BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146333.5 + phase: 0
(501 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
OFD1_HUMAN (O75665) Oral-facial-digital syndrome 1 protein (Prot... 35 0.35
RLP7_KLULA (P32102) Ribosome biogenesis protein RLP7 33 1.3
PFDB_PYRAB (Q9UYJ4) Prefoldin beta subunit (GimC beta subunit) 33 1.7
YO61_CAEEL (P34600) Hypothetical protein ZK1098.1 in chromosome III 33 2.2
YAJ8_SCHPO (Q09908) Hypothetical protein C30D11.08c in chromosome I 33 2.2
YN37_YEAST (P48563) Hypothetical 186.8 kDa protein in CLA4-PUS4 ... 32 2.9
TPM2_YEAST (P40414) Tropomyosin 2 32 2.9
PFDB_PYRHO (O58268) Prefoldin beta subunit (GimC beta subunit) 32 2.9
PFDB_PYRFU (Q8U3S3) Prefoldin beta subunit (GimC beta subunit) 32 2.9
IF2_AQUAE (O67825) Translation initiation factor IF-2 32 2.9
RX2_BRARE (O42357) Retinal homeobox protein Rx2 32 3.8
PSMR_METJA (Q58576) Proteasome-activating nucleotidase (Proteaso... 32 3.8
HOK1_HUMAN (Q9UJC3) Hook homolog 1 (h-hook1) (hHK1) 32 3.8
ATRX_CAEEL (Q9U7E0) Transcriptional regulator ATRX homolog (X-li... 32 3.8
YV37_VIBCH (O31020) Hypothetical protein VCA0337 32 5.0
Y129_MYCGE (Q49397) Hypothetical protein MG129 32 5.0
PRX1_CHICK (Q91018) Homeobox prospero-like protein PROX1 (PROX 1) 32 5.0
HOK1_MOUSE (Q8BIL5) Hook homolog 1 32 5.0
C5P2_HUMAN (Q96SN8) CDK5 regulatory subunit associated protein 2... 32 5.0
TPM_SCHPO (Q02088) Tropomyosin 31 6.5
>OFD1_HUMAN (O75665) Oral-facial-digital syndrome 1 protein (Protein
71-7A)
Length = 1012
Score = 35.4 bits (80), Expect = 0.35
Identities = 39/140 (27%), Positives = 63/140 (44%), Gaps = 18/140 (12%)
Query: 373 RAEEIGLPYPA--MRHVAASAPSIPLPL--PPTTQEMYQEHLAMESREKQMWKARYNEAE 428
R E+G PA M HV A+A ++PL P Q+ +E E +Q K R E
Sbjct: 836 RQLEMGGLSPAGDMSHVDAAAAAVPLSYQHPSVDQKQIEEQKEEEKIREQQVKERRQREE 895
Query: 429 ----NLIMTLDGKD---EQKTHENLMLKKEL-VKVRRELEEKDELLMQD------SKRAR 474
NL L+ + E+ E M+++ L +K+++ELE ++EL M + S +
Sbjct: 896 RRQSNLQEVLERERRELEKLYQERKMIEESLKIKIKKELEMENELEMSNQEIKDKSAHSE 955
Query: 475 GRRNFYARYCGSDSESESED 494
Y + + + ES D
Sbjct: 956 NPLEKYMKIIQQEQDQESAD 975
>RLP7_KLULA (P32102) Ribosome biogenesis protein RLP7
Length = 318
Score = 33.5 bits (75), Expect = 1.3
Identities = 22/96 (22%), Positives = 43/96 (43%), Gaps = 4/96 (4%)
Query: 403 QEMYQEHLAMESREKQMWKARYNEAENLIMTLDGKDEQKTHENLMLKKELVKVRREL--- 459
