BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146554.3 - phase: 0
(247 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
RS4_ARATH (P49204) 40S ribosomal protein S4 454 e-128
RS4_SOLTU (P46300) 40S ribosomal protein S4 451 e-127
RS4_GOSHI (P46299) 40S ribosomal protein S4 450 e-126
RS4_MAIZE (O22424) 40S ribosomal protein S4 449 e-126
RS4_PRUAR (O81363) 40S ribosomal protein S4 434 e-122
RS4_CRIGR (P47961) 40S ribosomal protein S4 352 6e-97
RS4X_RAT (P62703) 40S ribosomal protein S4, X isoform 351 8e-97
RS4X_MOUSE (P62702) 40S ribosomal protein S4, X isoform 351 8e-97
RS4X_MESAU (P62704) 40S ribosomal protein S4, X isoform 351 8e-97
RS4X_MACFU (Q76MY1) 40S ribosomal protein S4, X isoform 351 8e-97
RS4X_HUMAN (P62701) 40S ribosomal protein S4, X isoform (Single ... 351 8e-97
RS4X_FELCA (P62705) 40S ribosomal protein S4, X isoform 351 8e-97
RS4X_CERAE (Q76N24) 40S ribosomal protein S4, X isoform 351 8e-97
RS4_CHICK (P47836) 40S ribosomal protein S4 348 5e-96
RS4_ICTPU (Q90YS0) 40S ribosomal protein S4 346 3e-95
RS4Y_MONDO (O62739) 40S ribosomal protein S4, Y isoform 345 6e-95
RS4X_MONDO (O62738) 40S ribosomal protein S4, X isoform 345 8e-95
RS4Y_MACFU (P79183) 40S ribosomal protein S4, Y isoform 341 1e-93
RS4Z_PANTR (Q6GVM7) 40S ribosomal protein S4, Y isoform 2 335 5e-92
RS4B_SCHPO (Q9USW5) 40S ribosomal protein S4-B 335 5e-92
>RS4_ARATH (P49204) 40S ribosomal protein S4
Length = 262
Score = 454 bits (1169), Expect = e-128
Identities = 218/245 (88%), Positives = 237/245 (95%), Gaps = 1/245 (0%)
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 60
MLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVI+ILMQRH+ VDGKVRT
Sbjct: 19 MLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRT 78
Query: 61 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPY 120
DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++D+EAKFKLCKVRS+QFGQKGIPY
Sbjct: 79 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPY 138
Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLEQNKITDFIKFDVGNVVMVTGGRNRGRVGFIKNR 180
LNTYDGRTIRYPDPLIK NDTIKLDLE+NKI +FIKFDVGNVVMVTGGRNRGRVG IKNR
Sbjct: 139 LNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVGVIKNR 198
Query: 181 KKHMGTFETIHVQDAAGHEFATRLGNVFTIGRGPKPWVSLPKGRGIKLTVIEEARKRMAA 240
+KH G+FETIH+QD+ GHEFATRLGNV+TIG+G KPWVSLPKG+GIKLT+IEEARKR+ A
Sbjct: 199 EKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKRL-A 257
Query: 241 SQQAA 245
SQQAA
Sbjct: 258 SQQAA 262
>RS4_SOLTU (P46300) 40S ribosomal protein S4
Length = 264
Score = 451 bits (1161), Expect = e-127
Identities = 215/246 (87%), Positives = 234/246 (94%)
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 60
MLDKLGGAFAPKPSSGPHKSRECLPL++I+RNRLKYALTYREVI+ILMQR V+VDGKVRT
Sbjct: 19 MLDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTYREVISILMQRQVMVDGKVRT 78
Query: 61 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPY 120
DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS+RD+E+KFKLCKVRSVQFGQKGIPY
Sbjct: 79 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEESKFKLCKVRSVQFGQKGIPY 138
Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLEQNKITDFIKFDVGNVVMVTGGRNRGRVGFIKNR 180
LNTYDGRTIRYPDPLIKANDTIKLDLE NKI DFIKFDVGNVVMVTGGRNRGRVG IKNR
Sbjct: 139 LNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNR 198
