BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146551.11 + phase: 0
(339 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y280_ARATH (O82368) Hypothetical protein At2g29880 189 9e-48
RPB1_YEAST (P04050) DNA-directed RNA polymerase II largest subun... 41 0.004
ZAP3_MOUSE (Q9R0I7) Nuclear protein ZAP3 39 0.019
ZAP3_HUMAN (P49750) Nuclear protein ZAP3 (ZAP113) 39 0.019
MI13_MOUSE (Q8BGT6) Molecule interacting with Rab13 (MIRab13) (M... 36 0.12
SID4_SCHPO (O60187) Septation initiation protein sid4 36 0.16
IRK1_CAEEL (P52192) Inward rectifier potassium channel irk-1 36 0.16
GRK_DROME (P42287) Protein gurken precursor 35 0.21
RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subun... 35 0.27
N551_SOYBN (Q05544) Early nodulin 55-1 (N-55-1) (Fragment) 35 0.27
EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein) 35 0.27
RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subun... 35 0.35
RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subun... 35 0.35
RPB1_DICDI (P35084) DNA-directed RNA polymerase II largest subun... 35 0.35
RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subun... 35 0.35
RPB1_ASHGO (Q75A34) DNA-directed RNA polymerase II largest subun... 35 0.35
PPRB_HUMAN (Q15648) Peroxisome proliferator-activated receptor b... 35 0.35
3BP2_HUMAN (P78314) SH3 domain-binding protein 2 (3BP-2) 35 0.35
RPB1_ENCCU (Q8SSC4) DNA-directed RNA polymerase II largest subun... 34 0.46
EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline... 34 0.46
>Y280_ARATH (O82368) Hypothetical protein At2g29880
Length = 308
Score = 189 bits (480), Expect = 9e-48
Identities = 114/341 (33%), Positives = 181/341 (52%), Gaps = 44/341 (12%)
Query: 1 MGDSQQENNRGKGKDKDGYVAWTMEETSELLYLLVDAINRGLRDANGSFSKQNVERAILP 60
M Q K K K Y++W+ +E EL +LVDAI RG RD NG+ SK VER ILP
Sbjct: 1 MESGDQAGETSKKKKKGPYMSWSDQECYELTAILVDAIKRGWRDKNGTISKTTVERKILP 60
Query: 61 QLNAKTESHKTYNHYLSRMKWFRNQYNKMSTFMRNNSGFGWDSVAKTYTATEEVWNNYLK 120
LN K + +KTY +YLSRMK + +Y+ + +SGFGWD + K +TA ++VW YL
Sbjct: 61 LLNKKFKCNKTYTNYLSRMKSMKKEYSVYAALFWFSSGFGWDPITKQFTAPDDVWAAYLM 120
Query: 121 SHPSHKNLQGKSMIDYDYLKIVVGGGVSSGNNSIALDPEDTDATTFEQESESFGMEDFSY 180
HP+H +++ + D++ L+++ ++ GNN+ L D++A TFE+E + ++ ++
Sbjct: 121 GHPNHHHMRTSTFEDFEDLQLIFESAIAKGNNAFGLG-GDSNAETFEEEDDLQAGDNVNH 179
Query: 181 DPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNSEAPIEKRNRHKRNRSEYE 240
+D + N+ P PT R R K NR+ +
Sbjct: 180 MEINDDEV--------------NETLPKEKLPT---------------RKRSKTNRNG-D 209
Query: 241 RSSGVVGINNQGPAMENLSS---SIGTIVVHF-----EKMSNMMEKREKDRELKNNIWDI 292
RS + N G + E + S +GT +++ E+ +E RE +++ KNN+WD
Sbjct: 210 RSDSI----NHGESSEKVLSEMIGVGTNIINLIQQREERHQREVEFRETEKK-KNNVWDA 264
Query: 293 IKDIPNLDDKTRFKIAELMKSKANKDLFLKMSPEDRLSWIK 333
IK+IP+L+D R+ + + KD+F+ MS E+RL WI+
Sbjct: 265 IKEIPDLEDHIRYDAVTKIHTLNLKDVFVSMSVEERLGWIR 305
>RPB1_YEAST (P04050) DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) (RNA polymerase II subunit 1) (B220)
Length = 1733
Score = 41.2 bits (95), Expect = 0.004
Identities = 25/76 (32%), Positives = 37/76 (47%), Gaps = 3/76 (3%)
Query: 166 FEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNSEAP 225
+ S S+ SY P S ++ +P + P+Y P SPN SP+ SP +S S A
Sbjct: 1661 YSPTSPSYSPTSPSYSPTSPSY-SPTS--PSYSPTSPNYSPTSPSYSPTSPGYSPGSPAY 1717
Query: 226 IEKRNRHKRNRSEYER 241
K++ K N +E R
Sbjct: 1718 SPKQDEQKHNENENSR 1733
Score = 33.9 bits (76), Expect = 0.60
Identities = 24/79 (30%), Positives = 35/79 (43%), Gaps = 3/79 (3%)
Query: 144 GGGVSSGNNSIALDPEDTDATTFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPN 203