QE+ ++ E ++K+ K R+ AE ++ T + +KT + E KV+ +L
Sbjct: 27 QELAKKRKEQEEKQKRSKKNRFVRAETIVATTLATEREKTRIRRVRDLENQKVKNDLSHI 86
Query: 460 -EEKDELLMQDSKRARGRRNFYARYCGSDSESESED 494
++D +L + A + + D E E +D
Sbjct: 87 PSDRDFILRISEREAGSKATSESELQDVDEEDEEDD 122
>PFDB_PYRAB (Q9UYJ4) Prefoldin beta subunit (GimC beta subunit)
Length = 117
Score = 33.1 bits (74), Expect = 1.7
Identities = 25/79 (31%), Positives = 38/79 (47%), Gaps = 10/79 (12%)
Query: 398 LPPTTQEM------YQEHLAMESREKQMWKARYNEAENLIMTL----DGKDEQKTHENLM 447
+PP Q M YQ+ L + ++KQ +A NEA+ + + D KT L+
Sbjct: 4 IPPQVQAMLGQLESYQQQLQLVIQQKQKVQADLNEAKKALEEIEALPDDAQVYKTVGTLI 63
Query: 448 LKKELVKVRRELEEKDELL 466
+K K +EL+EK E L
Sbjct: 64 VKTTKEKALQELKEKVETL 82
>YO61_CAEEL (P34600) Hypothetical protein ZK1098.1 in chromosome III
Length = 724
Score = 32.7 bits (73), Expect = 2.2
Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 13/122 (10%)
Query: 383 AMRHVAASAPSIPLPLPPTTQEMYQEHLAMESREKQMWKARYNEAENLIMTLDGKDEQKT 442
AM+ AS P++PLP +E + + ++ R+ + ++ + N DGK
Sbjct: 194 AMKATLASMPNVPLPSEKKEEESVNDEVELKKRQSERFRELLRDKYN-----DGKITTNC 248
Query: 443 HENLMLK----KELVKVRRELEEKDELL----MQDSKRARGRRNFYARYCGSDSESESED 494
+ + +K ++ ++ EK +L +Q K R + + D E ++
Sbjct: 249 NWDQAVKWIQNDPRFRILNKVSEKKQLFNAWKVQRGKEERDEKRLAIKKSKEDLEKFLQE 308
Query: 495 HP 496
HP
Sbjct: 309 HP 310
>YAJ8_SCHPO (Q09908) Hypothetical protein C30D11.08c in chromosome I
Length = 538
Score = 32.7 bits (73), Expect = 2.2
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 16/98 (16%)
Query: 388 AASAPSIPL---PLPPTTQEMYQEHLAMESREKQMWKA-----RYNEAENLIMTLDGKDE 439
+A P++P PLPP + +AM K+ W A R N A+ L T DG++E
Sbjct: 137 SALPPNVPASSSPLPPMS-------IAMNIARKRSWPASLAIERDNTADALFSTEDGREE 189
Query: 440 QKTHENLMLKKELVKVRRELEEKDELLMQDSKRARGRR 477
Q E + K KV R + + +R GRR
Sbjct: 190 QFNLEGVKTKSGR-KVHRPNHFDPLVKLPTRRRGPGRR 226
>YN37_YEAST (P48563) Hypothetical 186.8 kDa protein in CLA4-PUS4
intergenic region
Length = 1636
Score = 32.3 bits (72), Expect = 2.9
Identities = 23/88 (26%), Positives = 44/88 (49%), Gaps = 2/88 (2%)
Query: 126 VIAKDLYLKTSDVSKHLTTKSHIRGFTSKYLLEQANLETTCQDALEAILALLVYGLILFP 185
V A L L+ S+H +T +R LL + + + LE IL+LL++G+ +
Sbjct: 269 VKAIPLLLRCISSSRHFSTA--VRSCRCLKLLIRKEYLSILELELEVILSLLIHGISVES 326
Query: 186 NLDNFVDMNAIEIFHSRNPVPTLLADMY 213
NL + + ++E+F + P ++ +Y