Query: 181 KKHMGTFETIHVQDAAGHEFATRLGNVFTIGRGPKPWVSLPKGRGIKLTVIEEARKRMAA 240
+KH G+FET+H+QD+ GHEFATRLGNVFT+G+G KPWVSLPKG+GIKLT+IE+ARKR+AA
Sbjct: 199 EKHKGSFETLHIQDSQGHEFATRLGNVFTLGKGTKPWVSLPKGKGIKLTIIEDARKRLAA 258
Query: 241 SQQAAA 246
A
Sbjct: 259 QSATPA 264
>RS4_GOSHI (P46299) 40S ribosomal protein S4
Length = 262
Score = 450 bits (1158), Expect = e-126
Identities = 220/244 (90%), Positives = 231/244 (94%)
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 60
MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHV+VDGKVRT
Sbjct: 19 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVMVDGKVRT 78
Query: 61 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPY 120
DKTYPAGFMDVVSIPKTNE+FRLLYDTKGRF LH++ DE KFKLCKVRSVQFGQKGIPY
Sbjct: 79 DKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFCLHAITGDETKFKLCKVRSVQFGQKGIPY 138
Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLEQNKITDFIKFDVGNVVMVTGGRNRGRVGFIKNR 180
LNTYDGRTIRYPDPLIKANDTIKLDLE NKI DFIKFDVGNVVMVTGGRNRGRVG IKNR
Sbjct: 139 LNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNRGRVGVIKNR 198
Query: 181 KKHMGTFETIHVQDAAGHEFATRLGNVFTIGRGPKPWVSLPKGRGIKLTVIEEARKRMAA 240
+KH G+FETIHVQDAAGHEFATRLGNVFTIG+G KPWVSLPK +GIKL++IEEARKR+AA
Sbjct: 199 EKHKGSFETIHVQDAAGHEFATRLGNVFTIGKGTKPWVSLPKRKGIKLSIIEEARKRLAA 258
Query: 241 SQQA 244
A
Sbjct: 259 QNAA 262
>RS4_MAIZE (O22424) 40S ribosomal protein S4
Length = 265
Score = 449 bits (1156), Expect = e-126
Identities = 216/247 (87%), Positives = 235/247 (94%)
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 60
MLDKLGGAFAPKPSSGPHKSRECLPLILI+RNRLKYALTYREVI+ILMQRHVLVDGKVRT
Sbjct: 19 MLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRT 78
Query: 61 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPY 120
DKTYPAGFMDV+SIPKTNEN+RLLYDTKGRFRLH +RD++AKFKLCKVRSVQFGQKGIPY
Sbjct: 79 DKTYPAGFMDVISIPKTNENYRLLYDTKGRFRLHPIRDEDAKFKLCKVRSVQFGQKGIPY 138
Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLEQNKITDFIKFDVGNVVMVTGGRNRGRVGFIKNR 180
LNTYDGRTIRYPDPLIKANDTIK+DLE NKI DFIKFDVGNVVMVTGGRN GRVG IKNR
Sbjct: 139 LNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNR 198
Query: 181 KKHMGTFETIHVQDAAGHEFATRLGNVFTIGRGPKPWVSLPKGRGIKLTVIEEARKRMAA 240
+KH G+FETIHV+D+ GH+FATR+GNVFTIG+G KPWVSLPKG+GIKL++IEE RKR AA
Sbjct: 199 EKHKGSFETIHVEDSLGHQFATRMGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQRKRDAA 258
Query: 241 SQQAAAA 247
+Q AA A
Sbjct: 259 AQAAANA 265
>RS4_PRUAR (O81363) 40S ribosomal protein S4
Length = 261
Score = 434 bits (1117), Expect = e-122
Identities = 212/247 (85%), Positives = 229/247 (91%), Gaps = 4/247 (1%)
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 60
MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV++ILMQRH+LVDGK+
Sbjct: 19 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVVSILMQRHILVDGKIH- 77
Query: 61 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPY 120
+ DVVSIPKTNENFRLLYDTKGRFRLHS+RD+E+KFKLCKVRSVQFGQKGIPY
Sbjct: 78 ---FCIRLSDVVSIPKTNENFRLLYDTKGRFRLHSIRDEESKFKLCKVRSVQFGQKGIPY 134
Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLEQNKITDFIKFDVGNVVMVTGGRNRGRVGFIKNR 180
+NTYDGRTIRYPDPLIKANDTIKLDLE NKITDFIKFDVGNVVMVTGGRNRGRVG IKNR
Sbjct: 135 INTYDGRTIRYPDPLIKANDTIKLDLETNKITDFIKFDVGNVVMVTGGRNRGRVGVIKNR 194
Query: 181 KKHMGTFETIHVQDAAGHEFATRLGNVFTIGRGPKPWVSLPKGRGIKLTVIEEARKRMAA 240
+KH G+FETIHVQDA GHEFATRLGNVFTIG+G KPWVSLPKG+GIKLT++EEA+KR AA
