BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146333.19 - phase: 0 /pseudo
         (786 letters)

Database: sprot 
           164,201 sequences; 59,974,054 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

MEI2_SCHPO (P08965) Meiosis protein mei2                              138  5e-32
SPEN_DROME (Q8SX83) Split ends protein                                 49  7e-05
PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-bindi...    47  2e-04
NUCL_HUMAN (P19338) Nucleolin (Protein C23)                            47  2e-04
PAB5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-bin...    47  3e-04
PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-b...    44  0.002
RU1A_HUMAN (P09012) U1 small nuclear ribonucleoprotein A (U1 snR...    44  0.002
NUCL_RAT (P13383) Nucleolin (Protein C23)                              44  0.002
PAB3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-bin...    43  0.003
TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1 related protein)           42  0.005
SXL_CHRRU (O97018) Sex-lethal protein homolog                          42  0.005
CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcrip...    42  0.005
NUCL_MESAU (P08199) Nucleolin (Protein C23)                            42  0.006
RU2B_MOUSE (Q9CQI7) U2 small nuclear ribonucleoprotein B"              42  0.008
RU2B_HUMAN (P08579) U2 small nuclear ribonucleoprotein B"              42  0.008
RU1A_XENLA (P45429) U1 small nuclear ribonucleoprotein A (U1 snR...    42  0.008
RS31_ARATH (P92964) Arginine/serine-rich splicing factor RSP31         42  0.008
PAB4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-bin...    42  0.008
NUCL_MOUSE (P09405) Nucleolin (Protein C23)                            42  0.008
FCA_ARATH (O04425) Flowering time control protein FCA                  41  0.014

>MEI2_SCHPO (P08965) Meiosis protein mei2
          Length = 750

 Score =  138 bits (348), Expect = 5e-32
 Identities = 69/136 (50%), Positives = 89/136 (64%)

Query: 649 RYELDIDCIKRGEDNRTTLMIKNIPNKYTSKMLLAAIDEHHKGAYDFVYLPIDFRNKCNV 708
           R  +D   I  G D RTT+MIKNIPNK+T +ML   ID  +KG YDF+YL IDF NKCNV
Sbjct: 581 RNSVDYAQIASGIDTRTTVMIKNIPNKFTQQMLRDYIDVTNKGTYDFLYLRIDFVNKCNV 640

Query: 709 GYAFINMTSPSLIVPFYQGFNGKKWEKFNSEKVASLAYARIQGKAALVAHFQNSSLMNED 768
           GYAFIN   P  I+ F +   G +W  F+SEK+  ++YA IQGK  L+  F+NS +M+E+
Sbjct: 641 GYAFINFIEPQSIITFGKARVGTQWNVFHSEKICDISYANIQGKDRLIEKFRNSCVMDEN 700

Query: 769 KRCRPILIDTDGPNAG 784
              RP +  + GPN G
Sbjct: 701 PAYRPKIFVSHGPNRG 716



 Score = 58.2 bits (139), Expect = 8e-08
 Identities = 53/177 (29%), Positives = 84/177 (46%), Gaps = 20/177 (11%)

Query: 157 ISGVRNSSIAGENS---YGEHPSRTLFVRNIDSDVKDSVLKALFEQFGDIHTFD-RTCKH 212
           ++G R+SS+   +       H SR LFV N+   V  + L  LF + GD+   D  +   
Sbjct: 172 VTGFRSSSLNSNSDDIDIFSHASRYLFVTNLPRIVPYATLLELFSKLGDVKGIDTSSLST 231

Query: 213 QGSAMISYYDIRAAQNAMRALNNRLFGRKKFDIHYPIPKDSPSRNGVNQGTLEVFLYD-- 270
            G  +++++DIR A  A ++L ++ F   +  +++   + S  +  +NQG    FL D  
Sbjct: 232 DGICIVAFFDIRQAIQAAKSLRSQRFFNDRL-LYFQFCQRSSIQKMINQGATIQFLDDNE 290

Query: 271 ----------SSISNTELQHILNVYGGIKEIHENPRSQRHKLI--EFYDFRAADAAL 315
                     S +S  +LQ IL  +G +  I +  RSQ    I  EFYD R A  AL
Sbjct: 291 GQLLLNMQGGSVLSILQLQSILQTFGPLL-IMKPLRSQNVSQIICEFYDTRDASFAL 346


>SPEN_DROME (Q8SX83) Split ends protein
          Length = 5560

 Score = 48.5 bits (114), Expect = 7e-05
 Identities = 42/168 (25%), Positives = 77/168 (45%), Gaps = 18/168 (10%)