G GVSS S + + S S+ SY P S ++ +P + P+Y P SP+
Sbjct: 1534 GFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSY-SPTS--PSYSPTSPS 1590
Query: 204 QPTPSPNQPTPSPHFSLNS 222
SP+ SP +S S
Sbjct: 1591 YSPTSPSYSPTSPSYSPTS 1609
Score = 33.1 bits (74), Expect = 1.0
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 170 SESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNS 222
S FG+ + P S T+ +P + PAY P SP+ SP+ SP +S S
Sbjct: 1532 SPGFGVSSPGFSPTSPTY-SPTS--PAYSPTSPSYSPTSPSYSPTSPSYSPTS 1581
Score = 32.0 bits (71), Expect = 2.3
Identities = 19/58 (32%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNS 222
++ S S+ SY P S ++ +P + PAY P SP+ SP+ SP +S S
Sbjct: 1632 SYSPTSPSYSPTSPSYSPTSPSY-SPTS--PAYSPTSPSYSPTSPSYSPTSPSYSPTS 1686
Score = 32.0 bits (71), Expect = 2.3
Identities = 19/60 (31%), Positives = 30/60 (49%), Gaps = 3/60 (5%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNSEA 224
++ S S+ SY P S ++ +P + P+Y P SP+ SP+ SP +S S A
Sbjct: 1604 SYSPTSPSYSPTSPSYSPTSPSY-SPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1660
Score = 30.8 bits (68), Expect = 5.1
Identities = 18/58 (31%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNS 222
++ S S+ SY P S ++ +P + P+Y P SP+ SP+ SP +S S
Sbjct: 1576 SYSPTSPSYSPTSPSYSPTSPSY-SPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTS 1630
Score = 30.8 bits (68), Expect = 5.1
Identities = 18/58 (31%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNS 222
++ S S+ SY P S ++ +P + P+Y P SP+ SP+ SP +S S
Sbjct: 1569 SYSPTSPSYSPTSPSYSPTSPSY-SPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTS 1623
>ZAP3_MOUSE (Q9R0I7) Nuclear protein ZAP3
Length = 1386
Score = 38.9 bits (89), Expect = 0.019
Identities = 20/49 (40%), Positives = 26/49 (52%)
Query: 167 EQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPS 215
E ES + SY P S +++ P P+Y PPS QP P QP+PS
Sbjct: 145 ESPPESPPVPPGSYMPPSQSYMPPPQPPPSYYPPSSAQPYLPPAQPSPS 193
>ZAP3_HUMAN (P49750) Nuclear protein ZAP3 (ZAP113)
Length = 1822
Score = 38.9 bits (89), Expect = 0.019
Identities = 19/49 (38%), Positives = 27/49 (54%)
Query: 167 EQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPS 215
E ES + SY P S +++ P P+Y PP+ +QP P QP+PS
Sbjct: 144 ESPPESPPVPPGSYMPPSQSYMPPPQPPPSYYPPTSSQPYLPPAQPSPS 192
>MI13_MOUSE (Q8BGT6) Molecule interacting with Rab13 (MIRab13)
(MICAL-like protein 1)
Length = 870
Score = 36.2 bits (82), Expect = 0.12
Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 18/107 (16%)
Query: 115 WNNYLKSHPSHKNL-----QGKSMIDYDYLKIVVGGGVSSGNNSIALDPEDTDATTFEQE 169
W +++ P K G + Y ++ GG S +PE FE+E
Sbjct: 367 WITLVQTEPKKKPAPQPPSSGPGPLSQAYRQVEDGGLEEQTQKSSGTEPEPKPYNPFEEE 426
Query: 170 SESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSP 216
E G +P AP P+ PP P+ P+P+P P+P+P
Sbjct: 427 EEEEG------EP------APPVPSPSLAPPVPS-PSPAPPVPSPAP 460
>SID4_SCHPO (O60187) Septation initiation protein sid4
Length = 660
Score = 35.8 bits (81), Expect = 0.16
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 19/100 (19%)
Query: 151 NNSIALDPEDTDATTFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQ--------PPSP 202
+NS + P + ++++Q + ++ S PN + P+ + + PPS
Sbjct: 156 SNSPSFPPSQSHTSSYDQSPKGQLRDNISV-PNQQDGLDPEVFNQQSKETKKSLQVPPSR 214
Query: 203 NQPTP--SPNQPTPSPHFSLNSEAP--------IEKRNRH 232
N P P PNQ P P+FSL+S P ++ RN H
Sbjct: 215 NVPPPVTRPNQYNPEPNFSLSSGYPQQHFSQPELQNRNVH 254
>IRK1_CAEEL (P52192) Inward rectifier potassium channel irk-1
Length = 505
Score = 35.8 bits (81), Expect = 0.16
