BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146332.3 - phase: 0
(281 letters)
Database: sprot
164,201 sequences; 59,974,054 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CNT8_MOUSE (Q9D8X5) CCR4-NOT transcription complex subunit 8 (CC... 207 3e-53
CNT8_HUMAN (Q9UFF9) CCR4-NOT transcription complex subunit 8 (CC... 207 3e-53
CNO7_MOUSE (Q60809) CCR4-NOT transcription complex subunit 7 (CC... 197 2e-50
CNO7_HUMAN (Q9UIV1) CCR4-NOT transcription complex subunit 7 (CC... 197 2e-50
CNO7_CAEEL (Q17345) CCR4-NOT transcription complex subunit 7 (CC... 152 1e-36
POP2_YEAST (P39008) POP2 protein (CCR4-associated factor 1) 141 2e-33
ALP4_SCHPO (Q9Y705) Spindle pole body component alp4 (Altered po... 33 0.78
YJY5_YEAST (P47090) Hypothetical 58.1 kDa protein in SPC1-ILV3 i... 31 3.0
YBK1_YEAST (P38167) Hypothetical 119.3 kDa protein in SFT2-ATP1 ... 31 3.0
VL1_HPV12 (P36733) Major capsid protein L1 30 5.0
SYK_STRMU (Q8DUW8) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--t... 30 6.6
HLYB_ECO57 (Q46717) Alpha-hemolysin translocation ATP-binding pr... 30 6.6
CATA_ASCSU (P90682) Catalase (EC 1.11.1.6) 30 6.6
>CNT8_MOUSE (Q9D8X5) CCR4-NOT transcription complex subunit 8
(CCR4-associated factor 8)
Length = 292
Score = 207 bits (526), Expect = 3e-53
Identities = 117/266 (43%), Positives = 165/266 (61%), Gaps = 19/266 (7%)
Query: 16 IRQVWAENLEREFDLIRDFVHMFPYVSMDTEFPGVVVAP--NFDPNIPYHLRHMDPSEQY 73
I +VWA NLE E IR+ V + Y++MDTEFPGVVV P F +I Y QY
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY---------QY 62
Query: 74 SFLKANVDNLNLIQLGLTLTDANGNLPGDVAYSYIWEFNFKDFDVDRDLQNPDSIELLRR 133
L+ NVD L +IQLGLT T+ G P + W+FNFK F++ D+ + DSI+LL
Sbjct: 63 QLLRCNVDLLKIIQLGLTFTNEKGEYPSGIN---TWQFNFK-FNLTEDMYSQDSIDLLAN 118
Query: 134 QGIDFKRNLIYGVDSLEFAKLFRLKSGLVNSGVSWVTFHSSYDFGYLVKILTQNYLPSRL 193
G+ F+++ G+D+L FA+L ++ V W++FHS YDFGY+VK+LT + LP
Sbjct: 119 SGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEE 178
Query: 194 EEFLSILTQIFGQNVYDMKYMIKFC-NLYGGLERVATKLKVSRAVGNSHQAASDSLLTWQ 252
EF IL +F ++YD+KY++K C NL GGL+ VA +L + R +G HQA SDSLLT
Sbjct: 179 HEFFHIL-NLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQR-IGRQHQAGSDSLLTGM 236
Query: 253 AFKKMKDIYFVNN-GITMHAGVLFGL 277
AF +MK+++F ++ + G L+GL
Sbjct: 237 AFFRMKELFFEDSIDDAKYCGRLYGL 262
>CNT8_HUMAN (Q9UFF9) CCR4-NOT transcription complex subunit 8
(CCR4-associated factor 8) (CAF1-like protein) (CALIFp)
(CAF2)
Length = 292
