BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146554.10 + phase: 2 /partial
(83 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type... 32 0.38
SUE2_PYRAE (Q8ZSY4) Acid phosphatase surE2 (EC 3.1.3.2) 31 0.64
GBLP_MEDSA (O24076) Guanine nucleotide-binding protein beta subu... 29 1.9
F38A_HUMAN (Q92508) Protein FAM38A 29 1.9
ASG1_YEAST (P38986) L-asparaginase I (EC 3.5.1.1) (L-asparagine ... 28 3.2
GBLP_SOYBN (Q39836) Guanine nucleotide-binding protein beta subu... 28 4.2
PO23_POPJA (Q05118) Retrovirus-related Pol polyprotein from type... 28 5.5
GBLP_CHLRE (P25387) Guanine nucleotide-binding protein beta subu... 28 5.5
GBLP_ARATH (O24456) Guanine nucleotide-binding protein beta subu... 28 5.5
GBLP_NICPL (P93340) Guanine nucleotide-binding protein beta subu... 27 7.1
GBLP_DROME (O18640) Guanine nucleotide-binding protein beta subu... 27 7.1
GBLP_CAEEL (Q21215) Guanine nucleotide-binding protein beta subu... 27 7.1
GBLP_BRANA (Q39336) Guanine nucleotide-binding protein beta subu... 27 7.1
PRP4_ARATH (O22212) Hypothetical Trp-Asp repeats containing prot... 27 9.3
GBLP_TOBAC (P49026) Guanine nucleotide-binding protein beta subu... 27 9.3
GBLP_LEIMA (Q25306) Guanine nucleotide-binding protein beta subu... 27 9.3
GBLP_LEIIN (P62884) Guanine nucleotide-binding protein beta subu... 27 9.3
GBLP_LEICH (P62883) Guanine nucleotide-binding protein beta subu... 27 9.3
>PO21_NASVI (Q03278) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 1025
Score = 31.6 bits (70), Expect = 0.38
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 9 DDNNTDVAVSELIWHRHVPLKVSILAWCLLR----NRLPTKANLVARGTLAPDAQLCVSG 64
D +T A + W R + + + W N LPT + +RG LC +G
Sbjct: 791 DLRDTRKAEASYSWIRDIHVAIPASVWIKYHHTRINALPTLMRM-SRGRRTNGNALCRAG 849
Query: 65 CWAVETAQHLFVSCP 79
C ET H+ CP
Sbjct: 850 CGLPETLYHVVQQCP 864
>SUE2_PYRAE (Q8ZSY4) Acid phosphatase surE2 (EC 3.1.3.2)
Length = 249
Score = 30.8 bits (68), Expect = 0.64
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 25 HVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSG 64
H PL+V L + N P A +A +APDA+L +SG
Sbjct: 49 HKPLRVRRLGGYYVVNGFPADAVFLALKLIAPDAELVISG 88
>GBLP_MEDSA (O24076) Guanine nucleotide-binding protein beta
subunit-like protein
Length = 325
Score = 29.3 bits (64), Expect = 1.9
Identities = 18/43 (41%), Positives = 21/43 (47%), Gaps = 2/43 (4%)
Query: 22 WHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSG 64
W R V KV L C LRN L + V ++PD LC SG
Sbjct: 171 WDRTV--KVWNLTNCKLRNTLAGHSGYVNTVAVSPDGSLCASG 211
>F38A_HUMAN (Q92508) Protein FAM38A
Length = 2035
Score = 29.3 bits (64), Expect = 1.9
Identities = 17/53 (32%), Positives = 26/53 (48%), Gaps = 6/53 (11%)
Query: 22 WHRHVPLKVSILAWCLLRN--RLPTKANLVARGTLAPDAQLCVSGCWAVETAQ 72
W R VP+ +++ W L + R P NL++ L LC S W V +A+
Sbjct: 585 WSRAVPMNSALIKWLYLPDFFRAPNSTNLISDFLLL----LCASQQWQVFSAE 633
>ASG1_YEAST (P38986) L-asparaginase I (EC 3.5.1.1) (L-asparagine
amidohydrolase I) (ASP I)
Length = 381
Score = 28.5 bits (62), Expect = 3.2
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 5/34 (14%)
Query: 47 NLVARGTLAPDA-----QLCVSGCWAVETAQHLF 75
NL+A G L+P+ QLC++G + +E +H+F
Sbjct: 342 NLIASGYLSPEKSRILLQLCLAGNYTLEEIKHVF 375
>GBLP_SOYBN (Q39836) Guanine nucleotide-binding protein beta
subunit-like protein
Length = 325
Score = 28.1 bits (61), Expect = 4.2
Identities = 18/43 (41%), Positives = 20/43 (45%), Gaps = 2/43 (4%)
Query: 22 WHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSG 64
W R V KV L C LRN L V ++PD LC SG
Sbjct: 171 WDRTV--KVWNLTNCKLRNTLAGHNGYVNTVAVSPDGSLCASG 211
>PO23_POPJA (Q05118) Retrovirus-related Pol polyprotein from type I
retrotransposable element R2 [Contains: Reverse
transcriptase (EC 2.7.7.49); Endonuclease] (Fragment)
Length = 606
Score = 27.7 bits (60), Expect = 5.5
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 47 NLVARGT--LAPDAQLCVSGCWAVETAQHLFVSCPI 80
NL +G +AP+ + C +GC E+ H+ CP+
Sbjct: 406 NLATQGLPYMAPEHRGCRNGCPRTESLSHVLQGCPL 441
>GBLP_CHLRE (P25387) Guanine nucleotide-binding protein beta
subunit-like protein
Length = 318
Score = 27.7 bits (60), Expect = 5.5
Identities = 15/37 (40%), Positives = 19/37 (50%)
Query: 28 LKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSG 64
+KV L C L+N L V T++PD LC SG
Sbjct: 176 VKVWNLTNCKLKNNLVGHHGYVNTVTVSPDGSLCASG 212
>GBLP_ARATH (O24456) Guanine nucleotide-binding protein beta
