BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146553.13 + phase: 0
(198 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UPP1_BACAN (Q81VC9) Undecaprenyl-diphosphatase 1 (EC 3.6.1.27) (... 31 2.1
POLG_TBEVS (P07720) Genome polyprotein [Contains: Capsid protein... 31 2.1
LNT1_LEPIN (Q8F724) Apolipoprotein N-acyltransferase 1 (EC 2.3.1... 31 2.1
UPP1_BACHK (Q6HPB7) Undecaprenyl-diphosphatase 1 (EC 3.6.1.27) (... 30 2.8
GHR_SAIBB (Q95ML5) Growth hormone receptor precursor (GH recepto... 30 2.8
GHR_PAPAN (Q9XSZ1) Growth hormone receptor precursor (GH recepto... 30 3.6
GHR_MACMU (P79194) Growth hormone receptor precursor (GH recepto... 30 3.6
GHR_HUMAN (P10912) Growth hormone receptor precursor (GH recepto... 30 3.6
GHR_SHEEP (Q28575) Growth hormone receptor precursor (GH recepto... 30 4.7
DHC7_HUMAN (Q9UBM7) 7-dehydrocholesterol reductase (EC 1.3.1.21)... 30 4.7
CARP_PODAN (O13340) Podosporapepsin precursor (EC 3.4.23.-) 30 4.7
VP4A_VACCV (P16715) Major core protein P4a precursor (Virion cor... 29 8.1
POLG_TBEVH (Q01299) Genome polyprotein [Contains: Capsid protein... 29 8.1
DUN1_YEAST (P39009) DNA damage response protein kinase DUN1 (EC ... 29 8.1
DPOZ_MOUSE (Q61493) DNA polymerase zeta catalytic subunit (EC 2.... 29 8.1
>UPP1_BACAN (Q81VC9) Undecaprenyl-diphosphatase 1 (EC 3.6.1.27)
(Undecaprenyl pyrophosphate phosphatase 1) (Bacitracin
resistance protein 1)
Length = 265
Score = 30.8 bits (68), Expect = 2.1
Identities = 20/53 (37%), Positives = 26/53 (48%), Gaps = 10/53 (18%)
Query: 123 HAFLSVIVFAVLGLLDTNVVHCFYPKFESSEKILMQVLPPVIGVVSGAVFMIF 175
H FL V V GLL +V+ + L Q VIG+V+GA+ MIF
Sbjct: 85 HVFLGVFPAVVAGLLLHDVIKTY----------LFQPYTVVIGLVAGAILMIF 127
>POLG_TBEVS (P07720) Genome polyprotein [Contains: Capsid protein C
(Core protein); Matrix protein (Envelope protein M);
Major envelope protein E; Nonstructural proteins NS1,
NS2A, NS4A and NS4B; Flavivirin (EC 3.4.21.91) (NS2B/NS3
proteinase); RNA-direct
Length = 3412
Score = 30.8 bits (68), Expect = 2.1
Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 78 SFTDSYTGSDGQ----RHYGIVTMNGLWP----SPGSDSVDLSAYKLRFGDFVHAFLSVI 129
SF D +G G RH + M+ + PGS A K+ D AFL+V+
Sbjct: 2111 SFGDVLSGMSGVPELLRHRCVSAMDVFYTLMHEEPGS-----RAMKMAERDAPEAFLTVV 2165
Query: 130 VFAVLGLLDTNVVHCFYPKFESSEKIL 156
VLGL VV CF + S +L
Sbjct: 2166 EMMVLGLATLGVVWCFVVRTSISRMML 2192
>LNT1_LEPIN (Q8F724) Apolipoprotein N-acyltransferase 1 (EC 2.3.1.-)
(ALP N-acyltransferase 1)
Length = 576
Score = 30.8 bits (68), Expect = 2.1
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 122 VHAFLSVIVFAVLGLLDTNVVHCFY-----PKFESSEKILMQVLPPVIGVVSGAV-FMIF 175
V+ F+S++ F + GL+ FY K +S+ K + ++ P G +S + F IF
Sbjct: 89 VNTFVSILFFFLYGLISHLKFFLFYTLFRFSKIDSASKTYILLIFPAAGTLSDMITFQIF 148
Query: 176 PSY 178
P Y
Sbjct: 149 PWY 151
>UPP1_BACHK (Q6HPB7) Undecaprenyl-diphosphatase 1 (EC 3.6.1.27)
(Undecaprenyl pyrophosphate phosphatase 1) (Bacitracin
resistance protein 1)
Length = 265
Score = 30.4 bits (67), Expect = 2.8