Query: 169 NSYGEHPSRTLFVRNIDSDVKDSVLKALFEQFGDIHTFDRTCKHQG---SAMISYYDIRA 225
           + Y    +RTLF+ N++ D+    L++ FE FG+I   D   K QG    A   Y DI +
Sbjct: 648 DEYHPKSTRTLFIGNLEKDITAGELRSHFEAFGEIIEID--IKKQGLNAYAFCQYSDIVS 705

Query: 226 AQNAMRALNNRLFGRKKFDIHY--PIPKDSPSRNGVNQGTLEVFLYDSSISNTELQHILN 283
              AMR ++    G  +  + +   +P +    +GV          D  +S + LQ    
Sbjct: 706 VVKAMRKMDGEHLGSNRIKLGFGKSMPTNCVWIDGV----------DEKVSESFLQSQFT 755

Query: 284 VYGGIKEIHENPRSQRHKLIEFYDFRAADAALHGINRNDTTMKRLKVD 331
            +G + ++  + R+++  L+ +   + A AA+  +       K+L+VD
Sbjct: 756 RFGAVTKVSID-RNRQLALVLYDQVQNAQAAVKDMRGTILRRKKLQVD 802


>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding
           protein) (PABP)
          Length = 653

 Score = 47.0 bits (110), Expect = 2e-04
 Identities = 45/216 (20%), Positives = 88/216 (39%), Gaps = 13/216 (6%)

Query: 145 ENPSSIERNSEIISGVRNSSIAGENSYGEHPSRTLFVRNIDSDVKDSVLKALFEQFGDIH 204
           E P +    SE  S   N+S     S     S +L+V  +D  V +++L  LF   G + 
Sbjct: 48  EEPEAAAEPSESTSTPTNASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVA 107

Query: 205 TFDRTCKHQ------GSAMISYYDIRAAQNAMRALNNRLFGRKKFDIHYPIPKDSPSRNG 258
           +  R C+        G A ++++++   + A+  LN  L   +   I +   +  PS   
Sbjct: 108 SI-RVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMW--SQRDPSLRK 164

Query: 259 VNQGTLEVFLYDSSISNTELQHILNVYGGIKE----IHENPRSQRHKLIEFYDFRAADAA 314
           +  G + +   D +I N  L    + +G I      + E   ++ +  + F    +A+AA
Sbjct: 165 MGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAA 224

Query: 315 LHGINRNDTTMKRLKVDQMQSTNSESNIIQPMHPEF 350
           +  +N      K++ V    S     + ++ +   F
Sbjct: 225 IEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANF 260



 Score = 39.3 bits (90), Expect = 0.041
 Identities = 19/68 (27%), Positives = 39/68 (56%), Gaps = 4/68 (5%)

Query: 179 LFVRNIDSDVKDSVLKALFEQFGDIHTF----DRTCKHQGSAMISYYDIRAAQNAMRALN 234
           ++++N+D+++ +     LF QFG+I +     D+  K +G   ++Y +   AQ A+  LN
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322

Query: 235 NRLFGRKK 242
           ++ +  KK
Sbjct: 323 DKEYKGKK 330



 Score = 36.6 bits (83), Expect = 0.26
 Identities = 26/95 (27%), Positives = 38/95 (39%), Gaps = 7/95 (7%)

Query: 151 ERNSEIISGVRNSSIAGENSYGEHPSRTLFVRNIDSDVKDSVLKALFEQFGDIHT----F 206
           ER  E+        +   N Y       LF++N+  +V D  LKA F  FG I +     
Sbjct: 341 EREEELRKRYEQMKLEKMNKY---QGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMT 397

Query: 207 DRTCKHQGSAMISYYDIRAAQNAMRALNNRLFGRK 241
           D   K +G   + Y     A  A+  +N R+   K
Sbjct: 398 DEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGK 432


>NUCL_HUMAN (P19338) Nucleolin (Protein C23)
          Length = 706

 Score = 47.0 bits (110), Expect = 2e-04
 Identities = 50/222 (22%), Positives = 90/222 (40%), Gaps = 15/222 (6%)

Query: 139 FDLGDVENPSSIERNSEII------SGVRNSSIAGENSYGEHPSRTLFVRNIDSDVKDSV 192
           F   D E+   +E+  E+       + ++     G++S  E  +RTL  +N+   V    
Sbjct: 348 FGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGKDSKKERDARTLLAKNLPYKVTQDE 407

Query: 193 LKALFEQFGDIHTFDRTCKHQGSAMISYYDIRAAQNAMRALNNRLFGRKKFDIHYPIPK- 251
           LK +FE   +I    +  K +G A I +     A+             +   ++Y   K 
Sbjct: 408 LKEVFEDAAEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKG 467

Query: 252 -DSPSRNGVNQ----GTLEVFLYDSSISNTE--LQHILNVYGGIK-EIHENPRSQRHKLI 303
            +   R G N      +  + L + S S TE  LQ +      IK   ++N +S+ +  I
Sbjct: 468 QNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFI 527

