
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146527.10 - phase: 0 /pseudo
(129 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
COX1_CANGA (Q85QA3) Cytochrome c oxidase polypeptide I (EC 1.9.3.1) 34 0.065
COX1_SOYBN (P07506) Cytochrome c oxidase polypeptide I (EC 1.9.3.1) 32 0.19
COX1_PEA (P12786) Cytochrome c oxidase polypeptide I (EC 1.9.3.1) 32 0.19
M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310... 32 0.25
COX1_SACDO (P98001) Cytochrome c oxidase polypeptide I (EC 1.9.3.1) 32 0.25
METB_ARATH (P55217) Cystathionine gamma-synthase, chloroplast pr... 30 0.72
RW1_MOUSE (O70472) RW1 protein 30 0.93
COX1_YEAST (P00401) Cytochrome c oxidase polypeptide I (EC 1.9.3.1) 30 0.93
VA53_DOLMA (P10737) Venom allergen 5.02 precursor (Antigen 5 for... 30 1.2
P60_LISSE (Q01838) Protein p60 precursor (Invasion-associated pr... 29 2.1
MUKB_ACTAC (Q93IE8) Chromosome partition protein mukB (Structura... 29 2.1
FLGK_BUCAP (Q8K9K0) Flagellar hook-associated protein 1 (HAP1) 29 2.1
MASY_STRCL (Q9ZH77) Malate synthase (EC 2.3.3.9) 28 2.7
MASY_MYXXA (P95329) Malate synthase (EC 2.3.3.9) 28 2.7
COX1_KLULA (P20386) Cytochrome c oxidase polypeptide I (EC 1.9.3.1) 28 2.7
Y051_UREPA (Q9PR94) Hypothetical protein UU051 28 3.6
ARAB_ECOLI (P08204) Ribulokinase (EC 2.7.1.16) 28 3.6
ARAB_ECO57 (P58541) Ribulokinase (EC 2.7.1.16) 28 3.6
STT3_SCHPO (O94335) Oligosaccharyl transferase stt3 subunit 28 4.6
SC23_YEAST (P15303) Protein transport protein SEC23 28 4.6
>COX1_CANGA (Q85QA3) Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Length = 534
Score = 33.9 bits (76), Expect = 0.065
Identities = 22/69 (31%), Positives = 36/69 (51%), Gaps = 5/69 (7%)
Query: 63 FSNWNSLGPIGSYVPIID----IHDLHLSVRDVLSAPGNHTQVLYTNLPSAVE-NHINNI 117
F+ WN + +GS++ +I I+ L+ + L+ N+ VLYT P VE N I N+
Sbjct: 447 FAGWNYVASVGSFIAMISLVLFIYILYDQFVNGLTNKANNKSVLYTKSPDFVESNEIFNL 506
Query: 118 HIQFNDNIE 126
+ +IE
Sbjct: 507 NTIKTSSIE 515
>COX1_SOYBN (P07506) Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Length = 527
Score = 32.3 bits (72), Expect = 0.19
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 63 FSNWNSLGPIGSYVPIIDIHDLHLSVRDVLSAPGNHTQVLYTNLPSAVENH 113
++ WN+L GSY+ ++ I + V + S+ GN+ + N+P AVE +
Sbjct: 449 YAGWNALSSFGSYISVVGIRRFFVVV-TITSSSGNN--ITRANIPWAVEQN 496
>COX1_PEA (P12786) Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Length = 527
Score = 32.3 bits (72), Expect = 0.19
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 63 FSNWNSLGPIGSYVPIIDIHDLHLSVRDVLSAPGNHTQVLYTNLPSAVENH 113
++ WN+L GSY+ ++ I + V + S+ GN+ + N+P AVE +
Sbjct: 449 YAGWNALSSFGSYISVVGIRRFFVVV-TITSSSGNN--ITRANIPWAVEQN 496
>M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310
(ORF154)
Length = 154
Score = 32.0 bits (71), Expect = 0.25
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 1 MVQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSG-SS 59
++ + L LL ++Y + + S + S W SII + +L G IG G +
Sbjct: 77 IIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLLRTIGDGIHT 136
Query: 60 SFWFSNW 66
W W
Sbjct: 137 KVWLDRW 143
>COX1_SACDO (P98001) Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Length = 534
Score = 32.0 bits (71), Expect = 0.25
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 63 FSNWNSLGPIGSYVPIID----IHDLHLSVRDVLSAPGNHTQVLYTNLPSAVE-NHINNI 117
F+ WN + IGS++ + I+ L+ + + L+ N+ V+YT P VE N I N+
Sbjct: 447 FAGWNYVASIGSFIATLSLFLFIYILYDQLVNGLNNKVNNKSVIYTKAPDFVESNTIFNL 506
Query: 118 HIQFNDNIE 126
+ + +IE
Sbjct: 507 NTVKSSSIE 515
>METB_ARATH (P55217) Cystathionine gamma-synthase, chloroplast