Identities = 19/53 (35%), Positives = 26/53 (48%), Gaps = 10/53 (18%)
Query: 123 HAFLSVIVFAVLGLLDTNVVHCFYPKFESSEKILMQVLPPVIGVVSGAVFMIF 175
H FL V V GLL +++ + L Q VIG+V+GA+ MIF
Sbjct: 85 HVFLGVFPAVVAGLLLHDIIKTY----------LFQPYTVVIGLVAGAILMIF 127
>GHR_SAIBB (Q95ML5) Growth hormone receptor precursor (GH receptor)
(Somatotropin receptor) [Contains: Growth hormone
binding protein (GH binding protein) (GHBP) (Serum
binding protein)]
Length = 632
Score = 30.4 bits (67), Expect = 2.8
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 120 DFVHAFLSVIVFAVLGLLDTNVVHCFYPKFESSEKILMQVLPPV 163
DF + +L +I+F + GL V F F ++I M +LPPV
Sbjct: 262 DFYYPWLLIIIFGISGL----TVMLFVFLFSKQQRIKMLILPPV 301
>GHR_PAPAN (Q9XSZ1) Growth hormone receptor precursor (GH receptor)
(Somatotropin receptor) [Contains: Growth hormone
binding protein (GH binding protein) (GHBP) (Serum
binding protein)]
Length = 638
Score = 30.0 bits (66), Expect = 3.6
Identities = 16/44 (36%), Positives = 23/44 (51%), Gaps = 4/44 (9%)
Query: 120 DFVHAFLSVIVFAVLGLLDTNVVHCFYPKFESSEKILMQVLPPV 163
DF +L +I+F + GL V F F ++I M +LPPV
Sbjct: 262 DFYFPWLLIIIFGIFGL----TVMLFVFLFSKQQRIKMLILPPV 301
>GHR_MACMU (P79194) Growth hormone receptor precursor (GH receptor)
(Somatotropin receptor) [Contains: Growth hormone
binding protein (GH binding protein) (GHBP) (Serum
binding protein)]
Length = 638
Score = 30.0 bits (66), Expect = 3.6
Identities = 16/44 (36%), Positives = 23/44 (51%), Gaps = 4/44 (9%)
Query: 120 DFVHAFLSVIVFAVLGLLDTNVVHCFYPKFESSEKILMQVLPPV 163
DF +L +I+F + GL V F F ++I M +LPPV
Sbjct: 262 DFYFPWLLIIIFGIFGL----TVMLFVFLFSKQQRIKMLILPPV 301
>GHR_HUMAN (P10912) Growth hormone receptor precursor (GH receptor)
(Somatotropin receptor) [Contains: Growth hormone
binding protein (GH binding protein) (GHBP) (Serum
binding protein)]
Length = 638
Score = 30.0 bits (66), Expect = 3.6
Identities = 16/44 (36%), Positives = 23/44 (51%), Gaps = 4/44 (9%)
Query: 120 DFVHAFLSVIVFAVLGLLDTNVVHCFYPKFESSEKILMQVLPPV 163
DF +L +I+F + GL V F F ++I M +LPPV
Sbjct: 262 DFYFPWLLIIIFGIFGL----TVMLFVFLFSKQQRIKMLILPPV 301
>GHR_SHEEP (Q28575) Growth hormone receptor precursor (GH receptor)
(Somatotropin receptor) [Contains: Growth hormone
binding protein (GH binding protein) (GHBP) (Serum
binding protein)]
Length = 634
Score = 29.6 bits (65), Expect = 4.7
Identities = 16/44 (36%), Positives = 23/44 (51%), Gaps = 4/44 (9%)
Query: 120 DFVHAFLSVIVFAVLGLLDTNVVHCFYPKFESSEKILMQVLPPV 163
DF + +I+F +LGL V F F ++I M +LPPV
Sbjct: 258 DFQFPWFLIIIFGILGL----TVTLFLLIFSKQQRIKMLILPPV 297
>DHC7_HUMAN (Q9UBM7) 7-dehydrocholesterol reductase (EC 1.3.1.21)
(7-DHC reductase) (Sterol delta-7-reductase) (Putative
sterol reductase SR-2)
Length = 475
Score = 29.6 bits (65), Expect = 4.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 82 SYTGSDGQRHYGIVTMNGLW 101
SYT +DGQRH+ + ++G W
Sbjct: 381 SYTSADGQRHHSKLLVSGFW 400
>CARP_PODAN (O13340) Podosporapepsin precursor (EC 3.4.23.-)
Length = 425
