Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146527.10 - phase: 0 /pseudo
         (129 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

COX1_CANGA (Q85QA3) Cytochrome c oxidase polypeptide I (EC 1.9.3.1)    34  0.065
COX1_SOYBN (P07506) Cytochrome c oxidase polypeptide I (EC 1.9.3.1)    32  0.19
COX1_PEA (P12786) Cytochrome c oxidase polypeptide I (EC 1.9.3.1)      32  0.19
M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310...    32  0.25
COX1_SACDO (P98001) Cytochrome c oxidase polypeptide I (EC 1.9.3.1)    32  0.25
METB_ARATH (P55217) Cystathionine gamma-synthase, chloroplast pr...    30  0.72
RW1_MOUSE (O70472) RW1 protein                                         30  0.93
COX1_YEAST (P00401) Cytochrome c oxidase polypeptide I (EC 1.9.3.1)    30  0.93
VA53_DOLMA (P10737) Venom allergen 5.02 precursor (Antigen 5 for...    30  1.2
P60_LISSE (Q01838) Protein p60 precursor (Invasion-associated pr...    29  2.1
MUKB_ACTAC (Q93IE8) Chromosome partition protein mukB (Structura...    29  2.1
FLGK_BUCAP (Q8K9K0) Flagellar hook-associated protein 1 (HAP1)         29  2.1
MASY_STRCL (Q9ZH77) Malate synthase (EC 2.3.3.9)                       28  2.7
MASY_MYXXA (P95329) Malate synthase (EC 2.3.3.9)                       28  2.7
COX1_KLULA (P20386) Cytochrome c oxidase polypeptide I (EC 1.9.3.1)    28  2.7
Y051_UREPA (Q9PR94) Hypothetical protein UU051                         28  3.6
ARAB_ECOLI (P08204) Ribulokinase (EC 2.7.1.16)                         28  3.6
ARAB_ECO57 (P58541) Ribulokinase (EC 2.7.1.16)                         28  3.6
STT3_SCHPO (O94335) Oligosaccharyl transferase stt3 subunit            28  4.6
SC23_YEAST (P15303) Protein transport protein SEC23                    28  4.6

>COX1_CANGA (Q85QA3) Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
          Length = 534

 Score = 33.9 bits (76), Expect = 0.065
 Identities = 22/69 (31%), Positives = 36/69 (51%), Gaps = 5/69 (7%)

Query: 63  FSNWNSLGPIGSYVPIID----IHDLHLSVRDVLSAPGNHTQVLYTNLPSAVE-NHINNI 117
           F+ WN +  +GS++ +I     I+ L+    + L+   N+  VLYT  P  VE N I N+
Sbjct: 447 FAGWNYVASVGSFIAMISLVLFIYILYDQFVNGLTNKANNKSVLYTKSPDFVESNEIFNL 506

Query: 118 HIQFNDNIE 126
           +     +IE
Sbjct: 507 NTIKTSSIE 515


>COX1_SOYBN (P07506) Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
          Length = 527

 Score = 32.3 bits (72), Expect = 0.19
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 63  FSNWNSLGPIGSYVPIIDIHDLHLSVRDVLSAPGNHTQVLYTNLPSAVENH 113
           ++ WN+L   GSY+ ++ I    + V  + S+ GN+  +   N+P AVE +
Sbjct: 449 YAGWNALSSFGSYISVVGIRRFFVVV-TITSSSGNN--ITRANIPWAVEQN 496


>COX1_PEA (P12786) Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
          Length = 527

 Score = 32.3 bits (72), Expect = 0.19
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 63  FSNWNSLGPIGSYVPIIDIHDLHLSVRDVLSAPGNHTQVLYTNLPSAVENH 113
           ++ WN+L   GSY+ ++ I    + V  + S+ GN+  +   N+P AVE +
Sbjct: 449 YAGWNALSSFGSYISVVGIRRFFVVV-TITSSSGNN--ITRANIPWAVEQN 496


>M310_ARATH (P93295) Hypothetical mitochondrial protein AtMg00310
           (ORF154)
          Length = 154