precursor (EC 2.5.1.48) (CGS) (O-succinylhomoserine
(Thiol)-lyase)
Length = 563
Score = 30.4 bits (67), Expect = 0.72
Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 29/111 (26%)
Query: 14 SNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSSSFWFSNWNSLGPIG 73
+ KY GGHN +LA S S I ++L +L P
Sbjct: 377 ATKYIGGHNDVLAGCICGSLKLVSEIRNLHHVL-------------------GGTLNPNA 417
Query: 74 SYVPIIDIHDLHLSVR----------DVLSAPGNHTQVLYTNLPSAVENHI 114
+Y+ I + LHL V+ ++L A + V Y LPS E+ +
Sbjct: 418 AYLIIRGMKTLHLRVQQQNSTAFRMAEILEAHPKVSHVYYPGLPSHPEHEL 468
>RW1_MOUSE (O70472) RW1 protein
Length = 1829
Score = 30.0 bits (66), Expect = 0.93
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 11/78 (14%)
Query: 3 QSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTW-----SSIIRAKNIL-KEGYTWRIGS 56
QS+ + W N++ G + L S +++ SP+W S A +IL W
Sbjct: 1695 QSSQRSW-----NEFNSGPSYLWDSPATDPSPSWPASSSSPTHTATSILGNSSGLWSTTP 1749
Query: 57 GSSSFWFSNWNSLGPIGS 74
SSS W SN NS P +
Sbjct: 1750 FSSSIWSSNINSNLPFST 1767
>COX1_YEAST (P00401) Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Length = 534
Score = 30.0 bits (66), Expect = 0.93
Identities = 20/69 (28%), Positives = 36/69 (51%), Gaps = 5/69 (7%)
Query: 63 FSNWNSLGPIGSYVPIID----IHDLHLSVRDVLSAPGNHTQVLYTNLPSAVE-NHINNI 117
F+ WN + IGS++ + I+ L+ + + L+ N+ V+Y P VE N I N+
Sbjct: 447 FAGWNYVASIGSFIATLSLFLFIYILYDQLVNGLNNKVNNKSVIYNKAPDFVESNTIFNL 506
Query: 118 HIQFNDNIE 126
+ + +IE
Sbjct: 507 NTVKSSSIE 515
>VA53_DOLMA (P10737) Venom allergen 5.02 precursor (Antigen 5 form
3) (Ag5-3) (Allergen Dol m 5.02) (Dol m V-B) (Fragment)
Length = 215
Score = 29.6 bits (65), Expect = 1.2
Identities = 25/94 (26%), Positives = 38/94 (39%), Gaps = 31/94 (32%)
Query: 14 SNKYTGGHNTLLASASSNSSPTWSSIIRA-KNILKE------------------------ 48
+ KY G N +AS + NS T S +I +N +K+
Sbjct: 114 TEKYQVGQNVAIASTTGNSYATMSKLIEMWENEVKDFNPKKGTMGDNNFSKVGHYTQMVW 173
Query: 49 GYTWRIGSGSSSFWFSNWN------SLGPIGSYV 76
G T IG GS + +NW+ + GP G+Y+
Sbjct: 174 GKTKEIGCGSVKYIENNWHTHYLVCNYGPAGNYM 207
>P60_LISSE (Q01838) Protein p60 precursor (Invasion-associated
protein)
Length = 523
Score = 28.9 bits (63), Expect = 2.1
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 14 SNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSSSFWFSNWNS 68
SN T N +SSNSS + I A+ L + Y+W G+G ++F S + S
Sbjct: 387 SNTSTPSKNNNTNQSSSNSSSASAIIAEAQKHLGKAYSWG-GNGPTTFDCSGFTS 440
>MUKB_ACTAC (Q93IE8) Chromosome partition protein mukB (Structural
maintenance of chromosome related protein)
Length = 1496
Score = 28.9 bits (63), Expect = 2.1
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 11/117 (9%)
Query: 10 VSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSSSFWFSNWNSL 69
+S L+ + TG L S+ S ++ +I R +N ++ + G + F
Sbjct: 1244 LSRLTEELTGREQKLAISSESVANIMRKTIQREQNRIR-----MLNQGLQNIAF------ 1292
Query: 70 GPIGSYVPIIDIHDLHLSVRDVLSAPGNHTQVLYTNLPSAVENHINNIHIQFNDNIE 126
G + S +++I D H + D LS + Q L+T+ I ++ + N +I+
Sbjct: 1293 GQVKSVRLVVNIRDTHAMLLDALSGNQSDYQDLFTDNRMTFSEAIAKLYQRLNPHID 1349
>FLGK_BUCAP (Q8K9K0) Flagellar hook-associated protein 1 (HAP1)
Length = 544
Score = 28.9 bits (63), Expect = 2.1
Identities = 17/46 (36%), Positives = 25/46 (53%), Gaps = 1/46 (2%)
Query: 85 HLSVRDVLSAPGNHTQVLYTNLPSAVENHINNIHIQ-FNDNIEDAL 129
+L + D+ N +L L S++EN I N H FN+NIE+ L
Sbjct: 88 YLKLEDLFGEKSNIFTLLINQLYSSIENDIVNNHGNVFNENIENNL 133
>MASY_STRCL (Q9ZH77) Malate synthase (EC 2.3.3.9)
Length = 541
Score = 28.5 bits (62), Expect = 2.7
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 15 NKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRI 54
N G LA +S+PTW ++I + L + Y RI