Sbjct: 195 EKHKGSFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLTILEEAKKRQAA 254
Query: 241 SQQAAAA 247
+Q AA A
Sbjct: 255 AQTAATA 261
>RS4_CRIGR (P47961) 40S ribosomal protein S4
Length = 262
Score = 352 bits (902), Expect = 6e-97
Identities = 165/244 (67%), Positives = 199/244 (80%)
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 60
MLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVRT
Sbjct: 18 MLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRT 77
Query: 61 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPY 120
D TYPAGFMDV+SI KT ENFRL+YDTKGRF +H + +EAK+KLCKVR + G KGIP+
Sbjct: 78 DITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITSEEAKYKLCKVRKIFVGTKGIPH 137
Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLEQNKITDFIKFDVGNVVMVTGGRNRGRVGFIKNR 180
L T+D RTIRYPDPLIK NDTI++DLE KITDFIKFD GN+ MVTGG N GR+G I NR
Sbjct: 138 LVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNR 197
Query: 181 KKHMGTFETIHVQDAAGHEFATRLGNVFTIGRGPKPWVSLPKGRGIKLTVIEEARKRMAA 240
++H G+F+ +HV+DA G+ FATRL N+F IG+G KPW+SLP+G+GI+LT+ EE KR+AA
Sbjct: 198 ERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAA 257
Query: 241 SQQA 244
Q +
Sbjct: 258 KQSS 261
>RS4X_RAT (P62703) 40S ribosomal protein S4, X isoform
Length = 262
Score = 351 bits (901), Expect = 8e-97
Identities = 165/244 (67%), Positives = 199/244 (80%)
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 60
MLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVRT
Sbjct: 18 MLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRT 77
Query: 61 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPY 120
D TYPAGFMDV+SI KT ENFRL+YDTKGRF +H + +EAK+KLCKVR + G KGIP+
Sbjct: 78 DITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPH 137
Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLEQNKITDFIKFDVGNVVMVTGGRNRGRVGFIKNR 180
L T+D RTIRYPDPLIK NDTI++DLE KITDFIKFD GN+ MVTGG N GR+G I NR
Sbjct: 138 LVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNR 197
Query: 181 KKHMGTFETIHVQDAAGHEFATRLGNVFTIGRGPKPWVSLPKGRGIKLTVIEEARKRMAA 240
++H G+F+ +HV+DA G+ FATRL N+F IG+G KPW+SLP+G+GI+LT+ EE KR+AA
Sbjct: 198 ERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAA 257
Query: 241 SQQA 244
Q +
Sbjct: 258 KQSS 261
>RS4X_MOUSE (P62702) 40S ribosomal protein S4, X isoform
Length = 262
Score = 351 bits (901), Expect = 8e-97
Identities = 165/244 (67%), Positives = 199/244 (80%)
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 60
MLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVRT
Sbjct: 18 MLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRT 77
Query: 61 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPY 120
D TYPAGFMDV+SI KT ENFRL+YDTKGRF +H + +EAK+KLCKVR + G KGIP+
Sbjct: 78 DITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPH 137
Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLEQNKITDFIKFDVGNVVMVTGGRNRGRVGFIKNR 180
L T+D RTIRYPDPLIK NDTI++DLE KITDFIKFD GN+ MVTGG N GR+G I NR
Sbjct: 138 LVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNR 197
Query: 181 KKHMGTFETIHVQDAAGHEFATRLGNVFTIGRGPKPWVSLPKGRGIKLTVIEEARKRMAA 240
++H G+F+ +HV+DA G+ FATRL N+F IG+G KPW+SLP+G+GI+LT+ EE KR+AA
Sbjct: 198 ERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAA 257
Query: 241 SQQA 244
Q +
Sbjct: 258 KQSS 261