 Score = 32.0 bits (71), Expect = 0.25
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 1   MVQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSG-SS 59
           ++   + L   LL ++Y    + +  S  +  S  W SII  + +L  G    IG G  +
Sbjct: 77  IIHQPHTLLSRLLRSRYFPHSSMMECSVGTRPSYAWRSIIHGRELLSRGLLRTIGDGIHT 136

Query: 60  SFWFSNW 66
             W   W
Sbjct: 137 KVWLDRW 143


>COX1_SACDO (P98001) Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
          Length = 534

 Score = 32.0 bits (71), Expect = 0.25
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 63  FSNWNSLGPIGSYVPIID----IHDLHLSVRDVLSAPGNHTQVLYTNLPSAVE-NHINNI 117
           F+ WN +  IGS++  +     I+ L+  + + L+   N+  V+YT  P  VE N I N+
Sbjct: 447 FAGWNYVASIGSFIATLSLFLFIYILYDQLVNGLNNKVNNKSVIYTKAPDFVESNTIFNL 506

Query: 118 HIQFNDNIE 126
           +   + +IE
Sbjct: 507 NTVKSSSIE 515


>METB_ARATH (P55217) Cystathionine gamma-synthase, chloroplast
           precursor (EC 2.5.1.48) (CGS) (O-succinylhomoserine
           (Thiol)-lyase)
          Length = 563

 Score = 30.4 bits (67), Expect = 0.72
 Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 29/111 (26%)

Query: 14  SNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSSSFWFSNWNSLGPIG 73
           + KY GGHN +LA     S    S I    ++L                     +L P  
Sbjct: 377 ATKYIGGHNDVLAGCICGSLKLVSEIRNLHHVL-------------------GGTLNPNA 417

Query: 74  SYVPIIDIHDLHLSVR----------DVLSAPGNHTQVLYTNLPSAVENHI 114
           +Y+ I  +  LHL V+          ++L A    + V Y  LPS  E+ +
Sbjct: 418 AYLIIRGMKTLHLRVQQQNSTAFRMAEILEAHPKVSHVYYPGLPSHPEHEL 468


>RW1_MOUSE (O70472) RW1 protein
          Length = 1829

 Score = 30.0 bits (66), Expect = 0.93
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 11/78 (14%)

Query: 3    QSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTW-----SSIIRAKNIL-KEGYTWRIGS 56
            QS+ + W     N++  G + L  S +++ SP+W     S    A +IL      W    
Sbjct: 1695 QSSQRSW-----NEFNSGPSYLWDSPATDPSPSWPASSSSPTHTATSILGNSSGLWSTTP 1749

Query: 57   GSSSFWFSNWNSLGPIGS 74
             SSS W SN NS  P  +
Sbjct: 1750 FSSSIWSSNINSNLPFST 1767


>COX1_YEAST (P00401) Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
          Length = 534

 Score = 30.0 bits (66), Expect = 0.93
 Identities = 20/69 (28%), Positives = 36/69 (51%), Gaps = 5/69 (7%)

Query: 63  FSNWNSLGPIGSYVPIID----IHDLHLSVRDVLSAPGNHTQVLYTNLPSAVE-NHINNI 117
           F+ WN +  IGS++  +     I+ L+  + + L+   N+  V+Y   P  VE N I N+
Sbjct: 447 FAGWNYVASIGSFIATLSLFLFIYILYDQLVNGLNNKVNNKSVIYNKAPDFVESNTIFNL 506

Query: 118 HIQFNDNIE 126
           +   + +IE
Sbjct: 507 NTVKSSSIE 515


>VA53_DOLMA (P10737) Venom allergen 5.02 precursor (Antigen 5 form
           3) (Ag5-3) (Allergen Dol m 5.02) (Dol m V-B) (Fragment)
          Length = 215

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 25/94 (26%), Positives = 38/94 (39%), Gaps = 31/94 (32%)