Identities = 36/154 (23%), Positives = 59/154 (37%), Gaps = 29/154 (18%)
Query: 100 GWDSVAKT-YTATEEVWNNYLKSHPSHKNLQGKSMIDYDYLKIVVGGGVSSGNNSIALDP 158
G + AKT Y +E +W + + +++ G IDYD + P
Sbjct: 338 GMTAQAKTSYLPSEVLWGHRFRKLVTYQRSNGSYQIDYDLFH--------------STYP 383
Query: 159 EDTDATTFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQP--PSPNQPTPSPN----QP 212
T A + E +S PN + D++E + S + P PSP+
Sbjct: 384 VRTPAMS--------PAEFYSSKPNLKDYYCHDSHEHKLEDNRSSDSTPLPSPSPYSYPS 435
Query: 213 TPSPHFSLNSEAPIEKRNRHKRNRSEYERSSGVV 246
TP HF +S +P+ N K N +G++
Sbjct: 436 TPLNHFQSSSNSPVFSNNHSKFNTEAVTCEAGML 469
>GRK_DROME (P42287) Protein gurken precursor
Length = 295
Score = 35.4 bits (80), Expect = 0.21
Identities = 19/74 (25%), Positives = 32/74 (42%)
Query: 144 GGGVSSGNNSIALDPEDTDATTFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPN 203
GG + + ++SIA DPE E + +S+T P+ +PP
Sbjct: 99 GGQLPNADDSIAADPEQDGIILGSSTDTWLASESSTPITDSETVTTPETVTHTGEPPPDP 158
Query: 204 QPTPSPNQPTPSPH 217
+ +P+ TPSP+
Sbjct: 159 SSSSTPDSTTPSPN 172
>RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6)
Length = 1852
Score = 35.0 bits (79), Expect = 0.27
Identities = 16/52 (30%), Positives = 26/52 (49%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSP 216
T+ S ++ +Y P S ++ + Y P+ SP+ PT SP P+ SP
Sbjct: 1688 TYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPSYSP 1739
Score = 33.5 bits (75), Expect = 0.78
Identities = 18/53 (33%), Positives = 27/53 (49%), Gaps = 1/53 (1%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFI-APDNYEPAYQPPSPNQPTPSPNQPTPSP 216
++ S S+ SY P+S ++ + +Y P+ SP PT SP PT SP
Sbjct: 1639 SYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYSP 1691
Score = 33.5 bits (75), Expect = 0.78
Identities = 18/53 (33%), Positives = 25/53 (46%), Gaps = 1/53 (1%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFI-APDNYEPAYQPPSPNQPTPSPNQPTPSP 216
++ S S+ SY P+S ++ + Y P SP PT SP PT SP
Sbjct: 1646 SYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSP 1698
Score = 32.3 bits (72), Expect = 1.7
Identities = 21/79 (26%), Positives = 36/79 (44%), Gaps = 3/79 (3%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNSEA 224
++ S S+ SY P S ++ +P + P+Y P SP+ SP+ SP +S +S +
Sbjct: 1611 SYSPTSPSYSPTSPSYSPTSPSY-SPTS--PSYSPTSPSYSPTSPSYSPSSPSYSPSSPS 1667
Query: 225 PIEKRNRHKRNRSEYERSS 243
R+ Y +S
Sbjct: 1668 YSPSSPRYSPTSPTYSPTS 1686
Score = 31.6 bits (70), Expect = 3.0
Identities = 20/56 (35%), Positives = 27/56 (47%), Gaps = 7/56 (12%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPP----SPNQPTPSPNQPTPSP 216
++ S S+ SY P+S + +P + P Y P SP PT SP PT SP
Sbjct: 1653 SYSPSSPSYSPSSPSYSPSSPRY-SPTS--PTYSPTSPTYSPTSPTYSPTSPTYSP 1705
Score = 30.8 bits (68), Expect = 5.1
Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 4/132 (3%)
Query: 101 WDSVAKTYTATEEVWN----NYLKSHPSHKNLQGKSMIDYDYLKIVVGGGVSSGNNSIAL 156
+ + TY+ T ++ Y + PS+++ G S Y +S + S
Sbjct: 1682 YSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPSYSPTS 1741
Query: 157 DPEDTDATTFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSP 216
+ + S ++ +Y+P S + Y P SP P+ +P+ P SP
Sbjct: 1742 PQYSPTSPQYSPSSPTYTPSSPTYNPTSPRGFSSPQYSPTSPTYSPTSPSYTPSSPQYSP 1801
Query: 217 HFSLNSEAPIEK 228
+ +P E+
Sbjct: 1802 TSPTYTPSPSEQ 1813
>N551_SOYBN (Q05544) Early nodulin 55-1 (N-55-1) (Fragment)
Length = 137
Score = 35.0 bits (79), Expect = 0.27
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 200 PSPNQPTPSPN---QPTPSPHFSLNSEAPIEKRNRHKRNRSEYERSSGVV 246
PSP+ P+PSP+ P+PSP SL+S +P N RS GV+
Sbjct: 78 PSPSSPSPSPSPSPSPSPSPSPSLSSPSPSPLPNNQGVTRSSGAEFIGVM 127
>EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)
Length = 283
Score = 35.0 bits (79), Expect = 0.27
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 189 APDNYEPAYQPPSPNQPTPSPNQPTPSPH 217
+P Y P +PP+ PT +P P P+PH
Sbjct: 208 SPPTYTPTPKPPATKPPTSTPTHPKPTPH 236
Score = 31.2 bits (69), Expect = 3.9
Identities = 15/43 (34%), Positives = 20/43 (45%), Gaps = 4/43 (9%)
Query: 190 PDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNSEAPIEKRNRH 232
P Y P+ +PP PTP P P +P N + P+ K H
Sbjct: 144 PPVYTPSPKPPVTKPPTPKPTPPVYTP----NPKPPVTKPPTH 182
>RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) (RPB1)
Length = 1970
Score = 34.7 bits (78), Expect = 0.35
Identities = 20/58 (34%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNS 222
++ S S+ SY P S ++ +P + P+Y P SPN SPN SP +S S
Sbjct: 1712 SYSPTSPSYSPTSPSYSPTSPSY-SPTS--PSYSPTSPNYSPTSPNYTPTSPSYSPTS 1766
Score = 33.5 bits (75), Expect = 0.78
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 144 GGGVSSGNNSIALDPEDTDATTFEQESESFGMEDFSYDPNSDTFIAPD-NYEPAYQPPSP 202
GG +S + + E + +S S+ SY P S ++ NY P SP
Sbjct: 1586 GGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSP 1645
Query: 203 NQPTPSPNQPTPSP 216
P+ SP P+ SP
Sbjct: 1646 TSPSYSPTSPSYSP 1659
Score = 32.0 bits (71), Expect = 2.3
Identities = 18/58 (31%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNS 222
++ S ++ +Y P S ++ +P + P+Y P SPN SPN SP +S S
Sbjct: 1740 SYSPTSPNYSPTSPNYTPTSPSY-SPTS--PSYSPTSPNYTPTSPNYSPTSPSYSPTS 1794
Score = 31.2 bits (69), Expect = 3.9
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNS 222
T+ S S+ SY P S + P+Y P SP SP SP +S S
Sbjct: 1817 TYTPSSPSYSPSSPSYSPTSPKYTPTS---PSYSPSSPEYTPASPKYSPTSPKYSPTS 1871
Score = 30.8 bits (68), Expect = 5.1
Identities = 18/58 (31%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNS 222
++ S S+ SY P S ++ +P + P+Y P SP+ SP+ SP +S S
Sbjct: 1684 SYSPTSPSYSPTSPSYSPTSPSY-SPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTS 1738
Score = 30.8 bits (68), Expect = 5.1
Identities = 18/58 (31%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNS 222
++ S S+ SY P S ++ +P + P+Y P SP+ SP+ SP +S S
Sbjct: 1670 SYSPTSPSYSPTSPSYSPTSPSY-SPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTS 1724
Score = 30.8 bits (68), Expect = 5.1
Identities = 18/58 (31%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNS 222
++ S S+ SY P S ++ +P + P+Y P SP+ SP+ SP +S S
Sbjct: 1677 SYSPTSPSYSPTSPSYSPTSPSY-SPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTS 1731
Score = 30.8 bits (68), Expect = 5.1
Identities = 18/58 (31%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNS 222
++ S S+ SY P S ++ +P + P+Y P SP+ SP+ SP +S S
Sbjct: 1642 SYSPTSPSYSPTSPSYSPTSPSY-SPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTS 1696
Score = 30.8 bits (68), Expect = 5.1
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 179 SYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNSEAPIEKRNRHKRNRSE 238
SY P S ++ +P + P Y P SPN SP+ SP +S S + R+
Sbjct: 1761 SYSPTSPSY-SPTS--PNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPT 1817
Query: 239 YERSS 243
Y SS
Sbjct: 1818 YTPSS 1822
Score = 30.4 bits (67), Expect = 6.6
Identities = 18/57 (31%), Positives = 28/57 (48%), Gaps = 3/57 (5%)
Query: 166 FEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNS 222
+ S S+ SY P S ++ +P + P+Y P SP+ SP+ SP +S S
Sbjct: 1636 YSPTSPSYSPTSPSYSPTSPSY-SPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTS 1689
>RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) (RPB1)
Length = 1970