>RS4X_MESAU (P62704) 40S ribosomal protein S4, X isoform
Length = 262
Score = 351 bits (901), Expect = 8e-97
Identities = 165/244 (67%), Positives = 199/244 (80%)
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 60
MLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVRT
Sbjct: 18 MLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRT 77
Query: 61 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPY 120
D TYPAGFMDV+SI KT ENFRL+YDTKGRF +H + +EAK+KLCKVR + G KGIP+
Sbjct: 78 DITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPH 137
Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLEQNKITDFIKFDVGNVVMVTGGRNRGRVGFIKNR 180
L T+D RTIRYPDPLIK NDTI++DLE KITDFIKFD GN+ MVTGG N GR+G I NR
Sbjct: 138 LVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNR 197
Query: 181 KKHMGTFETIHVQDAAGHEFATRLGNVFTIGRGPKPWVSLPKGRGIKLTVIEEARKRMAA 240
++H G+F+ +HV+DA G+ FATRL N+F IG+G KPW+SLP+G+GI+LT+ EE KR+AA
Sbjct: 198 ERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAA 257
Query: 241 SQQA 244
Q +
Sbjct: 258 KQSS 261
>RS4X_MACFU (Q76MY1) 40S ribosomal protein S4, X isoform
Length = 262
Score = 351 bits (901), Expect = 8e-97
Identities = 165/244 (67%), Positives = 199/244 (80%)
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 60
MLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVRT
Sbjct: 18 MLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRT 77
Query: 61 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPY 120
D TYPAGFMDV+SI KT ENFRL+YDTKGRF +H + +EAK+KLCKVR + G KGIP+
Sbjct: 78 DITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPH 137
Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLEQNKITDFIKFDVGNVVMVTGGRNRGRVGFIKNR 180
L T+D RTIRYPDPLIK NDTI++DLE KITDFIKFD GN+ MVTGG N GR+G I NR
Sbjct: 138 LVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNR 197
Query: 181 KKHMGTFETIHVQDAAGHEFATRLGNVFTIGRGPKPWVSLPKGRGIKLTVIEEARKRMAA 240
++H G+F+ +HV+DA G+ FATRL N+F IG+G KPW+SLP+G+GI+LT+ EE KR+AA
Sbjct: 198 ERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAA 257
Query: 241 SQQA 244
Q +
Sbjct: 258 KQSS 261
>RS4X_HUMAN (P62701) 40S ribosomal protein S4, X isoform (Single
copy abundant mRNA protein) (SCR10)
Length = 262
Score = 351 bits (901), Expect = 8e-97
Identities = 165/244 (67%), Positives = 199/244 (80%)
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 60
MLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVRT
Sbjct: 18 MLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRT 77
Query: 61 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPY 120
D TYPAGFMDV+SI KT ENFRL+YDTKGRF +H + +EAK+KLCKVR + G KGIP+
Sbjct: 78 DITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPH 137
Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLEQNKITDFIKFDVGNVVMVTGGRNRGRVGFIKNR 180
L T+D RTIRYPDPLIK NDTI++DLE KITDFIKFD GN+ MVTGG N GR+G I NR
Sbjct: 138 LVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNR 197
Query: 181 KKHMGTFETIHVQDAAGHEFATRLGNVFTIGRGPKPWVSLPKGRGIKLTVIEEARKRMAA 240
++H G+F+ +HV+DA G+ FATRL N+F IG+G KPW+SLP+G+GI+LT+ EE KR+AA
Sbjct: 198 ERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAA 257
Query: 241 SQQA 244
Q +
Sbjct: 258 KQSS 261
>RS4X_FELCA (P62705) 40S ribosomal protein S4, X isoform
Length = 262
Score = 351 bits (901), Expect = 8e-97
Identities = 165/244 (67%), Positives = 199/244 (80%)