Query: 14  SNKYTGGHNTLLASASSNSSPTWSSIIRA-KNILKE------------------------ 48
           + KY  G N  +AS + NS  T S +I   +N +K+                        
Sbjct: 114 TEKYQVGQNVAIASTTGNSYATMSKLIEMWENEVKDFNPKKGTMGDNNFSKVGHYTQMVW 173

Query: 49  GYTWRIGSGSSSFWFSNWN------SLGPIGSYV 76
           G T  IG GS  +  +NW+      + GP G+Y+
Sbjct: 174 GKTKEIGCGSVKYIENNWHTHYLVCNYGPAGNYM 207


>P60_LISSE (Q01838) Protein p60 precursor (Invasion-associated
           protein)
          Length = 523

 Score = 28.9 bits (63), Expect = 2.1
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 14  SNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSSSFWFSNWNS 68
           SN  T   N     +SSNSS   + I  A+  L + Y+W  G+G ++F  S + S
Sbjct: 387 SNTSTPSKNNNTNQSSSNSSSASAIIAEAQKHLGKAYSWG-GNGPTTFDCSGFTS 440


>MUKB_ACTAC (Q93IE8) Chromosome partition protein mukB (Structural
            maintenance of chromosome related protein)
          Length = 1496

 Score = 28.9 bits (63), Expect = 2.1
 Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 11/117 (9%)

Query: 10   VSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGSSSFWFSNWNSL 69
            +S L+ + TG    L  S+ S ++    +I R +N ++      +  G  +  F      
Sbjct: 1244 LSRLTEELTGREQKLAISSESVANIMRKTIQREQNRIR-----MLNQGLQNIAF------ 1292

Query: 70   GPIGSYVPIIDIHDLHLSVRDVLSAPGNHTQVLYTNLPSAVENHINNIHIQFNDNIE 126
            G + S   +++I D H  + D LS   +  Q L+T+        I  ++ + N +I+
Sbjct: 1293 GQVKSVRLVVNIRDTHAMLLDALSGNQSDYQDLFTDNRMTFSEAIAKLYQRLNPHID 1349


>FLGK_BUCAP (Q8K9K0) Flagellar hook-associated protein 1 (HAP1)
          Length = 544

 Score = 28.9 bits (63), Expect = 2.1
 Identities = 17/46 (36%), Positives = 25/46 (53%), Gaps = 1/46 (2%)

Query: 85  HLSVRDVLSAPGNHTQVLYTNLPSAVENHINNIHIQ-FNDNIEDAL 129
           +L + D+     N   +L   L S++EN I N H   FN+NIE+ L
Sbjct: 88  YLKLEDLFGEKSNIFTLLINQLYSSIENDIVNNHGNVFNENIENNL 133


>MASY_STRCL (Q9ZH77) Malate synthase (EC 2.3.3.9)
          Length = 541

 Score = 28.5 bits (62), Expect = 2.7
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 15  NKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRI 54
           N    G    LA    +S+PTW ++I  +  L + Y  RI
Sbjct: 105 NALNSGARVWLADFEDSSAPTWENVISGQLALSDAYHRRI 144


>MASY_MYXXA (P95329) Malate synthase (EC 2.3.3.9)
          Length = 541

 Score = 28.5 bits (62), Expect = 2.7
 Identities = 12/47 (25%), Positives = 24/47 (50%)

Query: 2   VQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKE 48
           V+ T  +   ++ N    G N  +A     +SPTW +++R +  L++
Sbjct: 98  VEITGPVDRKMVINALNSGANVFMADFEDANSPTWDNVVRGQINLRD 144


>COX1_KLULA (P20386) Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
          Length = 534

 Score = 28.5 bits (62), Expect = 2.7
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 14/60 (23%)

Query: 63  FSNWNSLGPIGSYVPIIDIHDLHLSVRDVLSAPGNHTQVLYTNLPSAVENHINNIHIQFN 122
           F+ WN +  IGS   II +  L L +            +LY  L + +EN +NN  + +N
Sbjct: 447 FAGWNYVASIGS---IIAVFSLFLFI-----------YILYDQLVNGLENKVNNKSVIYN 492