Sbjct: 327 NLSGWQRVLSLELFKDLSQDPEIVNTLY 354
>TPM2_YEAST (P40414) Tropomyosin 2
Length = 161
Score = 32.3 bits (72), Expect = 2.9
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
Query: 404 EMYQEHLAMESREKQMWKARYNEAENLIMTLDGKDEQKTHE-------NLMLKKELVKVR 456
E +E L E + W+ +Y E + L+ + +K +E N L E+ K+
Sbjct: 2 EKIKEKLNSLKLESESWQEKYEELREQLKELEQSNTEKENEIKSLSAKNEQLDSEVEKLE 61
Query: 457 RELEEKDELLMQDSKRARGRRNFYARYCGSDSESESED 494
+L + + L +DS R Y + D E + ED
Sbjct: 62 SQLSDTKQ-LAEDSNNLRSNNENYTKK-NQDLEQQLED 97
>PFDB_PYRHO (O58268) Prefoldin beta subunit (GimC beta subunit)
Length = 117
Score = 32.3 bits (72), Expect = 2.9
Identities = 25/79 (31%), Positives = 38/79 (47%), Gaps = 10/79 (12%)
Query: 398 LPPTTQEM------YQEHLAMESREKQMWKARYNEAENLIMTL----DGKDEQKTHENLM 447
+PP Q M YQ+ L + ++KQ +A NEA+ + + D KT L+
Sbjct: 4 IPPQVQAMLGQLDTYQQQLQLVIQQKQKVQADLNEAKKALEEIETLPDDAQIYKTVGTLI 63
Query: 448 LKKELVKVRRELEEKDELL 466
+K K +EL+EK E L
Sbjct: 64 VKTTKEKAVQELKEKIETL 82
>PFDB_PYRFU (Q8U3S3) Prefoldin beta subunit (GimC beta subunit)
Length = 117
Score = 32.3 bits (72), Expect = 2.9
Identities = 24/79 (30%), Positives = 39/79 (48%), Gaps = 10/79 (12%)
Query: 398 LPPTTQEM------YQEHLAMESREKQMWKARYNEAENLIMTLDGKDEQ----KTHENLM 447
+PP Q M YQ+ L + ++KQ +A NEA+ + ++ + KT L+
Sbjct: 4 IPPQVQAMLGQLESYQQQLQLVIQQKQKVQADLNEAKKALEEIEKLTDDAVIYKTVGTLI 63
Query: 448 LKKELVKVRRELEEKDELL 466
+K K +EL+EK E L
Sbjct: 64 VKTTKEKALQELKEKVETL 82
>IF2_AQUAE (O67825) Translation initiation factor IF-2
Length = 805
Score = 32.3 bits (72), Expect = 2.9
Identities = 17/73 (23%), Positives = 37/73 (50%)
Query: 401 TTQEMYQEHLAMESREKQMWKARYNEAENLIMTLDGKDEQKTHENLMLKKELVKVRRELE 460
+ +E+ +E L + +EK+ K E + ++ K E++ E KKE K + ++
Sbjct: 127 SVEELIKEILEKKEKEKEKKKVEKERKEEKVRVVEVKKEERKEEKKEEKKEEEKPKIKMS 186
Query: 461 EKDELLMQDSKRA 473
+K+ +M+ + A
Sbjct: 187 KKEREIMRKLEHA 199
>RX2_BRARE (O42357) Retinal homeobox protein Rx2
Length = 327
Score = 32.0 bits (71), Expect = 3.8
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 15/113 (13%)
Query: 36 DLVSLRDLALKVKNQTGFRLRYGGLLTILRTNVEEKLVHTLVQFYDPSFRCFTFPDFQLV 95
D+ S +LA+KV N R++ + +EK+ ++ +D R F P +
Sbjct: 161 DVYSREELAMKV-NLPEVRVQVWFQNRRAKWRRQEKMDTGTMKLHDSPIRSFNRPP--MA 217
Query: 96 PTLEAYSHLL------DSPIAEKTP------FTGPGASLTPLVIAKDLYLKTS 136
P + S+ L SP++ TP F GPG SL P A +L TS