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 60
MLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVRT
Sbjct: 18 MLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRT 77
Query: 61 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPY 120
D TYPAGFMDV+SI KT ENFRL+YDTKGRF +H + +EAK+KLCKVR + G KGIP+
Sbjct: 78 DITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPH 137
Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLEQNKITDFIKFDVGNVVMVTGGRNRGRVGFIKNR 180
L T+D RTIRYPDPLIK NDTI++DLE KITDFIKFD GN+ MVTGG N GR+G I NR
Sbjct: 138 LVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNR 197
Query: 181 KKHMGTFETIHVQDAAGHEFATRLGNVFTIGRGPKPWVSLPKGRGIKLTVIEEARKRMAA 240
++H G+F+ +HV+DA G+ FATRL N+F IG+G KPW+SLP+G+GI+LT+ EE KR+AA
Sbjct: 198 ERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAA 257
Query: 241 SQQA 244
Q +
Sbjct: 258 KQSS 261
>RS4X_CERAE (Q76N24) 40S ribosomal protein S4, X isoform
Length = 262
Score = 351 bits (901), Expect = 8e-97
Identities = 165/244 (67%), Positives = 199/244 (80%)
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 60
MLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVRT
Sbjct: 18 MLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRT 77
Query: 61 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPY 120
D TYPAGFMDV+SI KT ENFRL+YDTKGRF +H + +EAK+KLCKVR + G KGIP+
Sbjct: 78 DITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPH 137
Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLEQNKITDFIKFDVGNVVMVTGGRNRGRVGFIKNR 180
L T+D RTIRYPDPLIK NDTI++DLE KITDFIKFD GN+ MVTGG N GR+G I NR
Sbjct: 138 LVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNR 197
Query: 181 KKHMGTFETIHVQDAAGHEFATRLGNVFTIGRGPKPWVSLPKGRGIKLTVIEEARKRMAA 240
++H G+F+ +HV+DA G+ FATRL N+F IG+G KPW+SLP+G+GI+LT+ EE KR+AA
Sbjct: 198 ERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAA 257
Query: 241 SQQA 244
Q +
Sbjct: 258 KQSS 261
>RS4_CHICK (P47836) 40S ribosomal protein S4
Length = 262
Score = 348 bits (894), Expect = 5e-96
Identities = 164/244 (67%), Positives = 199/244 (81%)
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 60
MLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVRT
Sbjct: 18 MLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRT 77
Query: 61 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPY 120
D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H + +EAK+KLCKVR + G KGIP+
Sbjct: 78 DITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKIFVGTKGIPH 137
Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLEQNKITDFIKFDVGNVVMVTGGRNRGRVGFIKNR 180
L T+D RTIRYPDPLIK NDTI++DLE KITDFIKFD GN+ MVTGG N GR+G I NR
Sbjct: 138 LVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNR 197
Query: 181 KKHMGTFETIHVQDAAGHEFATRLGNVFTIGRGPKPWVSLPKGRGIKLTVIEEARKRMAA 240
++H G+F+ +HV+DA G+ FATRL N+F IG+G KPW+SLP+G+GI+LT+ EE KR+AA
Sbjct: 198 ERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAA 257
Query: 241 SQQA 244
Q +
Sbjct: 258 KQSS 261
>RS4_ICTPU (Q90YS0) 40S ribosomal protein S4
Length = 262
Score = 346 bits (887), Expect = 3e-95
Identities = 160/245 (65%), Positives = 200/245 (81%)
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 60
MLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + VDGKVRT
Sbjct: 18 MLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKVDGKVRT 77