Query: 304 EFYDFRAADAALHGINRNDTTMKRLKVDQMQSTNSESNIIQP 345
           EF  F  A  AL+  N+ +   + ++++      S +   QP
Sbjct: 528 EFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQP 569



 Score = 35.8 bits (81), Expect = 0.45
 Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 4/167 (2%)

Query: 167 GENSYGEHPSRTLFVRNIDSDVKDSVLKALFEQFGDIHT-FDRTCKHQGSAMISYYDIRA 225
           G+NS     S+TL + N+     +  L+ +FE+   I    ++  K +G A I +     
Sbjct: 475 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFED 534

Query: 226 AQNAMRALNNRLFGRKKFDIHYPIPKDSPSRNGVNQGTLEVFLYDSSISNTELQHILNVY 285
           A+ A+ + N R    +   +    P+ SP  N  +Q +  +F+   S   TE     +  
Sbjct: 535 AKEALNSCNKREIEGRAIRLELQGPRGSP--NARSQPSKTLFVKGLSEDTTEETLKESFD 592

Query: 286 GGIK-EIHENPRSQRHKLIEFYDFRAADAALHGINRNDTTMKRLKVD 331
           G ++  I  +  +   K   F DF + + A   +   +    ++ +D
Sbjct: 593 GSVRARIVTDRETGSSKGFGFVDFNSEEDAKEAMEDGEIDGNKVTLD 639



 Score = 33.1 bits (74), Expect = 2.9
 Identities = 23/97 (23%), Positives = 40/97 (40%), Gaps = 3/97 (3%)

Query: 167 GENSYGEHPSRTLFVRNIDSDVKDSVLKALFEQFGDIHTFDRTCKHQGSAM-ISYYDIRA 225
           G  +    PS+TLFV+ +  D  +  LK  F+  G +     T +  GS+    + D  +
Sbjct: 561 GSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNS 618

Query: 226 AQNAMRALNNRLFGRKKFDIHYPIPKDSPSRNGVNQG 262
            ++A  A+ +      K  + +  PK      G   G
Sbjct: 619 EEDAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGG 655


>PAB5_ARATH (Q05196) Polyadenylate-binding protein 5
           (Poly(A)-binding protein 5) (PABP 5)
          Length = 668

 Score = 46.6 bits (109), Expect = 3e-04
 Identities = 40/165 (24%), Positives = 71/165 (42%), Gaps = 10/165 (6%)

Query: 163 SSIAGENSYGEHPSRTLFVRNIDSDVKDSVLKALFEQFGDIHTF----DRTCKHQGSAMI 218
           ++ A   +   HP+ +L+V ++D  V +S L  LF Q   +H      D T +  G A +
Sbjct: 31  AAAAAAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYV 90

Query: 219 SYYDIRAAQNAMRALNNRLFGRKKFDIHYPIPKDSPSRNGVNQGTLEVFLYDSSISNTEL 278
           ++ +   A  AM +LN      +   I   +    PS     +G + +   D+SI N  L
Sbjct: 91  NFANPEDASRAMESLNYAPI--RDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKAL 148

Query: 279 QHILNVYGGIKE----IHENPRSQRHKLIEFYDFRAADAALHGIN 319
               + +G I      +    RS+ +  ++F     A AA+  +N
Sbjct: 149 YETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLN 193



 Score = 39.7 bits (91), Expect = 0.031
 Identities = 19/67 (28%), Positives = 37/67 (54%), Gaps = 4/67 (5%)

Query: 179 LFVRNIDSDVKDSVLKALFEQFGDIHTFDRTCKHQGSA----MISYYDIRAAQNAMRALN 234
           L+++N+D  V D  LK +F ++G++ +       QG +     ++Y +   A  AM+ +N
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMN 389

Query: 235 NRLFGRK 241
            ++ GRK
Sbjct: 390 GKMIGRK 396



 Score = 32.7 bits (73), Expect = 3.8
 Identities = 32/136 (23%), Positives = 63/136 (45%), Gaps = 19/136 (13%)

Query: 172 GEHPSRT-LFVRNIDSDVKDSVLKALFEQFGDIHTF----DRTCKHQGSAMISYYDIRAA 226
           G  PS T ++V+N+  ++ D  LK  F ++GDI +     D++   +    +++    AA
Sbjct: 219 GAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAA 278

Query: 227 QNAMRALNNRLFG---------RKKFD----IHYPIPKDSPSRNGVNQGT-LEVFLYDSS 272
             A+  +N    G         +KK D    +     ++  SR    QG+ L +   D S
Sbjct: 279 AVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDS 338