Sbjct: 218 PNVGPMSNSLPLDPWLSSPLSSATPMHSIPGFMGPGQSLQPTYTAHPGFLNTS 270
>PSMR_METJA (Q58576) Proteasome-activating nucleotidase (Proteasome
regulatory subunit)
Length = 430
Score = 32.0 bits (71), Expect = 3.8
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 415 REKQMWKARYNEAENLIMTLDGKDEQKTHENLMLKKELVKVRRELE 460
+E+ KAR E E+ I+ L+ + ++ ENL L KE +RREL+
Sbjct: 40 KEELQEKARIAELESRILKLELEKKELERENLQLMKENEILRRELD 85
>HOK1_HUMAN (Q9UJC3) Hook homolog 1 (h-hook1) (hHK1)
Length = 728
Score = 32.0 bits (71), Expect = 3.8
Identities = 25/79 (31%), Positives = 40/79 (49%), Gaps = 8/79 (10%)
Query: 398 LPPTTQEMYQEHLAMESREKQMWKARYNEAENLIMTLDGKDEQKTHENLMLKKELVKVRR 457
L Q+ ++ AME R +K +A N+I TLD K + E ++L+K+L
Sbjct: 588 LEAALQKKDEDMKAMEER----YKMYLEKARNVIKTLDPKLNPASAEIMLLRKQLA---- 639
Query: 458 ELEEKDELLMQDSKRARGR 476
E E + E+L + K A+ R
Sbjct: 640 EKERRIEILESECKVAKFR 658
>ATRX_CAEEL (Q9U7E0) Transcriptional regulator ATRX homolog
(X-linked nuclear protein-1)
Length = 1359
Score = 32.0 bits (71), Expect = 3.8
Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 408 EHLAMESREKQMWKARYNEAENLIMTLDGKDEQKTHENLMLKKELVKVRRELEEKDELLM 467
E +S++K + +E+ + + ++E+K ++ K++ VK R E E+ +
Sbjct: 134 EEREQKSKKKSKKTKKQTSSES---SEESEEERKVKKSKKNKEKSVKKRAETSEESD--- 187
Query: 468 QDSKRARGRRNFYARYCGSDSESESED 494
+D K ++ + + S+SESESED
Sbjct: 188 EDEKPSKKSKKGLKKKAKSESESESED 214
>YV37_VIBCH (O31020) Hypothetical protein VCA0337
Length = 334
Score = 31.6 bits (70), Expect = 5.0
Identities = 27/101 (26%), Positives = 40/101 (38%), Gaps = 10/101 (9%)
Query: 206 PTLLADM--YHAIHDRTLKGRVYILCCVPLLYRWFISHLPSSFHDNSEDWSYSQRMMALS 263
P L+A Y + D T + +LC Y++ +PSS+ D DW +
Sbjct: 133 PALVASFGEYPPLVDETFHSFIDLLCSETNQYQYT---MPSSWTDIKHDWETQHSAKPVY 189
Query: 264 PNEVVWITPAAQVKEIITGCGDFLNVPLLGTRGGINYNPEL 304
PNE +I II G N+ + G Y PE+
Sbjct: 190 PNEWQFIGKGKVTGRIIGG-----NLNTMAGIWGSRYMPEI 225
>Y129_MYCGE (Q49397) Hypothetical protein MG129
Length = 117
Score = 31.6 bits (70), Expect = 5.0
Identities = 23/64 (35%), Positives = 32/64 (49%), Gaps = 5/64 (7%)
Query: 13 GQIKNFVNITGMKKTKSYKFKEVDLVSLRDL-ALKV----KNQTGFRLRYGGLLTILRTN 67
G +NFVNI FK+V+ VSL L AL + KNQ FR G + L+
Sbjct: 53 GGKENFVNIKTTPTQLIVTFKDVNSVSLTKLNALNIKGINKNQNQFRFVLGNFVNELKKK 112
Query: 68 VEEK 71
+E++
Sbjct: 113 IEDE 116
>PRX1_CHICK (Q91018) Homeobox prospero-like protein PROX1 (PROX 1)
Length = 736