Sbjct: 105 NALNSGARVWLADFEDSSAPTWENVISGQLALSDAYHRRI 144
>MASY_MYXXA (P95329) Malate synthase (EC 2.3.3.9)
Length = 541
Score = 28.5 bits (62), Expect = 2.7
Identities = 12/47 (25%), Positives = 24/47 (50%)
Query: 2 VQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKE 48
V+ T + ++ N G N +A +SPTW +++R + L++
Sbjct: 98 VEITGPVDRKMVINALNSGANVFMADFEDANSPTWDNVVRGQINLRD 144
>COX1_KLULA (P20386) Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Length = 534
Score = 28.5 bits (62), Expect = 2.7
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 14/60 (23%)
Query: 63 FSNWNSLGPIGSYVPIIDIHDLHLSVRDVLSAPGNHTQVLYTNLPSAVENHINNIHIQFN 122
F+ WN + IGS II + L L + +LY L + +EN +NN + +N
Sbjct: 447 FAGWNYVASIGS---IIAVFSLFLFI-----------YILYDQLVNGLENKVNNKSVIYN 492
>Y051_UREPA (Q9PR94) Hypothetical protein UU051
Length = 170
Score = 28.1 bits (61), Expect = 3.6
Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 4/106 (3%)
Query: 10 VSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGS---SSFWFSNW 66
++LL NK N LL + N TW I + E +I + + F
Sbjct: 20 ITLLENKKFNIDNGLLY-VNVNEENTWQKIENNTVLAYEIILLKIVDDDYKKTFYLFLKN 78
Query: 67 NSLGPIGSYVPIIDIHDLHLSVRDVLSAPGNHTQVLYTNLPSAVEN 112
+ + + V I ++DLH ++D L+ NH + L + N
Sbjct: 79 THISVLNNIVKIQALNDLHFFIKDGLNKKNNHKKELVDKYKNITNN 124
>ARAB_ECOLI (P08204) Ribulokinase (EC 2.7.1.16)
Length = 565
Score = 28.1 bits (61), Expect = 3.6
Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 14/92 (15%)
Query: 2 VQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYT-------WRI 54
+ S+ W +L H T SA + S+ +W + L G T R
Sbjct: 149 IYSSEWFWAKIL-------HVTRQDSAVAQSAASWIELCDWVPALLSGTTRPQDIRRGRC 201
Query: 55 GSGSSSFWFSNWNSLGPIGSYVPIIDIHDLHL 86
+G S W +W L P + + I + HL
Sbjct: 202 SAGHKSLWHESWGGLPPASFFDELDPILNRHL 233
>ARAB_ECO57 (P58541) Ribulokinase (EC 2.7.1.16)
Length = 565
Score = 28.1 bits (61), Expect = 3.6
Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 14/92 (15%)
Query: 2 VQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYT-------WRI 54
+ S+ W +L H T SA + S+ +W + L G T R
Sbjct: 149 IYSSEWFWAKIL-------HVTRQDSAVAQSAASWIELCDWVPALLSGTTRPQDIRRGRC 201
Query: 55 GSGSSSFWFSNWNSLGPIGSYVPIIDIHDLHL 86
+G S W +W L P + + I + HL
Sbjct: 202 SAGHKSLWHESWGGLPPASFFDELDPILNRHL 233
>STT3_SCHPO (O94335) Oligosaccharyl transferase stt3 subunit
Length = 752
Score = 27.7 bits (60), Expect = 4.6
Identities = 12/29 (41%), Positives = 16/29 (54%)
Query: 11 SLLSNKYTGGHNTLLASASSNSSPTWSSI 39
SL Y H ++AS S + PTWSS+
Sbjct: 338 SLWDTNYAKIHIPIIASVSEHQPPTWSSL 366
>SC23_YEAST (P15303) Protein transport protein SEC23
Length = 768
Score = 27.7 bits (60), Expect = 4.6
Identities = 21/68 (30%), Positives = 32/68 (46%), Gaps = 9/68 (13%)
Query: 54 IGSGSSSFWFSNWNSLGPIGSYVPIIDIHDLHLSVRDVLSAPGN-------HTQVLYTNL 106
IG G++S W SL P SY +I + + ++SAPG+ +TQ + T
Sbjct: 437 IGIGATSTW--KMASLSPYHSYAIFFEIANTAANSNPMMSAPGSADRPHLAYTQFITTYQ 494
Query: 107 PSAVENHI 114
S+ N I
Sbjct: 495 HSSGTNRI 502
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.314 0.130 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,404,700
Number of Sequences: 164201
Number of extensions: 656424
Number of successful extensions: 1283
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1270
Number of HSP's gapped (non-prelim): 37
length of query: 129
length of database: 59,974,054
effective HSP length: 105
effective length of query: 24
effective length of database: 42,732,949
effective search space: 1025590776
effective search space used: 1025590776
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)
Medicago: description of AC146527.10