Query: 61 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPY 120
D TYPAGFMDV+SI KT ENFRL+YD KGRF +H + ++EAK+KLCKV+ + G KGIP+
Sbjct: 78 DITYPAGFMDVISIEKTGENFRLIYDVKGRFTVHRITNEEAKYKLCKVKKILIGTKGIPH 137
Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLEQNKITDFIKFDVGNVVMVTGGRNRGRVGFIKNR 180
L T+D RTIRYPDP+IKANDT+++DLE KIT+FIKFD GN+ MVTGG N GR+G I NR
Sbjct: 138 LVTHDARTIRYPDPMIKANDTVRIDLETGKITEFIKFDTGNLCMVTGGANLGRIGVITNR 197
Query: 181 KKHMGTFETIHVQDAAGHEFATRLGNVFTIGRGPKPWVSLPKGRGIKLTVIEEARKRMAA 240
++H G+F+ +HV+D+ G+ FATRL N+F IG+G K WVS+P+G+GI+LT+ EE KR+AA
Sbjct: 198 ERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNKAWVSIPRGKGIRLTIAEERDKRLAA 257
Query: 241 SQQAA 245
Q ++
Sbjct: 258 KQSSS 262
>RS4Y_MONDO (O62739) 40S ribosomal protein S4, Y isoform
Length = 262
Score = 345 bits (885), Expect = 6e-95
Identities = 162/244 (66%), Positives = 198/244 (80%)
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 60
MLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVRT
Sbjct: 18 MLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRT 77
Query: 61 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPY 120
D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H + +EAK+KLCKVR + KGIP+
Sbjct: 78 DITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKIFVATKGIPH 137
Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLEQNKITDFIKFDVGNVVMVTGGRNRGRVGFIKNR 180
L T+D RTIRYPDPLIK NDT++++LE KITDFIKFD GN+ MVTGG N GR+G I NR
Sbjct: 138 LVTHDARTIRYPDPLIKVNDTVQINLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNR 197
Query: 181 KKHMGTFETIHVQDAAGHEFATRLGNVFTIGRGPKPWVSLPKGRGIKLTVIEEARKRMAA 240
+KH G+F+ +HV+DA G+ FATRL N+F IG+G KPW+SLP+G+GI+LT+ EE KR+AA
Sbjct: 198 EKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAA 257
Query: 241 SQQA 244
Q +
Sbjct: 258 KQSS 261
>RS4X_MONDO (O62738) 40S ribosomal protein S4, X isoform
Length = 262
Score = 345 bits (884), Expect = 8e-95
Identities = 163/242 (67%), Positives = 195/242 (80%)
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 60
MLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVRT
Sbjct: 18 MLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRT 77
Query: 61 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPY 120
D TYP GFMDV+SI KT E+FRL+YDTKGRF +H + +EAK+KLCKVR G K IP+
Sbjct: 78 DTTYPVGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKTFVGTKAIPH 137
Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLEQNKITDFIKFDVGNVVMVTGGRNRGRVGFIKNR 180
L T+D RTIRYPDPLIK NDTI++DLE KITDFIKFD GN+ MVTGG N GR+G I NR
Sbjct: 138 LVTHDARTIRYPDPLIKMNDTIQIDLETGKITDFIKFDTGNMCMVTGGANLGRIGVITNR 197
Query: 181 KKHMGTFETIHVQDAAGHEFATRLGNVFTIGRGPKPWVSLPKGRGIKLTVIEEARKRMAA 240
+KH G+F+ +HV+DA G+ FATRL N+F IG+G KPW+SLP+G+GI+LT+ EE KR+AA
Sbjct: 198 EKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAA 257
Query: 241 SQ 242
Q
Sbjct: 258 KQ 259
>RS4Y_MACFU (P79183) 40S ribosomal protein S4, Y isoform
Length = 262
Score = 341 bits (874), Expect = 1e-93
Identities = 159/244 (65%), Positives = 195/244 (79%)
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 60
MLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVR
Sbjct: 18 MLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRV 77
Query: 61 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPY 120
D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H + +EAK+KLCKVR + G KGIP+