Score = 207 bits (526), Expect = 3e-53
Identities = 117/266 (43%), Positives = 165/266 (61%), Gaps = 19/266 (7%)
Query: 16 IRQVWAENLEREFDLIRDFVHMFPYVSMDTEFPGVVVAP--NFDPNIPYHLRHMDPSEQY 73
I +VWA NLE E IR+ V + Y++MDTEFPGVVV P F +I Y QY
Sbjct: 12 ICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDY---------QY 62
Query: 74 SFLKANVDNLNLIQLGLTLTDANGNLPGDVAYSYIWEFNFKDFDVDRDLQNPDSIELLRR 133
L+ NVD L +IQLGLT T+ G P + W+FNFK F++ D+ + DSI+LL
Sbjct: 63 QLLRCNVDLLKIIQLGLTFTNEKGEYPSGIN---TWQFNFK-FNLTEDMYSQDSIDLLAN 118
Query: 134 QGIDFKRNLIYGVDSLEFAKLFRLKSGLVNSGVSWVTFHSSYDFGYLVKILTQNYLPSRL 193
G+ F+++ G+D+L FA+L ++ V W++FHS YDFGY+VK+LT + LP
Sbjct: 119 SGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEE 178
Query: 194 EEFLSILTQIFGQNVYDMKYMIKFC-NLYGGLERVATKLKVSRAVGNSHQAASDSLLTWQ 252
EF IL +F ++YD+KY++K C NL GGL+ VA +L + R +G HQA SDSLLT
Sbjct: 179 HEFFHIL-NLFFPSIYDVKYLMKSCKNLKGGLQEVADQLDLQR-IGRQHQAGSDSLLTGM 236
Query: 253 AFKKMKDIYFVNN-GITMHAGVLFGL 277
AF +MK+++F ++ + G L+GL
Sbjct: 237 AFFRMKELFFEDSIDDAKYCGRLYGL 262
>CNO7_MOUSE (Q60809) CCR4-NOT transcription complex subunit 7
(CCR4-associated factor 1) (CAF1)
Length = 285
Score = 197 bits (502), Expect = 2e-50
Identities = 116/267 (43%), Positives = 162/267 (60%), Gaps = 19/267 (7%)
Query: 15 KIRQVWAENLEREFDLIRDFVHMFPYVSMDTEFPGVVVAP--NFDPNIPYHLRHMDPSEQ 72
+I +VWA NL+ E IR + + YV+MDTEFPGVV P F N Y Q
Sbjct: 11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADY---------Q 61
Query: 73 YSFLKANVDNLNLIQLGLTLTDANGNLPGDVAYSYIWEFNFKDFDVDRDLQNPDSIELLR 132
Y L+ NVD L +IQLGLT + G P + W+FNFK F++ D+ DSIELL
Sbjct: 62 YQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS---TWQFNFK-FNLTEDMYAQDSIELLT 117
Query: 133 RQGIDFKRNLIYGVDSLEFAKLFRLKSGLVNSGVSWVTFHSSYDFGYLVKILTQNYLPSR 192
GI FK++ G+++ FA+L ++ GV W++FHS YDFGYL+KILT + LP
Sbjct: 118 TSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEE 177
Query: 193 LEEFLSILTQIFGQNVYDMKYMIKFC-NLYGGLERVATKLKVSRAVGNSHQAASDSLLTW 251
+F IL ++F +YD+KY++K C NL GGL+ VA +L++ R +G HQA SDSLLT
Sbjct: 178 ELDFFEIL-RLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTG 235
Query: 252 QAFKKMKDIYFVNN-GITMHAGVLFGL 277
AF KM++++F ++ + G L+GL
Sbjct: 236 MAFFKMREMFFEDHIDDAKYCGHLYGL 262
>CNO7_HUMAN (Q9UIV1) CCR4-NOT transcription complex subunit 7
(CCR4-associated factor 1) (CAF1) (BTG1 binding factor
1)
Length = 285
Score = 197 bits (502), Expect = 2e-50
Identities = 116/267 (43%), Positives = 162/267 (60%), Gaps = 19/267 (7%)