Score = 29.6 bits (65), Expect = 4.7
Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 14/118 (11%)
Query: 87 DGQRHYGIVTMNGLWPSPGSDSVDLSAYKLRFGDFVHAFLSVI--VFAVLGLLDTNVVHC 144
D +++ G +T + SPG + LS Y + G F + +S I L L T +V
Sbjct: 266 DSKKYAGNITYTAVQQSPGYWTHSLSGYSVGSGAFQASQISGISDTGTTLLYLPTAIVTA 325
Query: 145 FYPKFESSEKI---------LMQVLPPVIGVVSGAVFMIFPSYRHGIGYPTSSDTNDT 193
+Y + + ++ LP + GA F I SY I Y S T+ T
Sbjct: 326 YYRQVQGAQNSQYYGGYVFPCSSTLPTFTFGIEGARFTIPASY---INYTRISPTSTT 380
>VP4A_VACCV (P16715) Major core protein P4a precursor (Virion core
protein P4a) [Contains: Core protein P4a; 9 kDa peptide
(9K); 23 kDa protein (23K)]
Length = 891
Score = 28.9 bits (63), Expect = 8.1
Identities = 16/37 (43%), Positives = 20/37 (53%), Gaps = 2/37 (5%)
Query: 79 FTDSYTGSDGQRHYGIVTMNGLWPSPGSDSVDLSAYK 115
F D+Y +D RHYG V +N L P P D + YK
Sbjct: 222 FDDAYNIADAARHYG-VNLNTL-PLPNVDLTTMPTYK 256
>POLG_TBEVH (Q01299) Genome polyprotein [Contains: Capsid protein C
(Core protein); Matrix protein (Envelope protein M);
Major envelope protein E; Nonstructural proteins NS1,
NS2A, NS4A and NS4B; Flavivirin (EC 3.4.21.91) (NS2B/NS3
proteinase); RNA-direct
Length = 3414
Score = 28.9 bits (63), Expect = 8.1
Identities = 23/83 (27%), Positives = 36/83 (42%), Gaps = 5/83 (6%)
Query: 78 SFTDSYTGSDGQ----RHYGIVTMNGLWPSPGSDSVDLSAYKLRFGDFVHAFLSVIVFAV 133
SF D TG G RH + ++ + + D A ++ D AFL+++ V
Sbjct: 2111 SFGDVLTGMSGVPELLRHRCVSALDVFYTLM-HEKPDSRAMRMAERDAPEAFLTMVEMMV 2169
Query: 134 LGLLDTNVVHCFYPKFESSEKIL 156
LGL V+ CF + S +L
Sbjct: 2170 LGLATLGVIWCFVVRTSISRMML 2192
>DUN1_YEAST (P39009) DNA damage response protein kinase DUN1 (EC
2.7.1.37)
Length = 513
Score = 28.9 bits (63), Expect = 8.1
Identities = 13/39 (33%), Positives = 25/39 (63%), Gaps = 3/39 (7%)
Query: 44 YLSP-VVTNNGHCSTINKYLSGILLVICGFNCAFTSFTD 81
Y++P V+T G+ S ++ + +G++L +C C F F+D
Sbjct: 387 YVAPEVLTKKGYTSKVDLWSAGVILYVC--LCGFPPFSD 423
>DPOZ_MOUSE (Q61493) DNA polymerase zeta catalytic subunit (EC
2.7.7.7) (Seizure-related protein 4)
Length = 3122
Score = 28.9 bits (63), Expect = 8.1
Identities = 14/63 (22%), Positives = 32/63 (50%)
Query: 49 VTNNGHCSTINKYLSGILLVICGFNCAFTSFTDSYTGSDGQRHYGIVTMNGLWPSPGSDS 108
+ + C +N+++S +L FN A + + S+G +++G++PS +++
Sbjct: 683 IEKDASCIHVNRHISETILGKNSFNFADLNHSKRKLSSEGNEKGNSTSLSGVFPSSLTEN 742
Query: 109 VDL 111
DL
Sbjct: 743 CDL 745
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.320 0.136 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,703,472
Number of Sequences: 164201
Number of extensions: 996731
Number of successful extensions: 2198
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2195
Number of HSP's gapped (non-prelim): 15
length of query: 198
length of database: 59,974,054
effective HSP length: 105
effective length of query: 93
effective length of database: 42,732,949
effective search space: 3974164257
effective search space used: 3974164257
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Medicago: description of AC146553.13