BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146554.7 - phase: 0 /pseudo
(1014 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
YM53_MYCBO (P64956) Hypothetical protein Mb2253c 63 3e-09
YM28_MYCTU (P64955) Hypothetical protein Rv2228c/MT2287 63 3e-09
POL3_DROME (P04323) Retrovirus-related Pol polyprotein from tran... 42 0.006
YPEP_BACSU (P54164) Hypothetical protein ypeP 42 0.008
POL2_DROME (P20825) Retrovirus-related Pol polyprotein from tran... 40 0.024
RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protei... 36 0.60
RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protei... 36 0.60
RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protei... 36 0.60
KHSE_BUCBP (P59568) Homoserine kinase (EC 2.7.1.39) (HK) 33 3.9
RSG1_RAT (P50904) Ras GTPase-activating protein 1 (GTPase-activa... 32 8.6
RSG1_HUMAN (P20936) Ras GTPase-activating protein 1 (GTPase-acti... 32 8.6
RSG1_BOVIN (P09851) Ras GTPase-activating protein 1 (GTPase-acti... 32 8.6
>YM53_MYCBO (P64956) Hypothetical protein Mb2253c
Length = 364
Score = 63.2 bits (152), Expect = 3e-09
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
Query: 760 SGIGAVLITPKGTHIPFTARIQFD-CTNNIVEYEACIMGIEEAIDLRIKKIVIYGDLALV 818
+G GAV+ T + + ++ TNN+ EY I G+++A+ L + + D LV
Sbjct: 18 AGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLV 77
Query: 819 INQIKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADALA 867
+ Q+ G W+ +HP L+ A+ L + F ++ VPR N AD LA
Sbjct: 78 VEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYADRLA 126
>YM28_MYCTU (P64955) Hypothetical protein Rv2228c/MT2287
Length = 364
Score = 63.2 bits (152), Expect = 3e-09
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
Query: 760 SGIGAVLITPKGTHIPFTARIQFD-CTNNIVEYEACIMGIEEAIDLRIKKIVIYGDLALV 818
+G GAV+ T + + ++ TNN+ EY I G+++A+ L + + D LV
Sbjct: 18 AGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLV 77
Query: 819 INQIKGEWETRHPGLIPYRDYARRLLTFFNKVELHHVPRDENQMADALA 867
+ Q+ G W+ +HP L+ A+ L + F ++ VPR N AD LA
Sbjct: 78 VEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYADRLA 126
>POL3_DROME (P04323) Retrovirus-related Pol polyprotein from
transposon 17.6 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1058
Score = 42.4 bits (98), Expect = 0.006
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 632 ENLLRFAWAAKHLRHYMVNHTTWLMSKMDPIKYIFEKPALTGRIARWQMLLSEYDIVYRT 691
+ LL WA K RHY++ + S P+ +++ ++ RW++ LSE+D +
Sbjct: 550 KELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKY 609
Query: 692 QKAIKGSILANHLAHQPIED 711
K K + +A+ L+ +E+
Sbjct: 610 IKG-KENCVADALSRIKLEE 628
>YPEP_BACSU (P54164) Hypothetical protein ypeP
Length = 120
Score = 42.0 bits (97), Expect = 0.008
Identities = 29/86 (33%), Positives = 38/86 (43%), Gaps = 3/86 (3%)
Query: 785 TNNIVEYEACIMGIEEAIDLRIKK--IVIYGDLALVINQIKGEWETRHPGLIPYRDYARR 842
TNN EY A I E +L + I I GD +V+NQ+ G W P + D
Sbjct: 11 TNNEAEYAALYEAIREVRELGASRNSITIKGDSLVVLNQLDGSWPCYDPSHNEWLDKIEA 70
Query: 843 LLTFFNKVELHH-VPRDENQMADALA 867
LL + + R +NQ AD LA
Sbjct: 71 LLESLKLTPTYETIQRKDNQEADGLA 96
>POL2_DROME (P20825) Retrovirus-related Pol polyprotein from
transposon 297 [Contains: Protease (EC 3.4.23.-);
Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Length = 1059
Score = 40.4 bits (93), Expect = 0.024
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 632 ENLLRFAWAAKHLRHYMVNHTTWLMSKMDPIKYIFEKPALTGRIARWQMLLSEYDIVYRT 691
+ LL WA K RHY++ + S P++++ ++ RW++ LSEY
Sbjct: 549 KELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDY 608
Query: 692 QKAIKGSILANHLAHQPIED 711
K + S+ A+ L+ IE+
Sbjct: 609 IKGKENSV-ADALSRIKIEE 627
>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein
type 3
Length = 1333
Score = 35.8 bits (81), Expect = 0.60
Identities = 33/112 (29%), Positives = 52/112 (45%), Gaps = 30/112 (26%)
Query: 632 ENLLRFAWAAKHLRHYMVNHTTWLMSKMDPIKYIFEKPALTGRI-----------ARWQM 680
+ +L + KH RHY L S ++P K + + L GRI ARWQ+
Sbjct: 754 KEMLAIIKSLKHWRHY-------LESTIEPFKILTDHRNLIGRITNESEPENKRLARWQL 806
