLSEY 1848
K A+ K+ YL + + R D + + G++ RWQM LS+Y
Sbjct: 575 KELLAVIRVIKKFSIYLT--PSRFLIRTDNKNFTHFVNINLKGDRKQGRLVRWQMWLSQY 632
Query: 1849 DIVFKTQKAIKGSILADHLAYQPLDDY 1875
D + K ++ AD L L +Y
Sbjct: 633 DFDVEHIAGTK-NVFADFLQENTLTNY 658
>POL_RTBVP (P27502) Polyprotein (P194 protein) [Contains: Coat
protein; Protease (EC 3.4.23.-); Reverse transcriptase
(EC 2.7.7.49); Ribonuclease H (EC 3.1.26.4)]
Length = 1675
Score = 115 bits (287), Expect = 2e-24
Identities = 83/316 (26%), Positives = 158/316 (49%), Gaps = 8/316 (2%)
Query: 1501 KVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKT 1560
K R+ +++ LN D F +PH +++ ++ +FS D +G++ +K+ + ++ T
Sbjct: 1238 KPRIVYNYKRLNDNMHTDPFNIPHKISMINLIQKANIFSKFDLKAGFHHMKLKDDFKDWT 1297
Query: 1561 SFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMTHKEVEVYVDDMIVKSTDEEQHVE 1620
+F G + + V PFG+ NA +QR M F D+ K +Y+DD+++ S +E++H+E
Sbjct: 1298 TFTCSEGLYTWNVCPFGIANAPCAFQRFMQESFGDL--KFALLYIDDILIASNNEKEHIE 1355
Query: 1621 YLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPR--T 1678
+L F R+++ L+ K ++ + LG + + I + P V I++ + T
Sbjct: 1356 HLKIFFNRVKEVGCVLSKKKSKMFLKEVEYLGVEIKEGKISLQPHIVDKIKKFDKNKLNT 1415
Query: 1679 EKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKKYLLEPPI 1738
K ++ +LG LNY +I ++ GP++K KN ++N E I++ + +
Sbjct: 1416 LKGLQAYLGLLNYARGYIKDLSKLVGPLYKKTGKNGQRIFNKEDWNIIFKIEREVSKIKP 1475
Query: 1739 LVPPVEGRPLIMYLAVFDESMGCVLGQQDE--TGKKEHAIY-YLSKKFTDCETRYTMLEK 1795
L P E +I+ +E G VL + + +GK I Y S F + +T +T L+
Sbjct: 1476 LERPKETDYIIIETDASEEGWGAVLVCKPDKYSGKDTEKIAGYASGNFGEKKT-WTSLDY 1534
Query: 1796 TCCALAWAAKRLRHYL 1811
A+ A + + YL
Sbjct: 1535 EIEAINEALNKFQIYL 1550
>POL_FMVD (P09523) Enzymatic polyprotein [Contains: Aspartic protease
(EC 3.4.23.-); Endonuclease; Reverse transcriptase (EC
2.7.7.49)]
Length = 666
Score = 112 bits (280), Expect = 1e-23
Identities = 102/377 (27%), Positives = 164/377 (43%), Gaps = 10/377 (2%)
Query: 1497 KKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPED 1556
++ GK RM V+++ +N+A+ D+ LP++ L+ +FS D SG+ Q+ + E
Sbjct: 288 RRRGKKRMVVNYKAINQATIGDSHNLPNMQELLTLLRGKSIFSSFDCKSGFWQVVLDEES 347
Query: 1557 REKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMTHKEVEVYVDDMIVKSTDEE 1616
++ T+F P G F +KV+PFGL A + +QR M T + K VYVDD+IV S E
Sbjct: 348 QKLTAFTCPQGHFQWKVVPFGLKQAPSIFQRHMQTALNG-ADKFCMVYVDDIIVFSNSEL 406
Query: 1617 QHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKV-RAIREMP- 1674
H ++ + + + KY + L+ K LG + KG + + I + P
Sbjct: 407 DHYNHVYAVLKIVEKYGIILSKKKANLFKEKINFLGLEI-DKGTHCPQNHILENIHKFPD 465
Query: 1675 APRTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKKYLL 1734
+K ++ FLG L Y +I + P+ L+K+ W + IKK L
Sbjct: 466 RLEDKKHLQRFLGVLTYAETYIPKLAEIRKPLQVKLKKDVTWNWTQSDSDYVKKIKKNLG 525
Query: 1735 EPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLE 1794
P L P LI+ D G VL + G E Y S F E Y +
Sbjct: 526 SFPKLYLPKPEDHLIIETDASDSFWGGVLKARALDG-VELICRYSSGSFKQAEKNYHSND 584
Query: 1795 KTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYI----FEKAAVTGKIARWQMLLSEYDI 1850
K A+ + YL + + Y + + G++ RWQ S+Y
Sbjct: 585 KELLAVKQVITKFSAYLTPVRFTVRTDNKNFTYFLRINLKGDSKQGRLVRWQNWFSKYQF 644
Query: 1851 VFKTQKAIKGSILADHL 1867
+ + +K ++LAD L
Sbjct: 645 DVEHLEGVK-NVLADCL 660
>POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;
Protease (EC 3.4.23.-); Reverse transcriptase (EC
2.7.7.49); Ribonuclease H (EC 3.1.26.4)]
Length = 1886
Score = 109 bits (273), Expect = 8e-23
Identities = 78/271 (28%), Positives = 133/271 (48%), Gaps = 11/271 (4%)
Query: 1497 KKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPED 1556
+K GK RM +++ LN+ + D + LP I+ ++ +SK++S D SG+ Q+ M E
Sbjct: 1458 EKKGKERMVFNYKLLNENTESDQYSLPGINTIISKVGRSKIYSKFDLKSGFWQVAMEEES 1517
Query: 1557 REKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMTHKEVEVYVDDMIVKSTDEE 1616
T+F+ + + VMPFGL NA A +QR M +F T K + VY+DD++V S E
Sbjct: 1518 VPWTAFLAGNKLYEWLVMPFGLKNAPAIFQRKMDNVFKG-TEKFIAVYIDDILVFSETAE 1576
Query: 1617 QHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAP 1676
QH ++L M + ++ L L+P K G LG + I++ P + I +
Sbjct: 1577 QHSQHLYTMLQLCKENGLILSPTKMKIGTPEIDFLGASLGCTKIKLQPHIISKICDFSDE 1636
Query: 1677 R--TEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKKYLL 1734
+ T + +R +LG L+Y +I + P+ + + N E + IK+ +
Sbjct: 1637 KLATPEGMRSWLGILSYARNYIQDIGKLVQPLRQKMAPTGDKRMNPETWKMVRQIKEKVK 1696
Query: 1735 E-PPILVPPVEGRPLIMYLAVFDESMGCVLG 1764
P + +PP + +I E+ GC+ G
Sbjct: 1697 NLPDLQLPPKDSFIII-------ETDGCMTG 1720
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.319 0.136 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 306,090,789
Number of Sequences: 164201
Number of extensions: 13924385
Number of successful extensions: 49858
Number of sequences better than 10.0: 414
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 196
Number of HSP's that attempted gapping in prelim test: 44224
Number of HSP's gapped (non-prelim): 2277
length of query: 2492
length of database: 59,974,054
effective HSP length: 127
effective length of query: 2365
effective length of database: 39,120,527
effective search space: 92520046355
effective search space used: 92520046355
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 74 (33.1 bits)
Medicago: description of AC146557.10