Query: 15 KIRQVWAENLEREFDLIRDFVHMFPYVSMDTEFPGVVVAP--NFDPNIPYHLRHMDPSEQ 72
+I +VWA NL+ E IR + + YV+MDTEFPGVV P F N Y Q
Sbjct: 11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADY---------Q 61
Query: 73 YSFLKANVDNLNLIQLGLTLTDANGNLPGDVAYSYIWEFNFKDFDVDRDLQNPDSIELLR 132
Y L+ NVD L +IQLGLT + G P + W+FNFK F++ D+ DSIELL
Sbjct: 62 YQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS---TWQFNFK-FNLTEDMYAQDSIELLT 117
Query: 133 RQGIDFKRNLIYGVDSLEFAKLFRLKSGLVNSGVSWVTFHSSYDFGYLVKILTQNYLPSR 192
GI FK++ G+++ FA+L ++ GV W++FHS YDFGYL+KILT + LP
Sbjct: 118 TSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEE 177
Query: 193 LEEFLSILTQIFGQNVYDMKYMIKFC-NLYGGLERVATKLKVSRAVGNSHQAASDSLLTW 251
+F IL ++F +YD+KY++K C NL GGL+ VA +L++ R +G HQA SDSLLT
Sbjct: 178 ELDFFEIL-RLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTG 235
Query: 252 QAFKKMKDIYFVNN-GITMHAGVLFGL 277
AF KM++++F ++ + G L+GL
Sbjct: 236 MAFFKMREMFFEDHIDDAKYCGHLYGL 262
>CNO7_CAEEL (Q17345) CCR4-NOT transcription complex subunit 7
(CCR4-associated factor 1) (CAF1)
Length = 310
Score = 152 bits (383), Expect = 1e-36
Identities = 105/282 (37%), Positives = 151/282 (53%), Gaps = 30/282 (10%)
Query: 9 ASNKP-IKIRQVWAENLEREFDLIRDFVHMFPYVSMDTEFPGVVVAPNFDPNIPYHLRHM 67
AS P +KI V+ N+E EF IR FV +PYV+MDTEFPGVV P L
Sbjct: 15 ASGAPEVKIHNVYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVVATP---------LGTF 65
Query: 68 DPSEQYSFLKA--NVDNLNLIQLGLTLTDANGNLP--GDVAYSYIWEFNFKDFDVDRDLQ 123
E +++ + NV+ L LIQ+G + + G LP GDV W+FNF +F D+
Sbjct: 66 RSKEDFNYQQVFCNVNMLKLIQVGFAMVNDKGELPPTGDV-----WQFNF-NFSFAEDMF 119
Query: 124 NPDSIELLRRQGIDFKRNLIYGVDSLEFAKLFRLKSGLVNSGVSWVTFHSSYDFGYLVKI 183
+ +S+E+LR+ GIDF G+ + F +L + + ++W+TF S YDFGYL+K
Sbjct: 120 SHESVEMLRQAGIDFTLLQNNGIPTAVFGELLTTSGLITDPRITWLTFSSGYDFGYLLKS 179
Query: 184 LTQNYLPSRLEEFLSILTQIFGQNVYDMKYMIKFCN-----LYGGLERVATKLKVSRAVG 238
+T LP F +F + +D+K +++ N L GGL+ VA +L V R G
Sbjct: 180 ITLGDLPKEESTFFMCHKTLFPTS-FDIKILLRTPNCASAKLKGGLQEVADQLDVKRQ-G 237
Query: 239 NSHQAASDSLLTWQAFKKMKDIYFVNNG---ITMHAGVLFGL 277
HQA SD+LLT F K+K +F +N + G +FGL
Sbjct: 238 VRHQAGSDALLTAATFFKIKKQFFGDNWNQIAPLICGHMFGL 279
>POP2_YEAST (P39008) POP2 protein (CCR4-associated factor 1)
Length = 433
Score = 141 bits (356), Expect = 2e-33
Identities = 76/203 (37%), Positives = 123/203 (60%), Gaps = 15/203 (7%)
Query: 16 IRQVWAENLEREFDLIRDFVHMFPYVSMDTEFPGVVVAP--NFDPNIPYHLRHMDPSEQY 73
+R VW NL EF +IR V + +VS+ TEF G + P F + YH Y