Query: 681 LLSE--YDIVYRTQKAIKGSILANHLA---HQPIEDYQPIKFDFPDKEIMYL 727
L + ++I YR GS ANH+A + +++ +PI D D I ++
Sbjct: 807 FLQDFNFEINYR-----PGS--ANHIADALSRIVDETEPIPKDSEDNSINFV 851
>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein
type 2
Length = 1333
Score = 35.8 bits (81), Expect = 0.60
Identities = 33/112 (29%), Positives = 52/112 (45%), Gaps = 30/112 (26%)
Query: 632 ENLLRFAWAAKHLRHYMVNHTTWLMSKMDPIKYIFEKPALTGRI-----------ARWQM 680
+ +L + KH RHY L S ++P K + + L GRI ARWQ+
Sbjct: 754 KEMLAIIKSLKHWRHY-------LESTIEPFKILTDHRNLIGRITNESEPENKRLARWQL 806
Query: 681 LLSE--YDIVYRTQKAIKGSILANHLA---HQPIEDYQPIKFDFPDKEIMYL 727
L + ++I YR GS ANH+A + +++ +PI D D I ++
Sbjct: 807 FLQDFNFEINYR-----PGS--ANHIADALSRIVDETEPIPKDSEDNSINFV 851
>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein
type 1
Length = 1333
Score = 35.8 bits (81), Expect = 0.60
Identities = 33/112 (29%), Positives = 52/112 (45%), Gaps = 30/112 (26%)
Query: 632 ENLLRFAWAAKHLRHYMVNHTTWLMSKMDPIKYIFEKPALTGRI-----------ARWQM 680
+ +L + KH RHY L S ++P K + + L GRI ARWQ+
Sbjct: 754 KEMLAIIKSLKHWRHY-------LESTIEPFKILTDHRNLIGRITNESEPENKRLARWQL 806
Query: 681 LLSE--YDIVYRTQKAIKGSILANHLA---HQPIEDYQPIKFDFPDKEIMYL 727
L + ++I YR GS ANH+A + +++ +PI D D I ++
Sbjct: 807 FLQDFNFEINYR-----PGS--ANHIADALSRIVDETEPIPKDSEDNSINFV 851
>KHSE_BUCBP (P59568) Homoserine kinase (EC 2.7.1.39) (HK)
Length = 310
Score = 33.1 bits (74), Expect = 3.9
Identities = 28/118 (23%), Positives = 49/118 (40%), Gaps = 11/118 (9%)
Query: 195 SAKKELVFLTTSLGGMFDPPKGSFHSA-------GFIHDSLETDAITDDAPEGVASSTFI 247
S+ +V ++ F+ P +F G I S+ D + AP + I
Sbjct: 98 SSACSIVATVVAINTFFNKPINNFELLKLMGKLEGKISGSVHYDNV---APSYLGGMQLI 154
Query: 248 MNENRRFCHVIYYLIFIFWCFFWKNGNIKIQKNRSLFLLKFSKSKVCIYSLKSIMNHV 305
+N+N C I W W +I ++ R+L L++SK KVCI +++ +
Sbjct: 155 INKNDIVCQKISIFKNWLWVIAWPGISISTEQARTLLPLQYSK-KVCIQHSQNLAGFI 211
>RSG1_RAT (P50904) Ras GTPase-activating protein 1
(GTPase-activating protein) (GAP) (Ras p21 protein
activator) (p120GAP) (RasGAP)
Length = 1038
Score = 32.0 bits (71), Expect = 8.6
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 877 GHNTVLVINVQFLDRPAYVF--AAEAVDDDKPWYHDIQVFVQTQKYPPGASNKDKKTLRK 934
G I VQ Y+F A E + + W +Q F +K PG SN K LR+
Sbjct: 527 GRPNCFQIVVQHFSEEHYIFYFAGETPEQAEDWMKGLQAFCSLRKSSPGTSN---KRLRQ 583
Query: 935 LSS 937
+SS
Sbjct: 584 VSS 586
>RSG1_HUMAN (P20936) Ras GTPase-activating protein 1
(GTPase-activating protein) (GAP) (Ras p21 protein
activator) (p120GAP) (RasGAP)
Length = 1047
Score = 32.0 bits (71), Expect = 8.6
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 877 GHNTVLVINVQFLDRPAYVF--AAEAVDDDKPWYHDIQVFVQTQKYPPGASNKDKKTLRK 934
G I VQ Y+F A E + + W +Q F +K PG SN K LR+
Sbjct: 536 GRPNCFQIVVQHFSEEHYIFYFAGETPEQAEDWMKGLQAFCNLRKSSPGTSN---KRLRQ 592
Query: 935 LSS 937
+SS
Sbjct: 593 VSS 595
>RSG1_BOVIN (P09851) Ras GTPase-activating protein 1
(GTPase-activating protein) (GAP) (Ras p21 protein
activator) (p120GAP) (RasGAP)
Length = 1044
Score = 32.0 bits (71), Expect = 8.6
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 877 GHNTVLVINVQFLDRPAYVF--AAEAVDDDKPWYHDIQVFVQTQKYPPGASNKDKKTLRK 934
G I VQ Y+F A E + + W +Q F +K PG SN K LR+
Sbjct: 533 GRPNCFQIVVQHFSEEHYIFYFAGETPEQAEDWMKGLQAFCNLRKSSPGTSN---KRLRQ 589
Query: 935 LSS 937
+SS
Sbjct: 590 VSS 592
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.352 0.157 0.561
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,283,709
Number of Sequences: 164201
Number of extensions: 4188350
Number of successful extensions: 13177
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 13173
Number of HSP's gapped (non-prelim): 12
length of query: 1014
length of database: 59,974,054
effective HSP length: 120
effective length of query: 894
effective length of database: 40,269,934
effective search space: 36001320996
effective search space used: 36001320996
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (22.0 bits)
S2: 71 (32.0 bits)
Medicago: description of AC146554.7