BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146332.5 + phase: 0
(220 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
HDA6_MOUSE (Q9Z2V5) Histone deacetylase 6 (HD6) (Histone deacety... 33 0.52
MRGD_HUMAN (Q8TDS7) Mas-related G-protein coupled receptor membe... 30 4.4
TH2A_TRYBB (Q06222) Glucose transporter 2A 30 5.8
TH23_TRYBB (Q09039) Glucose transporter 2C (Fragment) 30 5.8
ST33_ARATH (Q9SXS2) Probable sulfate transporter 3.3 (AST91) 30 5.8
WZZB_ECO11 (Q05032) Chain length determinant protein (Polysaccha... 29 7.5
YIAN_HAEIN (P44993) Hypothetical protein HI1029 29 9.9
UPPP_STRA5 (Q8E260) Undecaprenyl-diphosphatase (EC 3.6.1.27) (Un... 29 9.9
UPPP_STRA3 (Q8E7M0) Undecaprenyl-diphosphatase (EC 3.6.1.27) (Un... 29 9.9
ATA1_MAKNI (P70083) Sarcoplasmic/endoplasmic reticulum calcium A... 29 9.9
>HDA6_MOUSE (Q9Z2V5) Histone deacetylase 6 (HD6) (Histone
deacetylase mHDA2)
Length = 1149
Score = 33.1 bits (74), Expect = 0.52
Identities = 35/105 (33%), Positives = 45/105 (42%), Gaps = 14/105 (13%)
Query: 4 RREVEESSTAPILESKRTRSNGKGKSIDGDHSPPHAATVVTTKATPLQKGGMKKGIAILD 63
+R+ + +P+ ES T G GK HS P+ A V +KG MKK +
Sbjct: 12 QRKSRHNPQSPLQESSATLKRG-GKKCAVPHSSPNLAEVK-------KKGKMKKLSQPAE 63
Query: 64 FILRLGAIGAALG--AAVIMGTNEQILPFFTQFLQFHAQWDD-FP 105
L +G G L V +GT L F Q FH WDD FP
Sbjct: 64 EDLVVGLQGLDLNPETRVPVGTG---LVFDEQLNDFHCLWDDSFP 105
>MRGD_HUMAN (Q8TDS7) Mas-related G-protein coupled receptor member D
(Beta-alanine receptor) (G protein-coupled receptor
TGR7)
Length = 321
Score = 30.0 bits (66), Expect = 4.4
Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 77 AAVIMGTNEQI-----LPFFTQFLQFHAQWDDFPMFKFFVVANGAAAGFLILSLPFSIVC 131
AA+IMG + L F + QW P + FVV + FLI SLP SI
Sbjct: 183 AALIMGVLTPVMTLSSLTLFVWVRRSSQQWRRQPT-RLFVVVLASVLVFLICSLPLSIYW 241
Query: 132 IVRPLAAGPRFLLVIVDLVLMALVVAAASSAAAVVY 167
V + P + V+ L L + +SSA V+Y
Sbjct: 242 FVLYWLSLPPEMQVLC-FSLSRLSSSVSSSANPVIY 276
>TH2A_TRYBB (Q06222) Glucose transporter 2A
Length = 529
Score = 29.6 bits (65), Expect = 5.8
Identities = 26/94 (27%), Positives = 47/94 (49%), Gaps = 7/94 (7%)
Query: 118 AGFLILSLPFSIVCIVRPLA----AGPRFLLVIVDLVLMALVVAAASSAAAVVYLAHNGS 173
AG +++ + +VC++ P+ A P+ L VD VL + + AA++ L + +
Sbjct: 181 AGRVLMGIGLGVVCVICPMYVNENAHPK--LSKVDGVLFQVFITFGIMLAAMLGLILDKT 238
Query: 174 QDA-NWNAICQQFTDFCQGSSLAVVASFVASVFL 206
+ N + +F FC SS+ VA F+ +FL
Sbjct: 239 VNYDNDPDMAGRFHGFCAVSSVLSVAMFLVGMFL 272
>TH23_TRYBB (Q09039) Glucose transporter 2C (Fragment)
Length = 337
Score = 29.6 bits (65), Expect = 5.8
Identities = 26/94 (27%), Positives = 47/94 (49%), Gaps = 7/94 (7%)
Query: 118 AGFLILSLPFSIVCIVRPLA----AGPRFLLVIVDLVLMALVVAAASSAAAVVYLAHNGS 173
AG +++ + +VC++ P+ A P+ L VD VL + + AA++ L + +
Sbjct: 181 AGRVLMGIGLGVVCVICPMYVNENAHPK--LSKVDGVLFQVFITFGIMLAAMLGLILDKT 238
Query: 174 QDA-NWNAICQQFTDFCQGSSLAVVASFVASVFL 206
+ N + +F FC SS+ VA F+ +FL
Sbjct: 239 VNYDNDPDMAGRFHGFCAVSSVLSVAMFLVGMFL 272
>ST33_ARATH (Q9SXS2) Probable sulfate transporter 3.3 (AST91)
Length = 631
Score = 29.6 bits (65), Expect = 5.8
Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 35/178 (19%)
Query: 61 ILDFILRLGAIGAALGAAVIMGTNE--------------QILPFFTQFLQFHAQWDDFPM 106
I+DF+ + IG GAA+I+ + ++P + Q +W
Sbjct: 173 IIDFLSKATLIGFMGGAAIIVSLQQLKGLLGITHFTKHMSVVPVLSSVFQHTNEW----- 227
Query: 107 FKFFVVANGAAAGFLILSLPFSIVCIVRP----LAAGPRFLLVIVDLVLMALVVAAASSA 162
+ + G FL+ L + + +P ++AG L VIV L+ V A