Score = 31.6 bits (70), Expect = 5.0
Identities = 19/81 (23%), Positives = 39/81 (47%), Gaps = 15/81 (18%)
Query: 413 ESREKQMWKARYNEAENLIMTLDGKDEQKTHENLMLKKELVKVRRELEEKDELLMQDSKR 472
E++ KQ W + ++ +++ + EQK E LK++L ++++L + E
Sbjct: 206 ENKRKQNWPQQQQQSFQQLVS--ARKEQKREERRQLKQQLEDMQKQLRQLQE-------- 255
Query: 473 ARGRRNFYARYCGSDSESESE 493
FY Y +DSE++ +
Sbjct: 256 -----EFYQIYDSTDSENDED 271
>HOK1_MOUSE (Q8BIL5) Hook homolog 1
Length = 728
Score = 31.6 bits (70), Expect = 5.0
Identities = 20/63 (31%), Positives = 33/63 (51%), Gaps = 4/63 (6%)
Query: 398 LPPTTQEMYQEHLAMESREKQMWKARYNEAENLIMTLDGKDEQKTHENLMLKKELVKVRR 457
L Q+ ++ AME R +K +A N+I TLD K + E ++L+K+L + R
Sbjct: 588 LEAALQKKDEDMKAMEER----YKMYLEKARNVIKTLDPKLNPASAEIMLLRKQLAEKER 643
Query: 458 ELE 460
+E
Sbjct: 644 RIE 646
>C5P2_HUMAN (Q96SN8) CDK5 regulatory subunit associated protein 2
(CDK5 activator-binding protein C48)
Length = 1893
Score = 31.6 bits (70), Expect = 5.0
Identities = 20/67 (29%), Positives = 33/67 (48%), Gaps = 4/67 (5%)
Query: 428 ENLIMTLDGKDEQKTHENLMLKKELVKVRRELEEKDELLMQDSKRARGRRNFYARYCGSD 487
E + G E N+ LK E+ ++REL+E+++LL++ SK A GS+
Sbjct: 86 ERMQQEFHGPTEHIYKTNIELKVEVESLKRELQEREQLLIKASKAVES----LAEAGGSE 141
Query: 488 SESESED 494
+ ED
Sbjct: 142 IQRVKED 148
>TPM_SCHPO (Q02088) Tropomyosin
Length = 161
Score = 31.2 bits (69), Expect = 6.5
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 389 ASAPSIPLPLPPTTQEMYQEHLAMESREKQMWKARYNEAENLIMTLDGKDEQKTH-ENLM 447
A + L L QE E+ E Q+ + E + L + D +D QKT E L
Sbjct: 27 AKLKEVELQLSLKEQEYESLSRKSEAAESQLEELE-EETKQLRLKADNEDIQKTEAEQLS 85
Query: 448 LKKELVKVRRELEEKDELLMQDSKRAR 474
K EL++ ELE D+LL + +++ R
Sbjct: 86 RKVELLE--EELETNDKLLRETTEKMR 110
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.321 0.136 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,607,946
Number of Sequences: 164201
Number of extensions: 2745548
Number of successful extensions: 7911
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 7893
Number of HSP's gapped (non-prelim): 40
length of query: 501
length of database: 59,974,054
effective HSP length: 114
effective length of query: 387
effective length of database: 41,255,140
effective search space: 15965739180
effective search space used: 15965739180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)
Medicago: description of AC146333.5