Query: 273 ISNTELQHILNVYGGI 288
           +++ +L+ + + YG +
Sbjct: 339 VNDEKLKEMFSEYGNV 354


>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated
           RNA-binding protein PUB1 (ARS consensus binding protein
           ACBP-60) (Poly(U)-binding protein) (Poly
           uridylate-binding protein)
          Length = 452

 Score = 43.9 bits (102), Expect = 0.002
 Identities = 46/221 (20%), Positives = 88/221 (39%), Gaps = 23/221 (10%)

Query: 144 VENPSSIERNSEIISGVRNSSIAGENSYGEH-PS---------------RTLFVRNIDSD 187
           VE P+S + +SE    V  +S   E++ GE+ PS               R L+V N+D  
Sbjct: 25  VEAPASADPSSEQSVAVEGNSEQAEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKA 84

Query: 188 VKDSVLKALFEQFGDIHT----FDRTCKHQGSAMISYYDIRAAQNAMRALNNRLFGRKKF 243
           + + +LK  F+  G I       D+  K+   A + Y+    A  A++ LN +       
Sbjct: 85  ITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIV 144

Query: 244 DIHYPIPKDSPSRN---GVNQGTLEVFLYDSSISNTELQHILNVYGGIKEIHENPRSQRH 300
            I++       S +    +  G L V + D ++ N        + G +    +   S+ +
Sbjct: 145 KINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGY 204

Query: 301 KLIEFYDFRAADAALHGINRNDTTMKRLKVDQMQSTNSESN 341
             + F     A  A+  +   D   + L+++     ++ +N
Sbjct: 205 GFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNNN 245


>RU1A_HUMAN (P09012) U1 small nuclear ribonucleoprotein A (U1 snRNP
           protein A) (U1A protein) (U1-A)
          Length = 281

 Score = 43.5 bits (101), Expect = 0.002
 Identities = 24/79 (30%), Positives = 42/79 (52%), Gaps = 6/79 (7%)

Query: 175 PSRTLFVRNIDSDVKDSVLK----ALFEQFGDIHTF--DRTCKHQGSAMISYYDIRAAQN 228
           P+ T+++ N++  +K   LK    A+F QFG I      R+ K +G A + + ++ +A N
Sbjct: 7   PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 66

Query: 229 AMRALNNRLFGRKKFDIHY 247
           A+R++    F  K   I Y
Sbjct: 67  ALRSMQGFPFYDKPMRIQY 85


>NUCL_RAT (P13383) Nucleolin (Protein C23)
          Length = 712

 Score = 43.5 bits (101), Expect = 0.002
 Identities = 49/226 (21%), Positives = 93/226 (40%), Gaps = 16/226 (7%)

Query: 135 SNGGFDLGDVENPSSIERNSEII------SGVRNSSIAGENSYGEHPSRTLFVRNIDSDV 188
           +N  F   D E+   +E+  E+       + ++     G +S     +RTL  +N+  ++
Sbjct: 348 TNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNI 407

Query: 189 KDSVLKALFEQFGDIHTFDRTCKHQGSAMISYYDIRAAQNAMRALNNRLFGRKKFDIHYP 248
            +  LK +FE   +I    +  + +G A I +     A+  +          +   ++Y 
Sbjct: 408 TEDELKEVFEDAVEIRLVSQDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 467

Query: 249 IPK-DSPSRNGVNQ----GTLEVFLYDSSISNTE--LQHILNVYGGIKEIHENP--RSQR 299
             K     R G N      +  + L + S S TE  LQ +      IK + +NP  +S+ 
Sbjct: 468 GEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIK-VPQNPHGKSKG 526

Query: 300 HKLIEFYDFRAADAALHGINRNDTTMKRLKVDQMQSTNSESNIIQP 345
           +  IEF  F  A  AL+  N+ +   + ++++      S +   QP
Sbjct: 527 YAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQP 572


>PAB3_ARATH (O64380) Polyadenylate-binding protein 3
           (Poly(A)-binding protein 3) (PABP 3)
          Length = 660

 Score = 43.1 bits (100), Expect = 0.003
 Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 14/156 (8%)

Query: 174 HPSRTLFVRNIDSDVKDSVLKALFEQFGDIHTFDRTCKHQ-----GSAMISYYDIRAAQN 228
           HP+ +L+  ++D  V ++ L  LF+   ++ +  R C+ Q     G A I++ +   A  
Sbjct: 46  HPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSV-RVCRDQNRRSLGYAYINFSNPNDAYR 104

Query: 229 AMRALN-NRLFGRKKFDIHYPIPKDSPSRNGVNQGTLEVFLYDSSISNTELQHILNVYGG 287
           AM ALN   LF R    I   +    PS     +G + +   D+SI N  L    + +G 
Sbjct: 105 AMEALNYTPLFDR---PIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGT 161