Score = 34.7 bits (78), Expect = 0.35
Identities = 20/58 (34%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNS 222
++ S S+ SY P S ++ +P + P+Y P SPN SPN SP +S S
Sbjct: 1712 SYSPTSPSYSPTSPSYSPTSPSY-SPTS--PSYSPTSPNYSPTSPNYTPTSPSYSPTS 1766
Score = 33.5 bits (75), Expect = 0.78
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 144 GGGVSSGNNSIALDPEDTDATTFEQESESFGMEDFSYDPNSDTFIAPD-NYEPAYQPPSP 202
GG +S + + E + +S S+ SY P S ++ NY P SP
Sbjct: 1586 GGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSP 1645
Query: 203 NQPTPSPNQPTPSP 216
P+ SP P+ SP
Sbjct: 1646 TSPSYSPTSPSYSP 1659
Score = 32.0 bits (71), Expect = 2.3
Identities = 18/58 (31%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNS 222
++ S ++ +Y P S ++ +P + P+Y P SPN SPN SP +S S
Sbjct: 1740 SYSPTSPNYSPTSPNYTPTSPSY-SPTS--PSYSPTSPNYTPTSPNYSPTSPSYSPTS 1794
Score = 31.2 bits (69), Expect = 3.9
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNS 222
T+ S S+ SY P S + P+Y P SP SP SP +S S
Sbjct: 1817 TYTPSSPSYSPSSPSYSPTSPKYTPTS---PSYSPSSPEYTPTSPKYSPTSPKYSPTS 1871
Score = 30.8 bits (68), Expect = 5.1
Identities = 18/58 (31%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNS 222
++ S S+ SY P S ++ +P + P+Y P SP+ SP+ SP +S S
Sbjct: 1677 SYSPTSPSYSPTSPSYSPTSPSY-SPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTS 1731
Score = 30.8 bits (68), Expect = 5.1
Identities = 18/58 (31%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNS 222
++ S S+ SY P S ++ +P + P+Y P SP+ SP+ SP +S S
Sbjct: 1649 SYSPTSPSYSPTSPSYSPTSPSY-SPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTS 1703
Score = 30.8 bits (68), Expect = 5.1
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 179 SYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNSEAPIEKRNRHKRNRSE 238
SY P S ++ +P + P Y P SPN SP+ SP +S S + R+
Sbjct: 1761 SYSPTSPSY-SPTS--PNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPT 1817
Query: 239 YERSS 243
Y SS
Sbjct: 1818 YTPSS 1822
Score = 30.8 bits (68), Expect = 5.1
Identities = 18/58 (31%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNS 222
++ S S+ SY P S ++ +P + P+Y P SP+ SP+ SP +S S
Sbjct: 1684 SYSPTSPSYSPTSPSYSPTSPSY-SPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTS 1738
Score = 30.4 bits (67), Expect = 6.6
Identities = 18/57 (31%), Positives = 28/57 (48%), Gaps = 3/57 (5%)
Query: 166 FEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNS 222
+ S S+ SY P S ++ +P + P+Y P SP+ SP+ SP +S S
Sbjct: 1636 YSPTSPSYSPTSPSYSPTSPSY-SPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTS 1689
>RPB1_DICDI (P35084) DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) (Fragment)
Length = 902
Score = 34.7 bits (78), Expect = 0.35
Identities = 21/74 (28%), Positives = 35/74 (46%), Gaps = 3/74 (4%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNSEA 224
++ S S+ SY P S ++ +P + P+Y P SP+ SP+ SP +S +S
Sbjct: 832 SYSPTSPSYSPTSPSYSPTSPSY-SPTS--PSYSPSSPSYSPSSPSYSPSSPSYSPSSPT 888
Query: 225 PIEKRNRHKRNRSE 238
K N N+ +
Sbjct: 889 FTNKYNYQPNNKKK 902
Score = 32.3 bits (72), Expect = 1.7
Identities = 19/58 (32%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNS 222
T+ S S+ SY P S ++ +P + P+Y P SP+ SP+ SP +S S
Sbjct: 727 TYSPTSPSYSPTSPSYSPTSPSY-SPTS--PSYSPTSPSYSPTSPSYSPTSPFYSPTS 781
Score = 32.0 bits (71), Expect = 2.3
Identities = 21/79 (26%), Positives = 36/79 (44%), Gaps = 3/79 (3%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNSEA 224
++ S S+ SY P S ++ +P + P+Y P SP+ SP+ SP +S +S +
Sbjct: 811 SYSPTSPSYSPTSPSYSPTSPSY-SPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPSSPS 867