subunit-like protein (WD-40 repeat auxin-dependent
protein ARCA)
Length = 327
Score = 27.7 bits (60), Expect = 5.5
Identities = 17/54 (31%), Positives = 24/54 (43%), Gaps = 2/54 (3%)
Query: 11 NNTDVAVSELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSG 64
N + W + V KV L+ C LR+ L V+ ++PD LC SG
Sbjct: 161 NTLQPTIVSASWDKTV--KVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASG 212
>GBLP_NICPL (P93340) Guanine nucleotide-binding protein beta
subunit-like protein
Length = 326
Score = 27.3 bits (59), Expect = 7.1
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 11 NNTDVAVSELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSG 64
NN + W R V K+ L C LR L V ++PD LC SG
Sbjct: 161 NNLQPTIVSGSWDRTV--KIWNLTNCKLRATLAGHTGYVNTTAVSPDGSLCASG 212
>GBLP_DROME (O18640) Guanine nucleotide-binding protein beta
subunit-like protein (Receptor of activated protein
kinase C homolog)
Length = 318
Score = 27.3 bits (59), Expect = 7.1
Identities = 18/54 (33%), Positives = 26/54 (47%), Gaps = 2/54 (3%)
Query: 11 NNTDVAVSELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSG 64
N+++ + W R V KV LA C L+N + T++PD LC SG
Sbjct: 160 NHSNPIIVSCGWDRTV--KVWNLANCKLKNNHHGHNGYLNTVTVSPDGSLCTSG 211
>GBLP_CAEEL (Q21215) Guanine nucleotide-binding protein beta subunit
2-like 1
Length = 324
Score = 27.3 bits (59), Expect = 7.1
Identities = 20/72 (27%), Positives = 29/72 (39%), Gaps = 9/72 (12%)
Query: 11 NNTDVAVSELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSG------ 64
+N D + W + V KV L C L+ V T++PD LC SG
Sbjct: 164 SNRDPVIVSAGWDKVV--KVWNLGNCRLKTNHIGHTGYVNTVTVSPDGSLCASGGKDGQA 221
Query: 65 -CWAVETAQHLF 75
W + +HL+
Sbjct: 222 MLWDLNEGKHLY 233
>GBLP_BRANA (Q39336) Guanine nucleotide-binding protein beta
subunit-like protein
Length = 327
Score = 27.3 bits (59), Expect = 7.1
Identities = 14/37 (37%), Positives = 20/37 (53%)
Query: 28 LKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSG 64
+KV L+ C LR+ L V+ ++PD LC SG
Sbjct: 176 VKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASG 212
>PRP4_ARATH (O22212) Hypothetical Trp-Asp repeats containing protein
At2g41500
Length = 554
Score = 26.9 bits (58), Expect = 9.3
Identities = 10/28 (35%), Positives = 16/28 (56%)
Query: 56 PDAQLCVSGCWAVETAQHLFVSCPIFGD 83
PD + WA++ A+H+ + C FGD
Sbjct: 227 PDEDMDAETKWALKHAKHMALDCSNFGD 254
>GBLP_TOBAC (P49026) Guanine nucleotide-binding protein beta
subunit-like protein
Length = 326
Score = 26.9 bits (58), Expect = 9.3
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 11 NNTDVAVSELIWHRHVPLKVSILAWCLLRNRLPTKANLVARGTLAPDAQLCVSG 64
NN + W R V K+ L C LR L V ++PD LC SG
Sbjct: 161 NNLQPTIVSGSWDRTV--KIWNLTNCKLRLTLAGHTGYVNTPAVSPDGSLCASG 212
>GBLP_LEIMA (Q25306) Guanine nucleotide-binding protein beta
subunit-like protein (Antigen LACK)
Length = 312
Score = 26.9 bits (58), Expect = 9.3
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
Query: 46 ANLVARGTLAPDAQLCVSG-------CWAVETAQHLF 75
+N V+ T++PD LC SG W + T + LF
Sbjct: 194 SNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLF 230
>GBLP_LEIIN (P62884) Guanine nucleotide-binding protein beta
subunit-like protein (Antigen LACK) (LiP36) (p36Li)
Length = 312
Score = 26.9 bits (58), Expect = 9.3
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
Query: 46 ANLVARGTLAPDAQLCVSG-------CWAVETAQHLF 75
+N V+ T++PD LC SG W + T + LF
Sbjct: 194 SNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLF 230
>GBLP_LEICH (P62883) Guanine nucleotide-binding protein beta
subunit-like protein (Antigen LACK)
Length = 312
Score = 26.9 bits (58), Expect = 9.3
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
Query: 46 ANLVARGTLAPDAQLCVSG-------CWAVETAQHLF 75
+N V+ T++PD LC SG W + T + LF
Sbjct: 194 SNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLF 230
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.324 0.137 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,521,689
Number of Sequences: 164201
Number of extensions: 291247
Number of successful extensions: 780
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 768
Number of HSP's gapped (non-prelim): 23
length of query: 83
length of database: 59,974,054
effective HSP length: 59
effective length of query: 24
effective length of database: 50,286,195
effective search space: 1206868680
effective search space used: 1206868680
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)
Medicago: description of AC146554.10