Query: 288 IKE----IHENPRSQRHKLIEFYDFRAADAALHGIN 319
           I      +    RS+ +  ++F    +A AA+  +N
Sbjct: 162 ILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197



 Score = 39.7 bits (91), Expect = 0.031
 Identities = 19/77 (24%), Positives = 39/77 (49%), Gaps = 4/77 (5%)

Query: 169 NSYGEHPSRTLFVRNIDSDVKDSVLKALFEQFGDIHTFDRTCKHQGSA----MISYYDIR 224
           N + +     L+++N+D  V D  LK +F ++G++ +       QG +     ++Y +  
Sbjct: 324 NRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPE 383

Query: 225 AAQNAMRALNNRLFGRK 241
            A  A+  +N ++ GRK
Sbjct: 384 EALRALSEMNGKMIGRK 400



 Score = 36.6 bits (83), Expect = 0.26
 Identities = 37/184 (20%), Positives = 75/184 (40%), Gaps = 9/184 (4%)

Query: 179 LFVRNIDSDVKDSVLKALFEQFGDIHT----FDRTCKHQGSAMISYYDIRAAQNAMRALN 234
           +F++N+D+ + +  L   F  FG I +     D T + +G   + +    +AQ A+  LN
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197

Query: 235 NRLFGRKKFDIHYPIPKDSPSR--NGVNQGTLEVFLYD--SSISNTELQHILNVYGGIKE 290
             L   K+  + + I +   +R  N        V++ +    I   EL+     +G I  
Sbjct: 198 GMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISS 257

Query: 291 -IHENPRSQRHKLIEFYDFRAADAALHGINRNDTTMKRLKVDQMQSTNSESNIIQPMHPE 349
            +    +S   +   F +F   +AA   + + +       V  +     +S   + +  +
Sbjct: 258 AVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRK 317

Query: 350 FKQE 353
           F+QE
Sbjct: 318 FEQE 321


>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1 related protein)
          Length = 375

 Score = 42.4 bits (98), Expect = 0.005
 Identities = 34/149 (22%), Positives = 67/149 (44%), Gaps = 12/149 (8%)

Query: 177 RTLFVRNIDSDVKDSVLKALFEQFGDIHTFDRTCKHQGS---AMISYYDIRAAQNAMRAL 233
           RTL+V N+  DV + ++  LF Q G   +     +H  +     + +Y+ R A  A+ A+
Sbjct: 9   RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAM 68

Query: 234 NNRLFGRKKFDIHYPIPKDSPSRNGVNQGTLEVFLYDSS--ISNTELQHILNVYGGIKEI 291
           N R    K+  +++     S  ++  N     VF+ D S  I+  +++     +G I + 
Sbjct: 69  NGRKILGKEVKVNWATTPSSQKKDTSNH--FHVFVGDLSPEITTEDIKSAFAPFGKISDA 126

Query: 292 H-----ENPRSQRHKLIEFYDFRAADAAL 315
                    +S+ +  + FY+   A+ A+
Sbjct: 127 RVVKDMATGKSKGYGFVSFYNKLDAENAI 155



 Score = 32.7 bits (73), Expect = 3.8
 Identities = 39/172 (22%), Positives = 72/172 (41%), Gaps = 28/172 (16%)

Query: 179 LFVRNIDSDVKDSVLKALFEQFGDIHTFD-----RTCKHQGSAMISYYDIRAAQNAMRAL 233
           +FV ++  ++    +K+ F  FG I          T K +G   +S+Y+   A+NA+  +
Sbjct: 99  VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158

Query: 234 NNRLFGRKKFDIHY-----PIPKDSPSRNG--------VNQG-----TLEVFLYDSSISN 275
             +  G ++   ++     P PK +   N         VNQ      T+      S +++
Sbjct: 159 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 218

Query: 276 TELQHILNVYGGIKEIHENPRSQRHKLIEFYDFRAADAALHGI-NRNDTTMK 326
             ++   + +G I EI   P     K   F  F   ++A H I + N TT++
Sbjct: 219 QLMRQTFSPFGQIMEIRVFP----EKGYSFVRFSTHESAAHAIVSVNGTTIE 266


>SXL_CHRRU (O97018) Sex-lethal protein homolog
          Length = 307

 Score = 42.4 bits (98), Expect = 0.005
 Identities = 47/192 (24%), Positives = 76/192 (39%), Gaps = 16/192 (8%)

Query: 135 SNGGFDLGDVENPSSIERNSEIISGVRNSSIAGENSYGEHPSRTLFVRNIDSDVKDSVLK 194
           S GG  +G + N +     + + SG       G+N         L V  +  D+ D  L 
Sbjct: 48  SGGGSAMGSMCNMAPAISTNSVNSG---GGDCGDNQGCN--GTNLIVNYLPQDMTDRELY 102