Query: 225 PIEKRNRHKRNRSEYERSS 243
+ + Y SS
Sbjct: 868 YSPSSPSYSPSSPSYSPSS 886
Score = 31.2 bits (69), Expect = 3.9
Identities = 19/58 (32%), Positives = 28/58 (47%), Gaps = 3/58 (5%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNS 222
++ S S+ SY P S F +P + P+Y P SP+ SP+ SP +S S
Sbjct: 755 SYSPTSPSYSPTSPSYSPTSP-FYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTS 809
Score = 30.8 bits (68), Expect = 5.1
Identities = 18/58 (31%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNS 222
++ S S+ SY P S ++ +P + P+Y P SP+ SP+ SP +S S
Sbjct: 783 SYSPTSPSYSPTSPSYSPTSPSY-SPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTS 837
>RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) (RPB1) (Fragment)
Length = 467
Score = 34.7 bits (78), Expect = 0.35
Identities = 20/58 (34%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNS 222
++ S S+ SY P S ++ +P + P+Y P SPN SPN SP +S S
Sbjct: 209 SYSPTSPSYSPTSPSYSPTSPSY-SPTS--PSYSPTSPNYSPTSPNYTPTSPSYSPTS 263
Score = 33.5 bits (75), Expect = 0.78
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 144 GGGVSSGNNSIALDPEDTDATTFEQESESFGMEDFSYDPNSDTFIAPD-NYEPAYQPPSP 202
GG +S + + E + +S S+ SY P S ++ NY P SP
Sbjct: 83 GGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSP 142
Query: 203 NQPTPSPNQPTPSP 216
P+ SP P+ SP
Sbjct: 143 TSPSYSPTSPSYSP 156
Score = 32.0 bits (71), Expect = 2.3
Identities = 18/58 (31%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNS 222
++ S ++ +Y P S ++ +P + P+Y P SPN SPN SP +S S
Sbjct: 237 SYSPTSPNYSPTSPNYTPTSPSY-SPTS--PSYSPTSPNYTPTSPNYSPTSPSYSPTS 291
Score = 31.2 bits (69), Expect = 3.9
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNS 222
T+ S S+ SY P S + P+Y P SP SP SP +S S
Sbjct: 314 TYTPSSPSYSPSSPSYSPTSPKYTPTS---PSYSPSSPEYTPTSPKYSPTSPKYSPTS 368
Score = 30.8 bits (68), Expect = 5.1
Identities = 18/58 (31%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNS 222
++ S S+ SY P S ++ +P + P+Y P SP+ SP+ SP +S S
Sbjct: 174 SYSPTSPSYSPTSPSYSPTSPSY-SPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTS 228
Score = 30.8 bits (68), Expect = 5.1
Identities = 18/58 (31%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNS 222
++ S S+ SY P S ++ +P + P+Y P SP+ SP+ SP +S S
Sbjct: 146 SYSPTSPSYSPTSPSYSPTSPSY-SPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTS 200
Score = 30.8 bits (68), Expect = 5.1
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 179 SYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNSEAPIEKRNRHKRNRSE 238
SY P S ++ +P + P Y P SPN SP+ SP +S S + R+
Sbjct: 258 SYSPTSPSY-SPTS--PNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPT 314
Query: 239 YERSS 243
Y SS
Sbjct: 315 YTPSS 319
Score = 30.8 bits (68), Expect = 5.1
Identities = 18/58 (31%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNS 222
++ S S+ SY P S ++ +P + P+Y P SP+ SP+ SP +S S
Sbjct: 181 SYSPTSPSYSPTSPSYSPTSPSY-SPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTS 235
Score = 30.4 bits (67), Expect = 6.6
Identities = 18/57 (31%), Positives = 28/57 (48%), Gaps = 3/57 (5%)
Query: 166 FEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNS 222
+ S S+ SY P S ++ +P + P+Y P SP+ SP+ SP +S S
Sbjct: 133 YSPTSPSYSPTSPSYSPTSPSY-SPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTS 186
>RPB1_ASHGO (Q75A34) DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) (RNA polymerase II subunit 1)
Length = 1745
Score = 34.7 bits (78), Expect = 0.35
Identities = 19/69 (27%), Positives = 30/69 (42%), Gaps = 1/69 (1%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPD-NYEPAYQPPSPNQPTPSPNQPTPSPHFSLNSE 223