>Y051_UREPA (Q9PR94) Hypothetical protein UU051
          Length = 170

 Score = 28.1 bits (61), Expect = 3.6
 Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 4/106 (3%)

Query: 10  VSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYTWRIGSGS---SSFWFSNW 66
           ++LL NK     N LL   + N   TW  I     +  E    +I       + + F   
Sbjct: 20  ITLLENKKFNIDNGLLY-VNVNEENTWQKIENNTVLAYEIILLKIVDDDYKKTFYLFLKN 78

Query: 67  NSLGPIGSYVPIIDIHDLHLSVRDVLSAPGNHTQVLYTNLPSAVEN 112
             +  + + V I  ++DLH  ++D L+   NH + L     +   N
Sbjct: 79  THISVLNNIVKIQALNDLHFFIKDGLNKKNNHKKELVDKYKNITNN 124


>ARAB_ECOLI (P08204) Ribulokinase (EC 2.7.1.16)
          Length = 565

 Score = 28.1 bits (61), Expect = 3.6
 Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 14/92 (15%)

Query: 2   VQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYT-------WRI 54
           + S+   W  +L       H T   SA + S+ +W  +      L  G T        R 
Sbjct: 149 IYSSEWFWAKIL-------HVTRQDSAVAQSAASWIELCDWVPALLSGTTRPQDIRRGRC 201

Query: 55  GSGSSSFWFSNWNSLGPIGSYVPIIDIHDLHL 86
            +G  S W  +W  L P   +  +  I + HL
Sbjct: 202 SAGHKSLWHESWGGLPPASFFDELDPILNRHL 233


>ARAB_ECO57 (P58541) Ribulokinase (EC 2.7.1.16)
          Length = 565

 Score = 28.1 bits (61), Expect = 3.6
 Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 14/92 (15%)

Query: 2   VQSTNKLWVSLLSNKYTGGHNTLLASASSNSSPTWSSIIRAKNILKEGYT-------WRI 54
           + S+   W  +L       H T   SA + S+ +W  +      L  G T        R 
Sbjct: 149 IYSSEWFWAKIL-------HVTRQDSAVAQSAASWIELCDWVPALLSGTTRPQDIRRGRC 201

Query: 55  GSGSSSFWFSNWNSLGPIGSYVPIIDIHDLHL 86
            +G  S W  +W  L P   +  +  I + HL
Sbjct: 202 SAGHKSLWHESWGGLPPASFFDELDPILNRHL 233


>STT3_SCHPO (O94335) Oligosaccharyl transferase stt3 subunit
          Length = 752

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 12/29 (41%), Positives = 16/29 (54%)

Query: 11  SLLSNKYTGGHNTLLASASSNSSPTWSSI 39
           SL    Y   H  ++AS S +  PTWSS+
Sbjct: 338 SLWDTNYAKIHIPIIASVSEHQPPTWSSL 366


>SC23_YEAST (P15303) Protein transport protein SEC23
          Length = 768

 Score = 27.7 bits (60), Expect = 4.6
 Identities = 21/68 (30%), Positives = 32/68 (46%), Gaps = 9/68 (13%)

Query: 54  IGSGSSSFWFSNWNSLGPIGSYVPIIDIHDLHLSVRDVLSAPGN-------HTQVLYTNL 106
           IG G++S W     SL P  SY    +I +   +   ++SAPG+       +TQ + T  
Sbjct: 437 IGIGATSTW--KMASLSPYHSYAIFFEIANTAANSNPMMSAPGSADRPHLAYTQFITTYQ 494

Query: 107 PSAVENHI 114
            S+  N I
Sbjct: 495 HSSGTNRI 502


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.314    0.130    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,404,700
Number of Sequences: 164201
Number of extensions: 656424
Number of successful extensions: 1283
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1270
Number of HSP's gapped (non-prelim): 37
length of query: 129
length of database: 59,974,054
effective HSP length: 105
effective length of query: 24
effective length of database: 42,732,949
effective search space: 1025590776
effective search space used: 1025590776
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)


Medicago: description of AC146527.10