Query: 195 ALFEQFGDIHTFD-----RTCKHQGSAMISYYDIRAAQNAMRALNNRLFGRKKFDIHYPI 249
           ALF   G I+T       +T    G A + +     AQNA+++LN      K+  + Y  
Sbjct: 103 ALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRLKVSYA- 161

Query: 250 PKDSPSRNGVNQGTLEVFLYDSSISNTELQHILNVYGGI--KEIHENPRSQRHKLIEFYD 307
               P    +    L V     +I++ EL+ I   YG I  K I  +  + + + + F  
Sbjct: 162 ---RPGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVR 218

Query: 308 FRAADAALHGIN 319
           F   + A   I+
Sbjct: 219 FNKREEAQEAIS 230


>CTF1_SCHPO (O43040) Cleavage and termination factor 1
           (Transcription termination factor ctf1)
          Length = 363

 Score = 42.4 bits (98), Expect = 0.005
 Identities = 25/84 (29%), Positives = 38/84 (44%), Gaps = 7/84 (8%)

Query: 179 LFVRNIDSDVKDSVLKALFEQFGDIHTF-----DRTCKHQGSAMISYYDIRAAQNAMRAL 233
           +FV NI  DV +  +  +F Q G + TF       T   +G     ++D      A+R L
Sbjct: 9   VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68

Query: 234 NNRLFGRKKFDIHYPIPKDSPSRN 257
           NN   G +K  + +  P + P RN
Sbjct: 69  NNSELGPRKIRVEF--PSNDPRRN 90


>NUCL_MESAU (P08199) Nucleolin (Protein C23)
          Length = 713

 Score = 42.0 bits (97), Expect = 0.006
 Identities = 48/225 (21%), Positives = 91/225 (40%), Gaps = 14/225 (6%)

Query: 135 SNGGFDLGDVENPSSIERNSEII------SGVRNSSIAGENSYGEHPSRTLFVRNIDSDV 188
           +N  F   D E+   +E+  E+       + ++     G +S     +RTL  +N+  ++
Sbjct: 345 TNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNI 404

Query: 189 KDSVLKALFEQFGDIHTFDRTCKHQGSAMISYYDIRAAQNAMRALNNRLFGRKKFDIHYP 248
            +  LK +FE   +I    +  K +G A I +     A+  +          +   ++Y 
Sbjct: 405 TEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 464

Query: 249 IPK-DSPSRNGVNQ----GTLEVFLYDSSISNTE--LQHILNVYGGIK-EIHENPRSQRH 300
             K     R G N      +  + L + S S TE  LQ +      IK   ++  +S+ +
Sbjct: 465 GEKGQRQERTGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQQGKSKGY 524

Query: 301 KLIEFYDFRAADAALHGINRNDTTMKRLKVDQMQSTNSESNIIQP 345
             IEF  F  A  AL+  N+ +   + ++++      S +   QP
Sbjct: 525 AFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQP 569


>RU2B_MOUSE (Q9CQI7) U2 small nuclear ribonucleoprotein B"
          Length = 225

 Score = 41.6 bits (96), Expect = 0.008
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 10/81 (12%)

Query: 175 PSRTLFVRNIDSDVKDSVLK----ALFEQFGDIHTFD----RTCKHQGSAMISYYDIRAA 226
           P+ T+++ N++  +K   LK    ALF QFG  H  D    +T K +G A + + ++ ++
Sbjct: 5   PNHTIYINNMNDKIKKEELKRSLYALFSQFG--HVVDIVALKTMKMRGQAFVIFKELGSS 62

Query: 227 QNAMRALNNRLFGRKKFDIHY 247
            NA+R L    F  K   I Y
Sbjct: 63  TNALRQLQGFPFYGKPMRIQY 83


>RU2B_HUMAN (P08579) U2 small nuclear ribonucleoprotein B"
          Length = 225

 Score = 41.6 bits (96), Expect = 0.008
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 10/81 (12%)

Query: 175 PSRTLFVRNIDSDVKDSVLK----ALFEQFGDIHTFD----RTCKHQGSAMISYYDIRAA 226
           P+ T+++ N++  +K   LK    ALF QFG  H  D    +T K +G A + + ++ ++
Sbjct: 5   PNHTIYINNMNDKIKKEELKRSLYALFSQFG--HVVDIVALKTMKMRGQAFVIFKELGSS 62

Query: 227 QNAMRALNNRLFGRKKFDIHY 247
            NA+R L    F  K   I Y
Sbjct: 63  TNALRQLQGFPFYGKPMRIQY 83


>RU1A_XENLA (P45429) U1 small nuclear ribonucleoprotein A (U1 snRNP
           protein A) (U1A protein) (U1-A)
          Length = 282

 Score = 41.6 bits (96), Expect = 0.008
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 6/79 (7%)