Sbjct: 78 DVTYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKITVGTKGIPH 137
Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLEQNKITDFIKFDVGNVVMVTGGRNRGRVGFIKNR 180
L T+D RTIRYPDP+IK NDT+++DL KIT FIKFD GNV MV GG N GRVG I NR
Sbjct: 138 LVTHDARTIRYPDPVIKVNDTVRIDLGSGKITSFIKFDTGNVCMVIGGANLGRVGVITNR 197
Query: 181 KKHMGTFETIHVQDAAGHEFATRLGNVFTIGRGPKPWVSLPKGRGIKLTVIEEARKRMAA 240
++H G+F+ +HV+DA+G+ FATR+ N+F IG G KPW+SLP+G+GI+LT+ EE KR+AA
Sbjct: 198 ERHPGSFDVVHVKDASGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKRLAA 257
Query: 241 SQQA 244
Q +
Sbjct: 258 KQSS 261
>RS4Z_PANTR (Q6GVM7) 40S ribosomal protein S4, Y isoform 2
Length = 262
Score = 335 bits (860), Expect = 5e-92
Identities = 158/244 (64%), Positives = 193/244 (78%)
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 60
MLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT EV I MQR + +DGKVR
Sbjct: 18 MLDKLTGVFAPRPSTGPHKLRECLPLIVFLRNRLKYALTGDEVKKICMQRFIKIDGKVRV 77
Query: 61 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPY 120
D TYPAGFMDV+SI KT E+FRL+YDTKGRF +H + +EAK+KLCKVR + G KGIP+
Sbjct: 78 DITYPAGFMDVISIEKTGEHFRLVYDTKGRFAVHRITVEEAKYKLCKVRKITVGTKGIPH 137
Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLEQNKITDFIKFDVGNVVMVTGGRNRGRVGFIKNR 180
L T+D RTIRYPDPLIK NDT+++DL KIT FIKFD GNV MV GG N GRVG + NR
Sbjct: 138 LVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNVCMVIGGANLGRVGVVTNR 197
Query: 181 KKHMGTFETIHVQDAAGHEFATRLGNVFTIGRGPKPWVSLPKGRGIKLTVIEEARKRMAA 240
++H G+ + +HV+DA G+ FATR+ N+F IG G KPW+SLP+G+GI+LT+ EE KR+AA
Sbjct: 198 ERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKRLAA 257
Query: 241 SQQA 244
Q +
Sbjct: 258 KQSS 261
>RS4B_SCHPO (Q9USW5) 40S ribosomal protein S4-B
Length = 262
Score = 335 bits (860), Expect = 5e-92
Identities = 161/239 (67%), Positives = 191/239 (79%)
Query: 1 MLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRT 60
+LDKL G +APKPS GPHK+RECLPLI+ LRNRLKYAL REV AILMQR + VDGKVRT
Sbjct: 19 LLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIQVDGKVRT 78
Query: 61 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPY 120
D T+P GFMDV+S+ KT E+FRL+YD KGRF +H + +EAK+KLCKV+ VQ G KG+P+
Sbjct: 79 DSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPF 138
Query: 121 LNTYDGRTIRYPDPLIKANDTIKLDLEQNKITDFIKFDVGNVVMVTGGRNRGRVGFIKNR 180
L T+DGRTIRYPDPLIK NDTIKL+LE NKI FIKFD VMVTGGRN GRVG I +R
Sbjct: 139 LVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHR 198
Query: 181 KKHMGTFETIHVQDAAGHEFATRLGNVFTIGRGPKPWVSLPKGRGIKLTVIEEARKRMA 239
+ H+G+FE IHV+DA EFATRL NVF IG K W+SLPKG+G+KL++ EE +R A
Sbjct: 199 EHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGKSWISLPKGKGVKLSITEERDRRRA 257
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.322 0.140 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,505,039
Number of Sequences: 164201
Number of extensions: 1229818
Number of successful extensions: 2836
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2753
Number of HSP's gapped (non-prelim): 62
length of query: 247
length of database: 59,974,054
effective HSP length: 107
effective length of query: 140
effective length of database: 42,404,547
effective search space: 5936636580
effective search space used: 5936636580
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Medicago: description of AC146554.3