++ S S+ SY P S ++ +Y P SP P SP P+ SP F+ N +
Sbjct: 1677 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPQYSPRSPSYSPSFNNNDK 1736
Query: 224 APIEKRNRH 232
++ H
Sbjct: 1737 EQKDENGTH 1745
Score = 32.7 bits (73), Expect = 1.3
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 145 GGVSSGNNSIALDPEDTDATTFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQ 204
G VSS S + ++ S S+ SY P S ++ +P + P+Y P SP+
Sbjct: 1538 GDVSSPGFSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTS--PSYSPTSPSY 1594
Query: 205 PTPSPNQPTPSPHFSLNS 222
SP+ SP +S S
Sbjct: 1595 SPTSPSYSPTSPSYSPTS 1612
Score = 32.0 bits (71), Expect = 2.3
Identities = 19/74 (25%), Positives = 35/74 (46%), Gaps = 3/74 (4%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNSEA 224
++ S S+ SY P S ++ +P + P+Y P SP+ SP+ SP +S S +
Sbjct: 1670 SYSPTSPSYSPTSPSYSPTSPSY-SPTS--PSYSPTSPSYSPTSPSYSPTSPQYSPRSPS 1726
Query: 225 PIEKRNRHKRNRSE 238
N + + + +
Sbjct: 1727 YSPSFNNNDKEQKD 1740
Score = 30.8 bits (68), Expect = 5.1
Identities = 18/58 (31%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNS 222
++ S S+ SY P S ++ +P + P+Y P SP+ SP+ SP +S S
Sbjct: 1607 SYSPTSPSYSPTSPSYSPTSPSY-SPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTS 1661
Score = 30.8 bits (68), Expect = 5.1
Identities = 18/58 (31%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNS 222
++ S S+ SY P S ++ +P + P+Y P SP+ SP+ SP +S S
Sbjct: 1572 SYSPTSPSYSPTSPSYSPTSPSY-SPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTS 1626
Score = 30.8 bits (68), Expect = 5.1
Identities = 18/58 (31%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNS 222
++ S S+ SY P S ++ +P + P+Y P SP+ SP+ SP +S S
Sbjct: 1621 SYSPTSPSYSPTSPSYSPTSPSY-SPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTS 1675
Score = 30.8 bits (68), Expect = 5.1
Identities = 18/58 (31%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNS 222
++ S S+ SY P S ++ +P + P+Y P SP+ SP+ SP +S S
Sbjct: 1579 SYSPTSPSYSPTSPSYSPTSPSY-SPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTS 1633
Score = 30.8 bits (68), Expect = 5.1
Identities = 18/58 (31%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNS 222
++ S S+ SY P S ++ +P + P+Y P SP+ SP+ SP +S S
Sbjct: 1642 SYSPTSPSYSPTSPSYSPTSPSY-SPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTS 1696
>PPRB_HUMAN (Q15648) Peroxisome proliferator-activated receptor
binding protein (PBP) (PPAR binding protein) (Thyroid
hormone receptor-associated protein complex 220 kDa
component) (Trap220) (Thyroid receptor interacting
protein 2) (TRIP2) (p53 regulatory
Length = 1581
Score = 34.7 bits (78), Expect = 0.35
Identities = 30/112 (26%), Positives = 46/112 (40%), Gaps = 11/112 (9%)
Query: 117 NYLKSHPSH--KNLQGKSMIDYDY-------LKIVVGGGVSSGNNSIALDPEDTDATTFE 167
N LK +P+ L G S ++ ++I G + S L PE T +
Sbjct: 647 NLLKDNPAQDFSTLYGSSPLERQNSSSGSPRMEICSGSNKTKKKKSSRLPPEKPKHQTED 706
Query: 168 Q-ESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQ-PTPSPNQPTPSPH 217
+ E F M+ S +P D + D + + P+P+Q TP P P PH
Sbjct: 707 DFQRELFSMDVDSQNPIFDVNMTADTLDTPHITPAPSQCSTPPTTYPQPVPH 758
>3BP2_HUMAN (P78314) SH3 domain-binding protein 2 (3BP-2)
Length = 561
Score = 34.7 bits (78), Expect = 0.35
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 176 EDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNSEAP 225
ED+ +D D+++ PD+ EP + P P P P+P S+ P
Sbjct: 172 EDYEHDDEDDSYLEPDSPEPGRLEDALMHPPAYPPPPVPTPRKPAFSDMP 221