Query: 175 PSRTLFVRNIDSDVKDSVLK----ALFEQFGDIHTF--DRTCKHQGSAMISYYDIRAAQN 228
           P+ T+++ N++  +K   LK    A+F QFG I      R  K +G A + + +  +A N
Sbjct: 8   PNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRNLKMRGQAFVIFKETSSATN 67

Query: 229 AMRALNNRLFGRKKFDIHY 247
           A+R++    F  K   I Y
Sbjct: 68  ALRSMQGFPFYDKPMRIQY 86


>RS31_ARATH (P92964) Arginine/serine-rich splicing factor RSP31
          Length = 264

 Score = 41.6 bits (96), Expect = 0.008
 Identities = 23/66 (34%), Positives = 39/66 (58%), Gaps = 3/66 (4%)

Query: 177 RTLFVRNIDSDVKDSVLKALFEQFGDIHTFDRTCKHQGSAMISYYDIRAAQNAMRALNNR 236
           R +FV N + + + S L+ LF+++G +   DR     G A + + D R A++A+R L+N 
Sbjct: 2   RPVFVGNFEYETRQSDLERLFDKYGRV---DRVDMKSGYAFVYFEDERDAEDAIRKLDNF 58

Query: 237 LFGRKK 242
            FG +K
Sbjct: 59  PFGYEK 64


>PAB4_HUMAN (Q13310) Polyadenylate-binding protein 4
           (Poly(A)-binding protein 4) (PABP 4) (Inducible
           poly(A)-binding protein) (iPABP) (Activated-platelet
           protein-1) (APP-1)
          Length = 644

 Score = 41.6 bits (96), Expect = 0.008
 Identities = 37/155 (23%), Positives = 69/155 (43%), Gaps = 12/155 (7%)

Query: 174 HPSRTLFVRNIDSDVKDSVLKALFEQFGDIHTFDRTCKHQ------GSAMISYYDIRAAQ 227
           +P  +L+V ++ SDV +++L   F   G + +  R C+        G A +++     A+
Sbjct: 8   YPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSI-RVCRDMITRRSLGYAYVNFQQPADAE 66

Query: 228 NAMRALNNRLFGRKKFDIHYPIPKDSPSRNGVNQGTLEVFLYDSSISNTELQHILNVYGG 287
            A+  +N  +   K   I +     S  ++GV  G + +   D SI N  L    + +G 
Sbjct: 67  RALDTMNFDVIKGKPIRIMWSQRDPSLRKSGV--GNVFIKNLDKSIDNKALYDTFSAFGN 124

Query: 288 I---KEIHENPRSQRHKLIEFYDFRAADAALHGIN 319
           I   K + +   S+ +  + F    AAD A+  +N
Sbjct: 125 ILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMN 159



 Score = 40.0 bits (92), Expect = 0.024
 Identities = 46/234 (19%), Positives = 97/234 (40%), Gaps = 18/234 (7%)

Query: 138 GFDLGDVENPSSIER-----NSEIISG--VRNSSIAGENSYGEHPSRTLFVRNIDSDVKD 190
           G+   + + P+  ER     N ++I G  +R      + S  +     +F++N+D  + +
Sbjct: 53  GYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDN 112

Query: 191 SVLKALFEQFGDIHTFDRTCKHQGS---AMISYYDIRAAQNAMRALNNRLFG-RKKFDIH 246
             L   F  FG+I +    C   GS   A + +    AA  A+  +N  L   RK F   
Sbjct: 113 KALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGR 172

Query: 247 YPIPKDSPSRNGVN-QGTLEVFL--YDSSISNTELQHILNVYG---GIKEIHE-NPRSQR 299
           +   K+  +  G   +    V++  +   + +  L+ + + +G    +K + + N +S+ 
Sbjct: 173 FKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKG 232

Query: 300 HKLIEFYDFRAADAALHGINRNDTTMKRLKVDQMQSTNSESNIIQPMHPEFKQE 353
              + +     A+ A+  +N  + + K + V + Q        ++    + KQE
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQE 286



 Score = 36.6 bits (83), Expect = 0.26
 Identities = 46/216 (21%), Positives = 85/216 (39%), Gaps = 20/216 (9%)

Query: 57  SKKLRLSANNAFYGHSVDTIASNYEEEKLSDSLEELEAQIIGNLLPDEDDLLSGVTDGNN 116
           S+K R +   A      +    N+ EE   +SL+EL +Q    L        +G + G  
Sbjct: 175 SRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFG 234

Query: 117 YIICDSNGDD---IDELDLFSSNG-----GFDLGDVENPSSIERNSEIISGVRNSSIAGE 168
           ++  + + D    ++E++    +G     G     VE  + ++R  E +   R S   G 
Sbjct: 235 FVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV 294