Sbjct: 228 -SWQTIVMGVC--FLLFLLSTRHLSMKKPKLFWVSAGAPLLSVIVS-TLLVFVFRAERHG 283
Query: 163 AAVVYLAHNGSQDANWNAICQQFTDFCQGSSLAVVASFVASVFLACLVVVSSVALKRT 220
+V+ G +WN + QF GS LA+VA + + + +A+ RT
Sbjct: 284 ISVIGKLPEGLNPPSWNML--QF----HGSHLALVAK--TGLVTGIVSLTEGIAVGRT 333
>WZZB_ECO11 (Q05032) Chain length determinant protein
(Polysaccharide antigen chain regulator)
Length = 327
Score = 29.3 bits (64), Expect = 7.5
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 7 VEESSTAPILESKR---TRSNG-KGKSIDGDHSPPHAATVVTTKATPLQKGGMKKGIAIL 62
VE +T P+ S + TR N + ++++ HA V P+++ KK I ++
Sbjct: 240 VENEATRPLTFSDQYYQTRQNLLEVQALEVAPDSVHAYRYVMKPTLPIRRDSPKKAITLV 299
Query: 63 DFILRLGAIGAALGAAVIMGTN 84
+L IG +GA V++G N
Sbjct: 300 LAVL----IGGMIGAGVVLGRN 317
>YIAN_HAEIN (P44993) Hypothetical protein HI1029
Length = 425
Score = 28.9 bits (63), Expect = 9.9
Identities = 14/47 (29%), Positives = 25/47 (52%), Gaps = 2/47 (4%)
Query: 110 FVVANGAAAGFLIL--SLPFSIVCIVRPLAAGPRFLLVIVDLVLMAL 154
F+VA+ G+LI LP + ++ PL P LL+++ L + +
Sbjct: 280 FLVASANVTGYLITVAELPTMLTILLEPLIENPTILLLVIMLAVFVI 326
>UPPP_STRA5 (Q8E260) Undecaprenyl-diphosphatase (EC 3.6.1.27)
(Undecaprenyl pyrophosphate phosphatase) (Bacitracin
resistance protein)
Length = 279
Score = 28.9 bits (63), Expect = 9.9
Identities = 24/88 (27%), Positives = 38/88 (42%), Gaps = 9/88 (10%)
Query: 61 ILDFILRLGAIGAALGAAVIMGTNEQILPFFTQFLQFHAQ--WDDFPMFKFFVVANGAAA 118
+L + GA + A+I+GT+ + FT FL + K+F+ N
Sbjct: 163 VLSIVPGTSRSGATILGAIIIGTSRSVAADFTFFLAIPTMFGYSGLKAVKYFLDGN---- 218
Query: 119 GFLILSLPFSIVCIVRPLAAGPRFLLVI 146
+LSL S++ +V L A L VI
Sbjct: 219 ---VLSLDQSLILLVASLTAFVVSLYVI 243
>UPPP_STRA3 (Q8E7M0) Undecaprenyl-diphosphatase (EC 3.6.1.27)
(Undecaprenyl pyrophosphate phosphatase) (Bacitracin
resistance protein)
Length = 279
Score = 28.9 bits (63), Expect = 9.9
Identities = 24/88 (27%), Positives = 38/88 (42%), Gaps = 9/88 (10%)
Query: 61 ILDFILRLGAIGAALGAAVIMGTNEQILPFFTQFLQFHAQ--WDDFPMFKFFVVANGAAA 118
+L + GA + A+I+GT+ + FT FL + K+F+ N
Sbjct: 163 VLSIVPGTSRSGATILGAIIIGTSRSVAADFTFFLAIPTMFGYSGLKAVKYFLDGN---- 218
Query: 119 GFLILSLPFSIVCIVRPLAAGPRFLLVI 146
+LSL S++ +V L A L VI
Sbjct: 219 ---VLSLDQSLILLVASLTAFVVSLYVI 243
>ATA1_MAKNI (P70083) Sarcoplasmic/endoplasmic reticulum calcium
ATPase 1 (EC 3.6.3.8) (Calcium pump 1) (SERCA1) (SR
Ca(2+)-ATPase 1) (Calcium-transporting ATPase
sarcoplasmic reticulum type, fast twitch skeletal muscle
isoform) (Endoplasmic reticulum clas
Length = 996
Score = 28.9 bits (63), Expect = 9.9
Identities = 17/49 (34%), Positives = 25/49 (50%), Gaps = 3/49 (6%)
Query: 28 KSIDGDHSPPHAATVVTTKATP---LQKGGMKKGIAILDFILRLGAIGA 73
KS+DGDH +A + +K TP + GG K + D ++ L I A
Sbjct: 370 KSVDGDHVDLNAFDISGSKYTPEGEVSHGGSKTNCSAYDGLVELATICA 418
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.325 0.136 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,223,183
Number of Sequences: 164201
Number of extensions: 878229
Number of successful extensions: 2792
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2792
Number of HSP's gapped (non-prelim): 10
length of query: 220
length of database: 59,974,054
effective HSP length: 106
effective length of query: 114
effective length of database: 42,568,748
effective search space: 4852837272
effective search space used: 4852837272
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)
Medicago: description of AC146332.5