Sbjct: 160 VRDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGTFRSKVDYH---------Y 210
Query: 74 SFLKANVDNLNLIQLGLTLTDANGNLPGDVAYSYIWEFNFKDFDVDRDLQNPDSIELLRR 133
++ANVD LN IQLGL+L+DANGN P + + W+FNF +FD +++ + +S+ELLR+
Sbjct: 211 QTMRANVDFLNPIQLGLSLSDANGNKPDNGPST--WQFNF-EFDPKKEIMSTESLELLRK 267
Query: 134 QGIDFKRNLIYGVDSLEFAKLFRLKSGLVNSGVSWVTFHSSYDFGYLVKILTQNYLPSRL 193
GI+F+++ G+D EF++L +++ V+W+T+H++YD G+L+ IL + +P+
Sbjct: 268 SGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNK 327
Query: 194 EEFLSILTQIFGQNVYDMKYMIK 216
E+F + Q + N YD+ + K
Sbjct: 328 EDFEWWVHQ-YMPNFYDLNLVYK 349
>ALP4_SCHPO (Q9Y705) Spindle pole body component alp4 (Altered
polarity protein 4)
Length = 784
Score = 33.1 bits (74), Expect = 0.78
Identities = 24/119 (20%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Query: 121 DLQNPDSIELLRRQGIDFKRNLIYGVDSLEFAKLFRLKSGLVNSGVSWVTFHSSYDFG-Y 179
+L+N +++ L ++ IDF + L ++L +++S L+N+ + ++ S++ Y
Sbjct: 667 ELENARTVDNLMQEHIDFLDTCLKEC-MLTNSRLLKVQSKLLNTCAMFASYTSTFTRSLY 725
Query: 180 LVKILTQNYLPSRLEEFLSILTQIFGQNVYDMKYMIKFCNLYGGLERVATKLKVSRAVG 238
L++ +++ R+++ IL + +K ++ CN + E A V + G
Sbjct: 726 LLENSEESFDEGRMDKMEEILRRYEDSFSRHLKSLVNACNYFASTETAALLSLVMKLTG 784
>YJY5_YEAST (P47090) Hypothetical 58.1 kDa protein in SPC1-ILV3
intergenic region
Length = 510
Score = 31.2 bits (69), Expect = 3.0
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 110 EFNFKDFD----VDRDLQNPDSIELLRRQGIDFKRNLIYGVDSLEFAKLFRLKSGLV-NS 164
++N++ +D DR L P I ++ + F + L+YG +E AK+ R +GL+
Sbjct: 291 KYNYEYYDHRPFTDRILLAPTQIGVVYCLLLTFFQFLLYGPLHVEMAKVLRPANGLIYRI 350
Query: 165 GVSWVTF 171
+SW TF
Sbjct: 351 AMSWFTF 357
>YBK1_YEAST (P38167) Hypothetical 119.3 kDa protein in SFT2-ATP1
intergenic region
Length = 1077
Score = 31.2 bits (69), Expect = 3.0
Identities = 18/67 (26%), Positives = 33/67 (48%), Gaps = 6/67 (8%)
Query: 10 SNKPIKIRQVWAENLEREFDLIRDFVHMFPYVSMDTEFPGVVVAPNFDPNIPYHLRHMDP 69
+NKPI I +VW ++L E + YVS+++E P + N+ H+
Sbjct: 535 ANKPIYINRVWTDSLSYEISFAQ------KYVSLNSEVPIKIKLAPICKNVCVKRIHVSI 588
Query: 70 SEQYSFL 76
+E+ +F+
Sbjct: 589 TERVTFV 595
>VL1_HPV12 (P36733) Major capsid protein L1
Length = 517
Score = 30.4 bits (67), Expect = 5.0
Identities = 36/152 (23%), Positives = 59/152 (38%), Gaps = 20/152 (13%)
Query: 41 VSMDTEFPGVVVAPNFDPN-IPYHLRHMD-------------PSEQYSFLKANVDNLNLI 86
+S+ ++ V PN+D +LRH++ P + + N N +L+
Sbjct: 356 ISIYSDNQNVHDIPNYDSQKFREYLRHVEEYEISLILQLCKVPLKAEVLAQINAMNSSLL 415