Query: 169 NSYGEHPSRTLFVRNIDSDVKDSVLKALFEQFGDIHTFD---RTCKHQGSAMISYYDIRA 225
           N         L+++N+D  + D  L+  F  FG I +        + +G   + +     
Sbjct: 295 N---------LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEE 345

Query: 226 AQNAMRALNNRLFGRKKFDIHYPIPKDSPSRNGVNQ 261
           A  A+  +N R+ G K   +     K+    +  NQ
Sbjct: 346 ATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQ 381


>NUCL_MOUSE (P09405) Nucleolin (Protein C23)
          Length = 706

 Score = 41.6 bits (96), Expect = 0.008
 Identities = 46/221 (20%), Positives = 90/221 (39%), Gaps = 17/221 (7%)

Query: 135 SNGGFDLGDVENPSSIERNSEII------SGVRNSSIAGENSYGEHPSRTLFVRNIDSDV 188
           +N  F   D E+   +E+  E+       + ++     G +S     +RTL  +N+  ++
Sbjct: 346 TNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNI 405

Query: 189 KDSVLKALFEQFGDIHTFDRTCKHQGSAMISYYDIRAAQNAMRALNNRLFGRKKFDIHYP 248
            +  LK +FE   +I    +  K +G A I +     A+  +          +   ++Y 
Sbjct: 406 TEDELKEVFEDAMEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 465

Query: 249 IPK-DSPSRNGV------NQGTLEVFLYDSSISNTELQHILNVYGGIKEIHENP--RSQR 299
             K     R G          TL +     S +   L+ +      IK + +NP  + + 
Sbjct: 466 GEKGQRQERTGKTSTWSGESKTLVLSNLSYSATKETLEEVFEKATFIK-VPQNPHGKPKG 524

Query: 300 HKLIEFYDFRAADAALHGINRNDTTMKRLKVDQMQSTNSES 340
           +  IEF  F  A  AL+  N+ +   + +++ ++Q +NS S
Sbjct: 525 YAFIEFASFEDAKEALNSCNKMEIEGRTIRL-ELQGSNSRS 564



 Score = 32.3 bits (72), Expect = 5.0
 Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 3/100 (3%)

Query: 165 IAGENSYGEHPSRTLFVRNIDSDVKDSVLKALFEQF--GDIHTFDRTCKHQGSAMISYYD 222
           + G NS  + PS+TLFV+ +  D  +  LK  FE      I T   T   +G   + +  
Sbjct: 557 LQGSNSRSQ-PSKTLFVKGLSEDTTEETLKESFEGSVRARIVTDRETGSSKGFGFVDFNS 615

Query: 223 IRAAQNAMRALNNRLFGRKKFDIHYPIPKDSPSRNGVNQG 262
              A+ A  A+ +      K  + +  PK      G   G
Sbjct: 616 EEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGG 655


>FCA_ARATH (O04425) Flowering time control protein FCA
          Length = 747

 Score = 40.8 bits (94), Expect = 0.014
 Identities = 44/192 (22%), Positives = 84/192 (42%), Gaps = 24/192 (12%)

Query: 144 VENPSSIERNSEIISGVRNSSIAGENSYGEHPSRTLFVRNIDSDVKDSVLKALFEQFGDI 203
           V+ P S ++    IS   + S  G +      +  LFV ++     +  ++  FEQ G++
Sbjct: 89  VQQPLSGQKRGYPISD--HGSFTGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNV 146

Query: 204 HTF-----DRTCKHQGSAMISYYDIRAAQNAMRALNNRLF---GRKKFDIHYPIPKDSPS 255
                    RT + QG   + Y   + A  A+RAL+N++    G     + Y        
Sbjct: 147 LEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYA----DGE 202

Query: 256 RNGVNQGTLEVFLYDSSI----SNTELQHILNVYGGIKEIH----ENPRSQRHKLIEFYD 307
           R  +  GTLE  L+  S+    +  E++ I   +G +++++    E  +S+    +++  
Sbjct: 203 RERI--GTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSS 260

Query: 308 FRAADAALHGIN 319
              A AA+ G+N
Sbjct: 261 KETAMAAIDGLN 272


  Database: sprot
    Posted date:  Nov 25, 2004 10:54 AM
  Number of letters in database: 59,974,054
  Number of sequences in database:  164,201
  
Lambda     K      H
   0.324    0.139    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,968,325
Number of Sequences: 164201
Number of extensions: 4014337
Number of successful extensions: 12410
Number of sequences better than 10.0: 141
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 125
Number of HSP's that attempted gapping in prelim test: 12235
Number of HSP's gapped (non-prelim): 267
length of query: 786
length of database: 59,974,054
effective HSP length: 118
effective length of query: 668
effective length of database: 40,598,336
effective search space: 27119688448
effective search space used: 27119688448
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 70 (31.6 bits)