>RPB1_ENCCU (Q8SSC4) DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) (RNA polymerase II subunit 1)
Length = 1599
Score = 34.3 bits (77), Expect = 0.46
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNSEA 224
++ S S+ SY P S ++ +P + P+Y P SP+ SP+ SP +S++ +
Sbjct: 1521 SYSPTSPSYSPTSPSYSPTSPSY-SPTS--PSYSPTSPSYSPTSPSYSPTSPSYSVSMSS 1577
Query: 225 PIEKRNRHKRNRSEYERSSG 244
K ++ + R+ G
Sbjct: 1578 FSNKNKSKNQDGDKKRRNDG 1597
Score = 31.2 bits (69), Expect = 3.9
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNSEA 224
++ S S+ SY P S ++ +P + P+Y P SP+ SP+ FS +++
Sbjct: 1528 SYSPTSPSYSPTSPSYSPTSPSY-SPTS--PSYSPTSPSYSPTSPSYSVSMSSFSNKNKS 1584
Query: 225 PIEKRNRHKRNRSEY 239
+ ++ +RN +
Sbjct: 1585 KNQDGDKKRRNDGSF 1599
Score = 30.8 bits (68), Expect = 5.1
Identities = 18/58 (31%), Positives = 29/58 (49%), Gaps = 3/58 (5%)
Query: 165 TFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNS 222
++ S S+ SY P S ++ +P + P+Y P SP+ SP+ SP +S S
Sbjct: 1493 SYSPTSPSYSPTSPSYSPTSPSY-SPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTS 1547
Score = 30.0 bits (66), Expect = 8.7
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 147 VSSGNNSIALDPEDTDATTFEQESESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPT 206
+SSGN S P + E SY P S ++ +P + P+Y P SP+
Sbjct: 1444 ISSGNWS----PTHLEMAYSRDLGERLSPTSPSYSPTSPSY-SPTS--PSYSPTSPSYSP 1496
Query: 207 PSPNQPTPSPHFSLNS 222
SP+ SP +S S
Sbjct: 1497 TSPSYSPTSPSYSPTS 1512
Score = 30.0 bits (66), Expect = 8.7
Identities = 18/53 (33%), Positives = 27/53 (49%), Gaps = 3/53 (5%)
Query: 170 SESFGMEDFSYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSPHFSLNS 222
S S+ SY P S ++ +P + P+Y P SP+ SP+ SP +S S
Sbjct: 1470 SPSYSPTSPSYSPTSPSY-SPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTS 1519
>EXTN_TOBAC (P13983) Extensin precursor (Cell wall
hydroxyproline-rich glycoprotein)
Length = 620
Score = 34.3 bits (77), Expect = 0.46
Identities = 17/38 (44%), Positives = 19/38 (49%)
Query: 179 SYDPNSDTFIAPDNYEPAYQPPSPNQPTPSPNQPTPSP 216
S+ P T+ PAY PP P PT SP PT SP
Sbjct: 381 SFSPPPPTYEQSPPPPPAYSPPLPAPPTYSPPPPTYSP 418
Score = 32.7 bits (73), Expect = 1.3
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 179 SYDPNSDTFIAPDNYEPAYQPPSP-NQPTPSPNQPTPSPHFS 219
+Y P T+ P P Y PP P P P P P P +S
Sbjct: 415 TYSPPPPTYAQPPPLPPTYSPPPPAYSPPPPPTYSPPPPTYS 456
Score = 30.0 bits (66), Expect = 8.7
Identities = 15/29 (51%), Positives = 16/29 (54%), Gaps = 6/29 (20%)
Query: 195 PAYQPPSPN--QPTPSP----NQPTPSPH 217
P Y PP P QPTPSP +QP P H
Sbjct: 202 PTYSPPPPTHVQPTPSPPSRGHQPQPPTH 230
Score = 30.0 bits (66), Expect = 8.7
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 179 SYDPNSDTFIAPDNYEPAYQPPSPNQPTPSP-----NQPTPSPHFS 219
+Y P T+ P PAY P P PT SP + P PSP +S
Sbjct: 447 TYSPPPPTYSPPP---PAYAQPPPPPPTYSPPPPAYSPPPPSPIYS 489
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.311 0.129 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,421,507
Number of Sequences: 164201
Number of extensions: 1969746
Number of successful extensions: 10424
Number of sequences better than 10.0: 149
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 103
Number of HSP's that attempted gapping in prelim test: 8990
Number of HSP's gapped (non-prelim): 763
length of query: 339
length of database: 59,974,054
effective HSP length: 111
effective length of query: 228
effective length of database: 41,747,743
effective search space: 9518485404
effective search space used: 9518485404
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 66 (30.0 bits)
Medicago: description of AC146551.11