Query: 87 ---QLGLTLTDANGNLPGDVAYSYIWEFNFKDFDVDRDLQNPDSIELLRRQGIDFKRNLI 143
QLG T N P Y YI + D + + PD + L +D L
Sbjct: 416 EDWQLGFVPTPDN---PIHDTYRYIESLATRCPDKNPPKEKPDPYDGLSFWTVDMTERLS 472
Query: 144 YGVDSLEFAKLFRLKSGLVNSGVSWVTFHSSY 175
+D + F ++GL + V+ T SSY
Sbjct: 473 LDLDQYSLGRKFLFQAGLQQTTVNGTTKSSSY 504
>SYK_STRMU (Q8DUW8) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA
ligase) (LysRS)
Length = 496
Score = 30.0 bits (66), Expect = 6.6
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 207 NVYDMKYMIKFCN-------LYGGLERVATKLKVSRAVGN--SHQAASDSLLTWQAFKKM 257
N DM +++ + GG+ERV ++ R G +H S+ +QA+
Sbjct: 222 NAQDMDMVLRIATELHLKRLIVGGMERVYEMGRIFRNEGMDATHNPEFTSIEVYQAYADF 281
Query: 258 KDIYFVNNGITMHA 271
+DI + GI HA
Sbjct: 282 EDIMDLTEGIVQHA 295
>HLYB_ECO57 (Q46717) Alpha-hemolysin translocation ATP-binding
protein hlyB (EHEC-hlyB protein)
Length = 706
Score = 30.0 bits (66), Expect = 6.6
Identities = 21/68 (30%), Positives = 35/68 (50%), Gaps = 7/68 (10%)
Query: 150 EFAKLFRLKSGLVNSGVSWVTFHSSYDFGYLV-------KILTQNYLPSRLEEFLSILTQ 202
EF KL++ K LV S + V + +DF + + +IL + S +FL+++T
Sbjct: 113 EFEKLYQGKVILVTSRATVVGELAKFDFSWFIPSVVKYRRILLEVLTVSAFIQFLALITP 172
Query: 203 IFGQNVYD 210
+F Q V D
Sbjct: 173 LFFQVVMD 180
>CATA_ASCSU (P90682) Catalase (EC 1.11.1.6)
Length = 541
Score = 30.0 bits (66), Expect = 6.6
Identities = 33/101 (32%), Positives = 45/101 (43%), Gaps = 8/101 (7%)
Query: 31 IRDFVHMFPYVSMDTEFPGVVVAPNFDPNIPYHLRHMDPSEQYSFLKANVDNLNLIQLGL 90
++D M+ + S+ E V+ D IP RHMD ++F N D N +
Sbjct: 175 LKDPNMMWDFFSLRPETTHQVMILFGDRGIPDGFRHMDGFGSHTFKLVNKDG-NAVYCKF 233
Query: 91 TLTDANG--NLPGDVAYSYIWEFNFKDFDVDRDLQNPDSIE 129
+ A G NLP DVA E D+ + RDL DSIE
Sbjct: 234 HIKTAQGIRNLPPDVAIKLAGE--DPDYSI-RDLY--DSIE 269
Database: sprot
Posted date: Nov 25, 2004 10:54 AM
Number of letters in database: 59,974,054
Number of sequences in database: 164,201
Lambda K H
0.322 0.140 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,625,424
Number of Sequences: 164201
Number of extensions: 1437423
Number of successful extensions: 3079
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3052
Number of HSP's gapped (non-prelim): 13
length of query: 281
length of database: 59,974,054
effective HSP length: 109
effective length of query: 172
effective length of database: 42,076,145
effective search space: 7237096940
effective search space used: 7237096940
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)
Medicago: description of AC146332.3